mRNA_S-dermatodea_contig9040.17120.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9040.17120.1
Unique NamemRNA_S-dermatodea_contig9040.17120.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9040.17120.1 vs. uniprot
Match: D8LAX2_ECTSI (Peptide-methionine (R)-S-oxide reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAX2_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.430e-21
Identity = 44/63 (69.84%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  331 KLSSGCGWPAFDKCFKGSVVTHEDNAYGMKRVEIMCASCGGHLGHVVSFFFFRPMSRGKRLCV 519
            K  SGCGWPAFDKCFKG+VVT+ DNAYGM+RVEI+CA CGGHLGHV  F   R  S  +R CV
Sbjct:   72 KFKSGCGWPAFDKCFKGAVVTNTDNAYGMQRVEIVCAKCGGHLGHV--FEGERMTSTNERHCV 132
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BLAST of mRNA_S-dermatodea_contig9040.17120.1 vs. uniprot
Match: F2URT4_SALR5 (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2URT4_SALR5)

HSP 1 Score: 89.7 bits (221), Expect = 1.250e-19
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:  331 KLSSGCGWPAFDKCFKGSVVTHEDNAYGMKRVEIMCASCGGHLGHVVSFFFFRPMSRGKRLCV 519
            K +SGCGWPAFDKC+KG+V TH DN++GM+RVEI+C +CGGHLGHV  F   R     +R CV
Sbjct:   70 KFNSGCGWPAFDKCYKGAVTTHVDNSFGMRRVEIVCGACGGHLGHV--FEGERMTDTNERHCV 130
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BLAST of mRNA_S-dermatodea_contig9040.17120.1 vs. uniprot
Match: A9V0Z0_MONBE (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V0Z0_MONBE)

HSP 1 Score: 87.4 bits (215), Expect = 8.000e-19
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 1 
Query:  148 GVTRPEPSPSEPELRGNSGGHPDKILQSKTNQLINLTDAEFFLFXXXXXXXXCSAPTLRNF-KLSSGCGWPAFDKCFKGSVVTHEDNAYGMKRVEIMCASCGGHLGHVVSFFFFRPMSRGKRLCV 519
            GV R E S  + E R        ++L++K  +  N    +F+          C  P      K +SGCGWPAFDKC+ G+V TH DN++GM+RVEI+CA+C GHLGHV  F   R     +R CV
Sbjct:    4 GVPRVEKS--DQEWRSQLSKEEYRVLRNKGTEPTNGEYDKFYPKKGYFVCRGCQTPLYSAAAKFASGCGWPAFDKCYAGAVKTHVDNSFGMRRVEIVCAACDGHLGHV--FEGERFTETNERHCV 124
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BLAST of mRNA_S-dermatodea_contig9040.17120.1 vs. uniprot
Match: A0A0G4FGB5_9ALVE (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FGB5_9ALVE)

HSP 1 Score: 87.0 bits (214), Expect = 1.070e-18
Identity = 41/63 (65.08%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:  331 KLSSGCGWPAFDKCFKGSVVTHEDNAYGMKRVEIMCASCGGHLGHVVSFFFFRPMSRGKRLCV 519
            K  SGCGWPAFDKCFKGSVVT  D + GM R+EIMC  CGGHLGHV  F   R  S  +R CV
Sbjct:   62 KFDSGCGWPAFDKCFKGSVVTERDASMGMVRIEIMCGKCGGHLGHV--FEGERMTSTNERHCV 122
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BLAST of mRNA_S-dermatodea_contig9040.17120.1 vs. uniprot
Match: C1EJ82_MICCC (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EJ82_MICCC)

HSP 1 Score: 84.3 bits (207), Expect = 1.190e-17
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:  331 KLSSGCGWPAFDKCFKGSVVTHEDNAYGMKRVEIMCASCGGHLGHVVSFFFFRPMSRGKRLCV 519
            K +SGCGWPAFDKC+KG+++T  D  +GMKRVEIMC +C GHLGHV     F P    +R CV
Sbjct:   62 KFNSGCGWPAFDKCYKGALITETDMTFGMKRVEIMCGACDGHLGHVFENEGFTPTM--ERHCV 122
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BLAST of mRNA_S-dermatodea_contig9040.17120.1 vs. uniprot
Match: A0A6B2LP73_9EUKA (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LP73_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 1.610e-17
Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:  331 KLSSGCGWPAFDKCFKGSVVTHEDNAYGMKRVEIMCASCGGHLGHVVSFFFFRPMSRGKRLCV 519
            K +SGCGWPAFD+CF GSV    D+++GMKRVEIMC +CGGHLGHV     F P    +R CV
Sbjct:   47 KFNSGCGWPAFDQCFSGSVKVEVDDSFGMKRVEIMCYTCGGHLGHVFHGERFTPTD--ERHCV 107
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BLAST of mRNA_S-dermatodea_contig9040.17120.1 vs. uniprot
Match: A0A830I253_9CHLO (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830I253_9CHLO)

HSP 1 Score: 85.5 bits (210), Expect = 1.770e-17
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:  331 KLSSGCGWPAFDKCFKGSVVTHEDNAYGMKRVEIMCASCGGHLGHVVSFFFFRPMSRGKRLCV 519
            K  SGCGWPAFDKC+KG V+T  D+  GM+RVEIMC +CGGHLGHV     F P    +R CV
Sbjct:  124 KFKSGCGWPAFDKCYKGGVITEVDSTMGMRRVEIMCGNCGGHLGHVFENEGFTPTM--ERHCV 184
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BLAST of mRNA_S-dermatodea_contig9040.17120.1 vs. uniprot
Match: R1FBB3_EMIHU (Peptide-methionine (R)-S-oxide reductase n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FBB3_EMIHU)

HSP 1 Score: 84.0 bits (206), Expect = 2.920e-17
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:  331 KLSSGCGWPAFDKCFKGSVVTHEDNAYGMKRVEIMCASCGGHLGHV 468
            K  SGCGWPAFD+C+KG+V T  D+++GM+RVEIMC+SCGGHLGHV
Sbjct:   58 KFKSGCGWPAFDRCYKGAVRTEVDSSFGMRRVEIMCSSCGGHLGHV 103
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BLAST of mRNA_S-dermatodea_contig9040.17120.1 vs. uniprot
Match: A0A061RLU4_9CHLO (Peptide-methionine (R)-S-oxide reductase n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RLU4_9CHLO)

HSP 1 Score: 86.7 bits (213), Expect = 3.430e-17
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:  331 KLSSGCGWPAFDKCFKGSVVTHEDNAYGMKRVEIMCASCGGHLGHVVSFFFFRPMSRGKRLCV 519
            K  SGCGWPAFD+C++GS+VT  D + GM+RVEI+CASCGGHLGHV     F P +  +R CV
Sbjct:  226 KFDSGCGWPAFDRCYEGSIVTKADTSLGMRRVEILCASCGGHLGHVFEGEGFTPTN--ERHCV 286
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BLAST of mRNA_S-dermatodea_contig9040.17120.1 vs. uniprot
Match: A4RRT7_OSTLU (Peptide-methionine (R)-S-oxide reductase (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RRT7_OSTLU)

HSP 1 Score: 82.0 bits (201), Expect = 6.190e-17
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:  331 KLSSGCGWPAFDKCFKGSVVTHEDNAYGMKRVEIMCASCGGHLGHV 468
            K  SGCGWPAFDKC+ G++ T  DNA+GM+RVEIMCA+C GHLGHV
Sbjct:   58 KFDSGCGWPAFDKCYAGALKTEIDNAFGMRRVEIMCAACDGHLGHV 103
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9040.17120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAX2_ECTSI1.430e-2169.84Peptide-methionine (R)-S-oxide reductase n=2 Tax=E... [more]
F2URT4_SALR51.250e-1961.90Peptide-methionine (R)-S-oxide reductase n=1 Tax=S... [more]
A9V0Z0_MONBE8.000e-1940.80Peptide-methionine (R)-S-oxide reductase n=1 Tax=M... [more]
A0A0G4FGB5_9ALVE1.070e-1865.08Peptide-methionine (R)-S-oxide reductase n=1 Tax=C... [more]
C1EJ82_MICCC1.190e-1758.73Peptide-methionine (R)-S-oxide reductase n=1 Tax=M... [more]
A0A6B2LP73_9EUKA1.610e-1760.32Peptide-methionine (R)-S-oxide reductase n=1 Tax=A... [more]
A0A830I253_9CHLO1.770e-1760.32Peptide-methionine (R)-S-oxide reductase n=1 Tax=P... [more]
R1FBB3_EMIHU2.920e-1771.74Peptide-methionine (R)-S-oxide reductase n=3 Tax=E... [more]
A0A061RLU4_9CHLO3.430e-1760.32Peptide-methionine (R)-S-oxide reductase n=3 Tax=T... [more]
A4RRT7_OSTLU6.190e-1771.74Peptide-methionine (R)-S-oxide reductase (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9040contigS-dermatodea_contig9040:3566..4084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue2.6e-17
Seed eggNOG ortholog2880.D8LAX2
KEGG koko:K07305
EggNOG free text desc.peptide-methionine (R)-S-oxide reductase activity
EggNOG OGsCOG0229@1,KOG0856@2759
EC1.8.4.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptide methionine sulphoxide reductase MrsB
Ec32 orthologEc-27_006120.1
Exons1
Model size519
Cds size519
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925381.593359-CDS-S-dermatodea_contig9040:3565..40841622925381.593359-CDS-S-dermatodea_contig9040:3565..4084Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9040 3566..4084 +
1694079895.27148-CDS-S-dermatodea_contig9040:3565..40841694079895.27148-CDS-S-dermatodea_contig9040:3565..4084Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9040 3566..4084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9040.17120.1prot_S-dermatodea_contig9040.17120.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9040 3566..4084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9040.17120.1

>prot_S-dermatodea_contig9040.17120.1 ID=prot_S-dermatodea_contig9040.17120.1|Name=mRNA_S-dermatodea_contig9040.17120.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=173bp
MSPDYDTSRPLEKSRPASRAEVLSQEVACLVTLNIHRPWLNLAFGPHPRG
VTRPEPSPSEPELRGNSGGHPDKILQSKTNQLINLTDAEFFLFFLSFLCF
FCSAPTLRNFKLSSGCGWPAFDKCFKGSVVTHEDNAYGMKRVEIMCASCG
GHLGHVVSFFFFRPMSRGKRLCV
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mRNA from alignment at S-dermatodea_contig9040:3566..4084+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9040.17120.1 ID=mRNA_S-dermatodea_contig9040.17120.1|Name=mRNA_S-dermatodea_contig9040.17120.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=519bp|location=Sequence derived from alignment at S-dermatodea_contig9040:3566..4084+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCTCCGGACTATGACACGTCACGACCTTTGGAGAAAAGTAGGCCTGC
GTCCAGGGCTGAGGTTCTATCACAGGAGGTCGCGTGTCTTGTCACCCTCA
ATATCCATCGGCCTTGGCTGAACCTCGCGTTCGGCCCACATCCACGAGGT
GTGACCCGTCCCGAGCCAAGCCCTAGCGAGCCCGAACTCAGGGGGAACTC
AGGGGGTCACCCCGACAAGATACTCCAATCAAAAACCAATCAATTGATCA
ACCTGACTGACGCCGAGTTTTTTCTTTTTTTTCTTTCCTTCCTGTGTTTT
TTCTGTTCTGCGCCGACGCTCCGGAACTTTAAACTTTCCAGTGGCTGCGG
CTGGCCGGCGTTCGACAAGTGCTTCAAGGGATCAGTCGTGACCCATGAGG
ACAACGCGTACGGCATGAAGAGGGTGGAGATCATGTGCGCATCATGCGGC
GGCCACCTCGGGCACGTGGTGAGTTTTTTCTTTTTTCGTCCCATGTCCCG
GGGAAAACGGCTATGTGTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9040:3566..4084+

>mRNA_S-dermatodea_contig9040.17120.1 ID=mRNA_S-dermatodea_contig9040.17120.1|Name=mRNA_S-dermatodea_contig9040.17120.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at S-dermatodea_contig9040:3566..4084+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCTCCGGACTATGACACGTCACGACCTTTGGAGAAAAGTAGGCCTGC
GTCCAGGGCTGAGGTTCTATCACAGGAGGTCGCGTGTCTTGTCACCCTCA
ATATCCATCGGCCTTGGCTGAACCTCGCGTTCGGCCCACATCCACGAGGT
GTGACCCGTCCCGAGCCAAGCCCTAGCGAGCCCGAACTCAGGGGGAACTC
AGGGGGTCACCCCGACAAGATACTCCAATCAAAAACCAATCAATTGATCA
ACCTGACTGACGCCGAGTTTTTTCTTTTTTTTCTTTCCTTCCTGTGTTTT
TTCTGTTCTGCGCCGACGCTCCGGAACTTTAAACTTTCCAGTGGCTGCGG
CTGGCCGGCGTTCGACAAGTGCTTCAAGGGATCAGTCGTGACCCATGAGG
ACAACGCGTACGGCATGAAGAGGGTGGAGATCATGTGCGCATCATGCGGC
GGCCACCTCGGGCACGTGGTGAGTTTTTTCTTTTTTCGTCCCATGTCCCG
GGGAAAACGGCTATGTGTAATGTCTCCGGACTATGACACGTCACGACCTT
TGGAGAAAAGTAGGCCTGCGTCCAGGGCTGAGGTTCTATCACAGGAGGTC
GCGTGTCTTGTCACCCTCAATATCCATCGGCCTTGGCTGAACCTCGCGTT
CGGCCCACATCCACGAGGTGTGACCCGTCCCGAGCCAAGCCCTAGCGAGC
CCGAACTCAGGGGGAACTCAGGGGGTCACCCCGACAAGATACTCCAATCA
AAAACCAATCAATTGATCAACCTGACTGACGCCGAGTTTTTTCTTTTTTT
TCTTTCCTTCCTGTGTTTTTTCTGTTCTGCGCCGACGCTCCGGAACTTTA
AACTTTCCAGTGGCTGCGGCTGGCCGGCGTTCGACAAGTGCTTCAAGGGA
TCAGTCGTGACCCATGAGGACAACGCGTACGGCATGAAGAGGGTGGAGAT
CATGTGCGCATCATGCGGCGGCCACCTCGGGCACGTGGTGAGTTTTTTCT
TTTTTCGTCCCATGTCCCGGGGAAAACGGCTATGTGTA
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