mRNA_S-dermatodea_contig9046.17127.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9046.17127.1
Unique NamemRNA_S-dermatodea_contig9046.17127.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9046.17127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9046contigS-dermatodea_contig9046:556..1530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size975
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9046.17127.1prot_S-dermatodea_contig9046.17127.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9046 634..1239 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925381.9238417-UTR-S-dermatodea_contig9046:555..6331622925381.9238417-UTR-S-dermatodea_contig9046:555..633Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9046 556..633 +
1694079895.4664934-UTR-S-dermatodea_contig9046:555..6331694079895.4664934-UTR-S-dermatodea_contig9046:555..633Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9046 556..633 +
1622925381.9527307-UTR-S-dermatodea_contig9046:1239..15301622925381.9527307-UTR-S-dermatodea_contig9046:1239..1530Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9046 1240..1530 +
1694079895.4874704-UTR-S-dermatodea_contig9046:1239..15301694079895.4874704-UTR-S-dermatodea_contig9046:1239..1530Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9046 1240..1530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925381.9379985-CDS-S-dermatodea_contig9046:633..12391622925381.9379985-CDS-S-dermatodea_contig9046:633..1239Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9046 634..1239 +
1694079895.477793-CDS-S-dermatodea_contig9046:633..12391694079895.477793-CDS-S-dermatodea_contig9046:633..1239Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9046 634..1239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9046.17127.1

>prot_S-dermatodea_contig9046.17127.1 ID=prot_S-dermatodea_contig9046.17127.1|Name=mRNA_S-dermatodea_contig9046.17127.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=202bp
MHSLWVVLAIGIRILLPEHLFEMAVGSSVILRVAYAEQYAHVVYMGFQLW
RSPIGKILTYFPLMSDADMDSIAWYCFGLAVLVVNWGSTFLGMSYNHQWE
KVAYWFILLGSIAPGLWYFLWIECGNTKAGPAVVKYVGRKRGAGYEHRDP
KNPGCFRPLGRDILKDDEMSVTKGNALSVPNSDGVKTAPTSGTSNYEPCE
E*
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mRNA from alignment at S-dermatodea_contig9046:556..1530+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9046.17127.1 ID=mRNA_S-dermatodea_contig9046.17127.1|Name=mRNA_S-dermatodea_contig9046.17127.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=975bp|location=Sequence derived from alignment at S-dermatodea_contig9046:556..1530+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGCGCATTCTTCGTTTCCTTTGGCTGGAAGGCAGCGCCTTACTGCGGGT
CCAAGCGACGGCTCGGCAAGGGTGGTTCATGCACTCTCTCTGGGTCGTGC
TCGCGATCGGGATTCGGATACTCTTGCCGGAACACCTGTTTGAAATGGCG
GTGGGGTCATCTGTCATCTTGCGAGTGGCCTATGCTGAACAGTATGCCCA
CGTTGTTTACATGGGTTTCCAGCTGTGGCGCTCCCCCATCGGAAAAATAT
TAACCTACTTCCCGCTCATGAGTGACGCAGACATGGACAGCATAGCGTGG
TACTGCTTTGGGCTCGCGGTTCTCGTCGTAAACTGGGGGTCAACTTTCCT
GGGCATGTCGTATAACCACCAATGGGAAAAGGTGGCATACTGGTTCATCC
TGCTCGGTTCGATAGCGCCCGGTCTGTGGTACTTTCTTTGGATTGAATGC
GGAAACACCAAGGCGGGCCCTGCCGTCGTGAAGTACGTGGGCAGGAAGAG
GGGGGCGGGCTACGAACACCGAGACCCGAAAAATCCGGGATGTTTTAGAC
CACTTGGCAGGGATATACTGAAAGATGACGAAATGTCTGTGACGAAAGGG
AATGCCCTTTCCGTGCCAAATAGTGACGGAGTTAAAACTGCGCCCACGTC
GGGAACTTCCAACTATGAACCTTGTGAAGAGTGATCGCGTCGAGTGGCGT
ATGCATCTGTAACCAGGCAGGGGACCCATGCATCGGCCGGCCTTAGTTTT
CGGGCAACTTTTTTTCGGGGCCGTAAACGACGGGCCGCTGTTCATTTCCT
TGACATGGAGACAAACAAGTGGACCACGCACGTCAAAACGTCCGGGGTGA
TGCTACACTTTAGGCGGATCGTACGGCACGCGTTGTGCCCACCACGAACC
TGGAAGTTCCCGTGATAGACAGCCTCCTCCCTCAGCTTTTGAGGGAAAAG
GTGAGGGCGTAGGGGGCGGTGGAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9046:556..1530+

>mRNA_S-dermatodea_contig9046.17127.1 ID=mRNA_S-dermatodea_contig9046.17127.1|Name=mRNA_S-dermatodea_contig9046.17127.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at S-dermatodea_contig9046:556..1530+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCACTCTCTCTGGGTCGTGCTCGCGATCGGGATTCGGATACTCTTGCC
GGAACACCTGTTTGAAATGGCGGTGGGGTCATCTGTCATCTTGCGAGTGG
CCTATGCTGAACAGTATGCCCACGTTGTTTACATGGGTTTCCAGCTGTGG
CGCTCCCCCATCGGAAAAATATTAACCTACTTCCCGCTCATGAGTGACGC
AGACATGGACAGCATAGCGTGGTACTGCTTTGGGCTCGCGGTTCTCGTCG
TAAACTGGGGGTCAACTTTCCTGGGCATGTCGTATAACCACCAATGGGAA
AAGGTGGCATACTGGTTCATCCTGCTCGGTTCGATAGCGCCCGGTCTGTG
GTACTTTCTTTGGATTGAATGCGGAAACACCAAGGCGGGCCCTGCCGTCG
TGAAGTACGTGGGCAGGAAGAGGGGGGCGGGCTACGAACACCGAGACCCG
AAAAATCCGGGATGTTTTAGACCACTTGGCAGGGATATACTGAAAGATGA
CGAAATGTCTGTGACGAAAGGGAATGCCCTTTCCGTGCCAAATAGTGACG
GAGTTAAAACTGCGCCCACGTCGGGAACTTCCAACTATGAACCTTGTGAA
GAGTGAATGCACTCTCTCTGGGTCGTGCTCGCGATCGGGATTCGGATACT
CTTGCCGGAACACCTGTTTGAAATGGCGGTGGGGTCATCTGTCATCTTGC
GAGTGGCCTATGCTGAACAGTATGCCCACGTTGTTTACATGGGTTTCCAG
CTGTGGCGCTCCCCCATCGGAAAAATATTAACCTACTTCCCGCTCATGAG
TGACGCAGACATGGACAGCATAGCGTGGTACTGCTTTGGGCTCGCGGTTC
TCGTCGTAAACTGGGGGTCAACTTTCCTGGGCATGTCGTATAACCACCAA
TGGGAAAAGGTGGCATACTGGTTCATCCTGCTCGGTTCGATAGCGCCCGG
TCTGTGGTACTTTCTTTGGATTGAATGCGGAAACACCAAGGCGGGCCCTG
CCGTCGTGAAGTACGTGGGCAGGAAGAGGGGGGCGGGCTACGAACACCGA
GACCCGAAAAATCCGGGATGTTTTAGACCACTTGGCAGGGATATACTGAA
AGATGACGAAATGTCTGTGACGAAAGGGAATGCCCTTTCCGTGCCAAATA
GTGACGGAGTTAAAACTGCGCCCACGTCGGGAACTTCCAACTATGAACCT
TGTGAAGAGTGA
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