mRNA_S-dermatodea_contig9036.17117.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9036.17117.1
Unique NamemRNA_S-dermatodea_contig9036.17117.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9036.17117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9036contigS-dermatodea_contig9036:3621..4594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size350
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925381.4148142-CDS-S-dermatodea_contig9036:3622..38381622925381.4148142-CDS-S-dermatodea_contig9036:3622..3838Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9036 3623..3838 -
1694079895.161124-CDS-S-dermatodea_contig9036:3622..38381694079895.161124-CDS-S-dermatodea_contig9036:3622..3838Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9036 3623..3838 -
1622925381.4251668-CDS-S-dermatodea_contig9036:4462..45941622925381.4251668-CDS-S-dermatodea_contig9036:4462..4594Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9036 4463..4594 -
1694079895.172564-CDS-S-dermatodea_contig9036:4462..45941694079895.172564-CDS-S-dermatodea_contig9036:4462..4594Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9036 4463..4594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9036.17117.1prot_S-dermatodea_contig9036.17117.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9036 3623..4594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9036.17117.1

>prot_S-dermatodea_contig9036.17117.1 ID=prot_S-dermatodea_contig9036.17117.1|Name=mRNA_S-dermatodea_contig9036.17117.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=116bp
GSQLVQHQNQQEEQGWGDGGWGKDGGGRHYHYRALESPTTIRPEESGSTD
GWTQLTGGGEDRFPMFDHDHRVERHNSHPSSLSRQPDCHSQGIAMSFPPP
QQYSLAGRHPAAAGLA
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mRNA from alignment at S-dermatodea_contig9036:3621..4594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9036.17117.1 ID=mRNA_S-dermatodea_contig9036.17117.1|Name=mRNA_S-dermatodea_contig9036.17117.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=974bp|location=Sequence derived from alignment at S-dermatodea_contig9036:3621..4594- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCTCGCAGCTGGTGCAGCACCAGAACCAGCAGGAGGAGCAGGGCTGGGG
GGACGGCGGCTGGGGTAAGGACGGCGGCGGCAGGCACTACCACTACCGAG
CACTCGAGTCTCCTACCACGATACGCCCTGAGGTATTGACGATATAGACA
TGATATGATAGTATGCAGTATACATATATATACGAAATGGTGCTGTAGAG
AGCTTTATAAGCTGGCCGTCTGTCGTGTGTGGATGGAGCTGGGACCCTTT
TTTCCCCCTTCTTGTCATGTTTGCTTTGTTTTGTTTTTGTTTTTGTTTTG
GGAGCTACTGCATCGTGCTGCTGCGTTCGAATGAAACGGACGACGCTCAA
GTTCTGCCGATAGGTTGGTGAGTGAAGCGCGTCCTTTTGCTGCACTTCGT
TGCTGGTGGTGTGCGAATAGGTCGTTTTCATCTCAAGCCCTCGTGTCCTG
GCAGGGGCTCGAACGCCGCGTGGTAATACAGAGCATGTAGGACGGCGCAT
TTTGTTGTGTTTCCTCCTCCCTCCCATTGTGTCTCTTTAACCTCCAACAT
TGCTGCCTTCGGGTGGTTGGTCACACCCGCTGACGCTGTTCCGCGTCGAT
TTTTGTCTGAGTTTCGTGGTATGCGCGTCCCCCTTCCTGCCTGCTTTGGC
GGTTCTTCCTTCGTAGTCCAGCGGGCATTGGGCGTGTTGCATCTCTCAAC
TTATCCGACCCTTTCTTCCCCTCCCCCCCCTCCGTCCGCGCGGTTCCCTC
CGGCAGGAGTCCGGATCAACCGACGGCTGGACCCAGCTCACCGGCGGCGG
CGAAGACCGTTTCCCTATGTTCGACCACGATCACCGCGTCGAACGCCACA
ATTCCCACCCGTCGTCGCTCTCGAGGCAACCCGACTGCCATTCGCAGGGA
ATCGCCATGTCCTTCCCGCCGCCGCAGCAGTACTCCCTAGCCGGCCGCCA
CCCGGCAGCCGCGGGGCTGGCCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9036:3621..4594-

>mRNA_S-dermatodea_contig9036.17117.1 ID=mRNA_S-dermatodea_contig9036.17117.1|Name=mRNA_S-dermatodea_contig9036.17117.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at S-dermatodea_contig9036:3621..4594- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCTCGCAGCTGGTGCAGCACCAGAACCAGCAGGAGGAGCAGGGCTGGGG
GGACGGCGGCTGGGGTAAGGACGGCGGCGGCAGGCACTACCACTACCGAG
CACTCGAGTCTCCTACCACGATACGCCCTGAGGGCTCGCAGCTGGTGCAG
CACCAGAACCAGCAGGAGGAGCAGGGCTGGGGGGACGGCGGCTGGGGTAA
GGACGGCGGCGGCAGGCACTACCACTACCGAGCACTCGAGTCTCCTACCA
CGATACGCCCTGAGGAGTCCGGATCAACCGACGGCTGGACCCAGCTCACC
GGCGGCGGCGAAGACCGTTTCCCTATGTTCGACCACGATCACCGCGTCGA
ACGCCACAATTCCCACCCGTCGTCGCTCTCGAGGCAACCCGACTGCCATT
CGCAGGGAATCGCCATGTCCTTCCCGCCGCCGCAGCAGTACTCCCTAGCC
GGCCGCCACCCGGCAGCCGCGGGGCTGGCCGAGTCCGGATCAACCGACGG
CTGGACCCAGCTCACCGGCGGCGGCGAAGACCGTTTCCCTATGTTCGACC
ACGATCACCGCGTCGAACGCCACAATTCCCACCCGTCGTCGCTCTCGAGG
CAACCCGACTGCCATTCGCAGGGAATCGCCATGTCCTTCCCGCCGCCGCA
GCAGTACTCCCTAGCCGGCCGCCACCCGGCAGCCGCGGGGCTGGCC
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