mRNA_S-dermatodea_contig9033.17115.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9033.17115.1
Unique NamemRNA_S-dermatodea_contig9033.17115.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9033.17115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9033contigS-dermatodea_contig9033:2883..3228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925381.3356042-CDS-S-dermatodea_contig9033:2882..29591622925381.3356042-CDS-S-dermatodea_contig9033:2882..2959Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9033 2883..2959 -
1694079895.1229348-CDS-S-dermatodea_contig9033:2882..29591694079895.1229348-CDS-S-dermatodea_contig9033:2882..2959Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9033 2883..2959 -
1622925381.3506505-CDS-S-dermatodea_contig9033:2993..32281622925381.3506505-CDS-S-dermatodea_contig9033:2993..3228Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9033 2994..3228 -
1694079895.1398737-CDS-S-dermatodea_contig9033:2993..32281694079895.1398737-CDS-S-dermatodea_contig9033:2993..3228Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9033 2994..3228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9033.17115.1prot_S-dermatodea_contig9033.17115.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9033 2883..3228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9033.17115.1

>prot_S-dermatodea_contig9033.17115.1 ID=prot_S-dermatodea_contig9033.17115.1|Name=mRNA_S-dermatodea_contig9033.17115.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
PQHNHTTDSSPETKRHTSIVRIKRKTRIAPVRDQYRRVPHSSRNEQKRLP
WYNSSITSHIGPKTPGSVRPVRCTYGACGDAAPTEPPNEGRIHVNLAPPL
PPN*
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mRNA from alignment at S-dermatodea_contig9033:2883..3228-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9033.17115.1 ID=mRNA_S-dermatodea_contig9033.17115.1|Name=mRNA_S-dermatodea_contig9033.17115.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=346bp|location=Sequence derived from alignment at S-dermatodea_contig9033:2883..3228- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCAACACAATCACACCACGGACTCGAGCCCCGAGACAAAACGACACAC
CTCTATTGTACGTATCAAACGCAAAACACGGATTGCACCCGTTCGCGACC
AATACCGCCGTGTACCGCACAGCTCGAGAAACGAACAAAAACGACTACCC
TGGTATAATAGTAGTATCACATCGCATATTGGTCCTAAGACACCTGGGTC
GGTACGCCCTGTCCGATGTACCTATGGCGCATGCGGTANNNNNNNNNNCC
ACAGTTGCTGTACTCACAGGCGACGCCGCACCGACCGAACCGCCCAACGA
AGGGCGGATACACGTCAACCTCGCCCCTCCCCTCCCCCCCAACTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9033:2883..3228-

>mRNA_S-dermatodea_contig9033.17115.1 ID=mRNA_S-dermatodea_contig9033.17115.1|Name=mRNA_S-dermatodea_contig9033.17115.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig9033:2883..3228- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCAACACAATCACACCACGGACTCGAGCCCCGAGACAAAACGACACAC
CTCTATTGTACGTATCAAACGCAAAACACGGATTGCACCCGTTCGCGACC
AATACCGCCGTGTACCGCACAGCTCGAGAAACGAACAAAAACGACTACCC
TGGTATAATAGTAGTATCACATCGCATATTGGTCCTAAGACACCTGGGTC
GGTACGCCCTGTCCGATGTACCTATGGCGCATGCGCCCCAACACAATCAC
ACCACGGACTCGAGCCCCGAGACAAAACGACACACCTCTATTGTACGTAT
CAAACGCAAAACACGGATTGCACCCGTTCGCGACCAATACCGCCGTGTAC
CGCACAGCTCGAGAAACGAACAAAAACGACTACCCTGGTATAATAGTAGT
ATCACATCGCATATTGGTCCTAAGACACCTGGGTCGGTACGCCCTGTCCG
ATGTACCTATGGCGCATGCGGCGACGCCGCACCGACCGAACCGCCCAACG
AAGGGCGGATACACGTCAACCTCGCCCCTCCCCTCCCCCCCAACTAAGCG
ACGCCGCACCGACCGAACCGCCCAACGAAGGGCGGATACACGTCAACCTC
GCCCCTCCCCTCCCCCCCAACTAA
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