mRNA_S-dermatodea_contig9019.17106.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9019.17106.1
Unique NamemRNA_S-dermatodea_contig9019.17106.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9019.17106.1 vs. uniprot
Match: D7FQZ4_ECTSI (Acetohydroxy-acid reductoisomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQZ4_ECTSI)

HSP 1 Score: 405 bits (1040), Expect = 3.740e-137
Identity = 202/222 (90.99%), Postives = 213/222 (95.95%), Query Frame = 1 
Query:    1 QGMSPEEAFKQSSESITGPITKSISKKGILKLYEGLDKAAQEEFKVVYSACYQPAKEIMQECYNEVRSGNEIRSVVMQGARLNEINTGKIDGTFTWKVGEKVRANRVEEEIPLNPFTAGVYVATMMAQIDVLKEGGHSYTEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILEQLAYTAVDDGASVDEKLMSDFASNPVHDAIRV 666
            QGMSPEEAFKQSSESITGPITK ISK GILKLYE LD+A ++EFK VYSACY PAKEIMQECYNEVRSGNEIRSVVMQGARLN+INTGKIDGTFTWKVGE+VRA+RVEEEIPLNPFTAGVYVATMMAQIDVLKEGGHSYTEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILEQLAYTAVD+G++VD+ L+SDF  NPVHDAIRV
Sbjct:  321 QGMSPEEAFKQSSESITGPITKGISKMGILKLYESLDQAGKDEFKSVYSACYAPAKEIMQECYNEVRSGNEIRSVVMQGARLNDINTGKIDGTFTWKVGEQVRADRVEEEIPLNPFTAGVYVATMMAQIDVLKEGGHSYTEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILEQLAYTAVDNGSAVDDSLISDFLENPVHDAIRV 542
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BLAST of mRNA_S-dermatodea_contig9019.17106.1 vs. uniprot
Match: A0A835Z8S5_9STRA (Acetohydroxy-acid reductoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S5_9STRA)

HSP 1 Score: 341 bits (875), Expect = 1.870e-112
Identity = 170/222 (76.58%), Postives = 192/222 (86.49%), Query Frame = 1 
Query:    1 QGMSPEEAFKQSSESITGPITKSISKKGILKLYEGLDKAAQEEFKVVYSACYQPAKEIMQECYNEVRSGNEIRSVVMQGARLNEINTGKIDGTFTWKVGEKVRANRVEEEIPLNPFTAGVYVATMMAQIDVLKEGGHSYTEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILEQLAYTAVDDGASVDEKLMSDFASNPVHDAIRV 666
            +GM+ EEAFKQS ESITGPITK+IS  G+LKLY  L    Q++F++ YSA Y PA+EI+QECY+EV SGNEIRSVVM G RL E   GKIDGT TW+VGEKVRA R E++IPLNPFTAGVYVA MMAQIDVL++ GHSYTEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILEQLAYTAVD+ A +++ L+ DF +NPVHDAIRV
Sbjct:  304 EGMTAEEAFKQSCESITGPITKTISHDGVLKLYNDLSAPDQQQFRIAYSASYLPAREILQECYDEVASGNEIRSVVMHGDRLQEFPIGKIDGTHTWQVGEKVRAARDEDKIPLNPFTAGVYVAVMMAQIDVLRKAGHSYTEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILEQLAYTAVDNDAPINDALIEDFLANPVHDAIRV 525
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BLAST of mRNA_S-dermatodea_contig9019.17106.1 vs. uniprot
Match: W7TPK9_9STRA (Acetohydroxy-acid reductoisomerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPK9_9STRA)

HSP 1 Score: 335 bits (858), Expect = 4.650e-109
Identity = 166/222 (74.77%), Postives = 192/222 (86.49%), Query Frame = 1 
Query:    1 QGMSPEEAFKQSSESITGPITKSISKKGILKLYEGLDKAAQEEFKVVYSACYQPAKEIMQECYNEVRSGNEIRSVVMQGARLNEINTGKIDGTFTWKVGEKVRANRVEEEIPLNPFTAGVYVATMMAQIDVLKEGGHSYTEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILEQLAYTAVDDGASVDEKLMSDFASNPVHDAIRV 666
            +GM+PE+AFK+S+ESITGPITK ISK+G+LKLY  L  A +E F   YSA Y+PA+EI+QE Y+EV SGNEIRSVVM   RL+E   GKIDGT+TW+VGE VRA R E+EIPLNPFTAGVYVATMMAQIDVL++ GHS++EIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYIL+QLAYTAVD+   V+++L+ DF  NPVHDAI V
Sbjct:  320 EGMTPEQAFKESAESITGPITKIISKEGVLKLYNSLSAADKEVFNKAYSATYKPAREILQEIYDEVASGNEIRSVVMHSERLSEFPVGKIDGTYTWQVGETVRAARKEDEIPLNPFTAGVYVATMMAQIDVLRKAGHSFSEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILDQLAYTAVDNSVPVNQELIGDFLKNPVHDAISV 541
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BLAST of mRNA_S-dermatodea_contig9019.17106.1 vs. uniprot
Match: A0A7S2W6X2_9STRA (Acetohydroxy-acid reductoisomerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6X2_9STRA)

HSP 1 Score: 329 bits (843), Expect = 1.690e-107
Identity = 161/222 (72.52%), Postives = 192/222 (86.49%), Query Frame = 1 
Query:    1 QGMSPEEAFKQSSESITGPITKSISKKGILKLYEGLDKAAQEEFKVVYSACYQPAKEIMQECYNEVRSGNEIRSVVMQGARLNEINTGKIDGTFTWKVGEKVRANRVEEEIPLNPFTAGVYVATMMAQIDVLKEGGHSYTEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILEQLAYTAVDDGASVDEKLMSDFASNPVHDAIRV 666
            QGM+PE+AFK S ESITGPITK ISK+GI+ LYEGL    ++ F+  YSA Y P++EI+QECY+EV SGNEIRSV++ GARL+E   GKIDGT+TW+VGEKVRA R E++IPLN FTAGVYVA MMAQIDVL++ GHS++E+VNESVIEAVDSLCPYMH+KGVAFMVDNCS+TARLGSRKWAPRFDYIL+QLAYTA+D GASV+  L+ +F SNPVH AI +
Sbjct:  315 QGMTPEDAFKNSCESITGPITKKISKEGIMALYEGLSDEDKKVFEEAYSASYLPSREILQECYDEVASGNEIRSVILHGARLSEFPIGKIDGTYTWQVGEKVRAARDEDKIPLNSFTAGVYVAMMMAQIDVLRKAGHSFSEVVNESVIEAVDSLCPYMHFKGVAFMVDNCSMTARLGSRKWAPRFDYILDQLAYTAIDKGASVNSDLIQNFKSNPVHKAISI 536
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BLAST of mRNA_S-dermatodea_contig9019.17106.1 vs. uniprot
Match: B7GDA6_PHATC (Acetohydroxy-acid reductoisomerase n=2 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GDA6_PHATC)

HSP 1 Score: 317 bits (812), Expect = 4.330e-103
Identity = 159/220 (72.27%), Postives = 186/220 (84.55%), Query Frame = 1 
Query:    1 QGMSPEEAFKQSSESITGPITKSISKKGILKLYEGLDKAAQEEFKVVYSACYQPAKEIMQECYNEVRSGNEIRSVVMQGARLNEINTGKIDGTFTWKVGEKVRANRVEEEIPLNPFTAGVYVATMMAQIDVLKEGGHSYTEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILEQLAYTAVDDGASVDEKLMSDFASNPVHDAI 660
            QGMSPE+AF +SSESITG I K IS KGI  +YE LD   +E F+  YSA Y+PAKEI+QE Y+EV SGNEIR+V+M GAR+++   GKIDGT TWKVGEKVRA R E++IPLNPFTAGVYVATMMAQIDVL E GH Y+E+VNESVIEAVDSLCPYMHY+GVAFMVDNCS TA+ GSRKWAPRFDYIL+QLAYTAVD+GA V+E+L++DF  + VH A+
Sbjct:  294 QGMSPEQAFLESSESITGNIVKIISTKGIKAVYESLDGDDKETFQKAYSASYKPAKEILQEIYDEVSSGNEIRTVIMHGARIDKYPVGKIDGTDTWKVGEKVRAERDEDKIPLNPFTAGVYVATMMAQIDVLLEEGHPYSEVVNESVIEAVDSLCPYMHYRGVAFMVDNCSFTAKTGSRKWAPRFDYILDQLAYTAVDNGAPVNEQLIADFEKHSVHQAV 513
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BLAST of mRNA_S-dermatodea_contig9019.17106.1 vs. uniprot
Match: A0A7S0WAC1_9CRYP (Acetohydroxy-acid reductoisomerase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WAC1_9CRYP)

HSP 1 Score: 314 bits (804), Expect = 1.460e-101
Identity = 155/222 (69.82%), Postives = 179/222 (80.63%), Query Frame = 1 
Query:    1 QGMSPEEAFKQSSESITGPITKSISKKGILKLYEGLDKAAQEEFKVVYSACYQPAKEIMQECYNEVRSGNEIRSVVMQGARLNEINTGKIDGTFTWKVGEKVRANRVEEEIPLNPFTAGVYVATMMAQIDVLKEGGHSYTEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILEQLAYTAVDDGASVDEKLMSDFASNPVHDAIRV 666
            QGM+PE+AFK S ESITGPITK ISK GI+ +YE      +E+F+  YSA Y PAK+++QE Y+EV+SGNEIRSV+M G R +    GKIDGT+TWKVGEKVRA R E+EIP+NP TAG+YVATMMAQIDVL+EGGHSYTEIVNESVIEAVDSLCPYMH KGVAFMVDNCS TARLGSRKWAPRFDY+LEQ AY  +D    VD+  +  F  NPVH A+ V
Sbjct:  317 QGMTPEDAFKNSCESITGPITKLISKNGIMAVYESFSGKEKEQFEQAYSAAYTPAKDVLQEIYDEVKSGNEIRSVIMHGDRFDRFPIGKIDGTYTWKVGEKVRAARKEDEIPMNPVTAGIYVATMMAQIDVLREGGHSYTEIVNESVIEAVDSLCPYMHAKGVAFMVDNCSRTARLGSRKWAPRFDYMLEQQAYVDLDANKPVDQAKIDKFVKNPVHKAVEV 538
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BLAST of mRNA_S-dermatodea_contig9019.17106.1 vs. uniprot
Match: A0A1Z5JEH0_FISSO (Acetohydroxy-acid reductoisomerase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEH0_FISSO)

HSP 1 Score: 311 bits (796), Expect = 8.140e-101
Identity = 152/220 (69.09%), Postives = 183/220 (83.18%), Query Frame = 1 
Query:    1 QGMSPEEAFKQSSESITGPITKSISKKGILKLYEGLDKAAQEEFKVVYSACYQPAKEIMQECYNEVRSGNEIRSVVMQGARLNEINTGKIDGTFTWKVGEKVRANRVEEEIPLNPFTAGVYVATMMAQIDVLKEGGHSYTEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILEQLAYTAVDDGASVDEKLMSDFASNPVHDAI 660
            QGM+PE+AF ++SESITG I K IS +GI  +YE  + A + EF+  YSA Y PAKEI+QE Y+EV SGNEIR+V+M G R+N+   GKIDGT TW VGEKVRANR E++IP+NPFTAGVY+ATMMAQIDVL E GH Y+E+VNESVIEAVDSLCPYMHY+GVAFMVDNCS TA+ GSRKWAPRFDYIL+QLAYTAVD+G  V+++L+ DF  +PVH A+
Sbjct:  283 QGMTPEQAFLETSESITGKIVKIISTQGIKAVYEQFNDADKAEFQKAYSASYMPAKEILQEIYDEVSSGNEIRTVIMHGKRINKFPVGKIDGTDTWIVGEKVRANRDEDKIPINPFTAGVYIATMMAQIDVLLEAGHPYSEVVNESVIEAVDSLCPYMHYRGVAFMVDNCSFTAKTGSRKWAPRFDYILDQLAYTAVDNGVPVNQQLIKDFEQHPVHSAV 502
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BLAST of mRNA_S-dermatodea_contig9019.17106.1 vs. uniprot
Match: K0TKV8_THAOC (Acetohydroxy-acid reductoisomerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TKV8_THAOC)

HSP 1 Score: 311 bits (796), Expect = 9.110e-101
Identity = 157/220 (71.36%), Postives = 182/220 (82.73%), Query Frame = 1 
Query:    1 QGMSPEEAFKQSSESITGPITKSISKKGILKLYEGLDKAAQEEFKVVYSACYQPAKEIMQECYNEVRSGNEIRSVVMQGARLNEINTGKIDGTFTWKVGEKVRANRVEEEIPLNPFTAGVYVATMMAQIDVLKEGGHSYTEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILEQLAYTAVDDGASVDEKLMSDFASNPVHDAI 660
            QGMSPE+AF +SSESITG I K+IS +GI  +YEGL    +E FK  YSA Y P+KEI+QE Y+EV SGNEIR+V+M G R+N+   GKIDGT TW+VGEKVRA R EE IPLNPFTAGVYVATMMAQIDVL E GH Y+E+VNESVIEAVDSLCPYMHY+GVAFMVDNCS TA+ GSRKWAPRFDYIL+QLAYTAVD+G  V+E L+S F ++ VH A+
Sbjct:  287 QGMSPEQAFVESSESITGNIVKTISTQGIKAVYEGLSGDDKEVFKQAYSASYLPSKEILQEIYDEVSSGNEIRTVIMHGKRINKFPVGKIDGTDTWQVGEKVRAERDEENIPLNPFTAGVYVATMMAQIDVLLEAGHPYSEVVNESVIEAVDSLCPYMHYRGVAFMVDNCSFTAKTGSRKWAPRFDYILDQLAYTAVDNGKPVNEDLISAFENHKVHAAV 506
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BLAST of mRNA_S-dermatodea_contig9019.17106.1 vs. uniprot
Match: A0A1E7FX95_9STRA (Acetohydroxy-acid reductoisomerase n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FX95_9STRA)

HSP 1 Score: 310 bits (795), Expect = 1.610e-100
Identity = 157/220 (71.36%), Postives = 185/220 (84.09%), Query Frame = 1 
Query:    1 QGMSPEEAFKQSSESITGPITKSISKKGILKLYEGLDKAAQEEFKVVYSACYQPAKEIMQECYNEVRSGNEIRSVVMQGARLNEINTGKIDGTFTWKVGEKVRANRVEEEIPLNPFTAGVYVATMMAQIDVLKEGGHSYTEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILEQLAYTAVDDGASVDEKLMSDFASNPVHDAI 660
            QGMS EEAF QSSESITG I K IS +GI  +YEGL+   ++ F+  YSA Y+PAKEI+QE Y+EV SGNEIR+V+M G R+++   GKIDGT TW +GEKVRA R E++IPLNPFTAGVYVATMMAQIDVL E GH Y+E+VNESVIEAVDSLCPYMHYKGVAFMVDNCS TA+ GSRKWAPRFDYIL+QLAYTAVD+GA+V+E L++DF S+ VH A+
Sbjct:  295 QGMSKEEAFLQSSESITGNIVKIISTQGIKAVYEGLEGEDKKIFETAYSASYKPAKEILQEIYDEVSSGNEIRTVIMHGDRIDKYPVGKIDGTDTWILGEKVRAERDEDKIPLNPFTAGVYVATMMAQIDVLLEEGHPYSEVVNESVIEAVDSLCPYMHYKGVAFMVDNCSFTAKTGSRKWAPRFDYILDQLAYTAVDNGAAVNEDLIADFESHKVHQAV 514
[Close]
BLAST of mRNA_S-dermatodea_contig9019.17106.1 vs. uniprot
Match: A0A7S4MXJ6_9STRA (Acetohydroxy-acid reductoisomerase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXJ6_9STRA)

HSP 1 Score: 308 bits (790), Expect = 8.850e-100
Identity = 153/220 (69.55%), Postives = 182/220 (82.73%), Query Frame = 1 
Query:    1 QGMSPEEAFKQSSESITGPITKSISKKGILKLYEGLDKAAQEEFKVVYSACYQPAKEIMQECYNEVRSGNEIRSVVMQGARLNEINTGKIDGTFTWKVGEKVRANRVEEEIPLNPFTAGVYVATMMAQIDVLKEGGHSYTEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILEQLAYTAVDDGASVDEKLMSDFASNPVHDAI 660
            QGMSPE+AF +S ESITG I K+IS +GI  +Y+ L    ++ F+  YSA Y PAKEI+QE Y+EV SGNEIR+V+M G RL++   GKIDGT TWKVGEKVRA+R E+ IPLNPFTAGVYVATMMAQIDVL E GH Y+E+VNESVIEAVDSLCPYMHY+G+AFMVDNCS TA+ GSRKWAPRFDYILEQLAYTAVD+G  VD  L++DF ++ VH+A+
Sbjct:  294 QGMSPEQAFTESCESITGNIVKTISTQGIKAVYDNLSDDDKKVFETSYSASYMPAKEILQEIYDEVASGNEIRTVIMHGDRLDKFPVGKIDGTETWKVGEKVRASRDEDNIPLNPFTAGVYVATMMAQIDVLLEAGHPYSEVVNESVIEAVDSLCPYMHYRGIAFMVDNCSFTAKTGSRKWAPRFDYILEQLAYTAVDNGKEVDADLIADFQNHKVHEAV 513
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9019.17106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQZ4_ECTSI3.740e-13790.99Acetohydroxy-acid reductoisomerase n=2 Tax=Ectocar... [more]
A0A835Z8S5_9STRA1.870e-11276.58Acetohydroxy-acid reductoisomerase n=1 Tax=Tribone... [more]
W7TPK9_9STRA4.650e-10974.77Acetohydroxy-acid reductoisomerase n=2 Tax=Monodop... [more]
A0A7S2W6X2_9STRA1.690e-10772.52Acetohydroxy-acid reductoisomerase n=1 Tax=Rhizoch... [more]
B7GDA6_PHATC4.330e-10372.27Acetohydroxy-acid reductoisomerase n=2 Tax=Phaeoda... [more]
A0A7S0WAC1_9CRYP1.460e-10169.82Acetohydroxy-acid reductoisomerase n=1 Tax=Hemisel... [more]
A0A1Z5JEH0_FISSO8.140e-10169.09Acetohydroxy-acid reductoisomerase n=2 Tax=Fistuli... [more]
K0TKV8_THAOC9.110e-10171.36Acetohydroxy-acid reductoisomerase n=1 Tax=Thalass... [more]
A0A1E7FX95_9STRA1.610e-10071.36Acetohydroxy-acid reductoisomerase n=3 Tax=Bacilla... [more]
A0A7S4MXJ6_9STRA8.850e-10069.55Acetohydroxy-acid reductoisomerase n=1 Tax=Odontel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9019contigS-dermatodea_contig9019:4135..8828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score406.0
Seed ortholog evalue1.1e-110
Seed eggNOG ortholog2880.D7FQZ4
KEGG rclassRC00726,RC00836,RC00837,RC01726
KEGG koko:K00053
KEGG ReactionR03051,R04439,R04440,R05068,R05069,R05071
KEGG Pathwayko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00019,M00570
GOsGO:0000166,GO:0000287,GO:0003674,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0010035,GO:0010038,GO:0030312,GO:0031967,GO:0031975,GO:0036094,GO:0042221,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0046983,GO:0048037,GO:0048046,GO:0050661,GO:0050662,GO:0050896,GO:0070402,GO:0071944,GO:0097159,GO:1901265,GO:1901363
EggNOG free text desc.ketol-acid reductoisomerase activity
EggNOG OGs2QQBF@2759,COG0059@1
EC1.1.1.86
COG Functional cat.EH
BiGG ReactioniRC1080.CRv4_Au5_s10_g343_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size666
Cds size660
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9019.17106.1prot_S-dermatodea_contig9019.17106.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9019 4135..8822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925380.5729384-CDS-S-dermatodea_contig9019:4134..43171622925380.5729384-CDS-S-dermatodea_contig9019:4134..4317Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9019 4135..4317 -
1694079894.5459824-CDS-S-dermatodea_contig9019:4134..43171694079894.5459824-CDS-S-dermatodea_contig9019:4134..4317Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9019 4135..4317 -
1622925380.5838628-CDS-S-dermatodea_contig9019:5634..58261622925380.5838628-CDS-S-dermatodea_contig9019:5634..5826Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9019 5635..5826 -
1694079894.5599556-CDS-S-dermatodea_contig9019:5634..58261694079894.5599556-CDS-S-dermatodea_contig9019:5634..5826Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9019 5635..5826 -
1622925380.594876-CDS-S-dermatodea_contig9019:7499..76551622925380.594876-CDS-S-dermatodea_contig9019:7499..7655Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9019 7500..7655 -
1694079894.5699391-CDS-S-dermatodea_contig9019:7499..76551694079894.5699391-CDS-S-dermatodea_contig9019:7499..7655Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9019 7500..7655 -
1622925380.6047134-CDS-S-dermatodea_contig9019:8693..88221622925380.6047134-CDS-S-dermatodea_contig9019:8693..8822Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9019 8694..8822 -
1694079894.5922873-CDS-S-dermatodea_contig9019:8693..88221694079894.5922873-CDS-S-dermatodea_contig9019:8693..8822Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9019 8694..8822 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925380.6168003-UTR-S-dermatodea_contig9019:8822..88281622925380.6168003-UTR-S-dermatodea_contig9019:8822..8828Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9019 8823..8828 -
1694079894.604311-UTR-S-dermatodea_contig9019:8822..88281694079894.604311-UTR-S-dermatodea_contig9019:8822..8828Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9019 8823..8828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9019.17106.1

>prot_S-dermatodea_contig9019.17106.1 ID=prot_S-dermatodea_contig9019.17106.1|Name=mRNA_S-dermatodea_contig9019.17106.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=220bp
MSPEEAFKQSSESITGPITKSISKKGILKLYEGLDKAAQEEFKVVYSACY
QPAKEIMQECYNEVRSGNEIRSVVMQGARLNEINTGKIDGTFTWKVGEKV
RANRVEEEIPLNPFTAGVYVATMMAQIDVLKEGGHSYTEIVNESVIEAVD
SLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILEQLAYTAVDDGAS
VDEKLMSDFASNPVHDAIRV
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mRNA from alignment at S-dermatodea_contig9019:4135..8828-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9019.17106.1 ID=mRNA_S-dermatodea_contig9019.17106.1|Name=mRNA_S-dermatodea_contig9019.17106.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4694bp|location=Sequence derived from alignment at S-dermatodea_contig9019:4135..8828- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGTATGAGTCCCGAGGAGGCGTTCAAGCAGTCCTCCGAGTCCATCAC
GGGCCCCATCACTAAAAGTATCAGCAAGAAGGGTATCCTGAAGTTGTACG
AGGGGCTTGACAAGGCCGCACAGGAAGAGTTTAAGGTGAGCGAGAGATAG
AGATGCCAGTTCGTGCCTTGTGGTATATGTGTGTGTTGAGGACGAGCGTT
TTTTTTTAAACAACGATGCTCTCTCTCCTCGGTTTCCAGGCGCCCAGGCA
GAATCGTGACTGTCGGCTCGCCGGGCTTACGTTCTGCTGAGCAAAGTGTT
GCGCTTGGGGCGTCAATCGCCTGGACCGTGTTATATACTGTATGCTAAAG
ATAGTTTCTTTCGGGCGGCCGAATAATATATATGATACGTTTGTACAGTA
TCAGTTTTGTGTAGAATGGTAAAGCCCACCCTGGCCCTGTCTTGTTCCGA
TGTGTTCCGGATTGTACACGTTCTGTTTTCTGTTTTATTTATTAGCACAT
AAATATTACCCCAATAGGGGGGGGCGGTTACAGGGTAATGATACGTTACT
GATTAAAGACACGACTACGGTAACCGGCGATGACTTACTTCGAAGTGAAT
AGTATGTATTTTCACGTGATGAGAGCGCCATTAGCGGTTCCCGGCAGGGT
ATGGTATTGCGGAGGAACGTATTATAGTTAACTTTCACAGGTCCAAAATT
GCCACAAGTCTCAACCTAGAGAAACAAGAATGGGCCGGAATTGTCGATAT
TTCAAGGTCGATGTTCTTGAATATGGCCGTATCTCGTGCTTTTTGTTTTT
CGTGAGGTTTTTGTTGTTGTTTGACTCTTTGCATGTCTGACCACAAGTCG
GGTCGGATTATGCCGATCGGCTATACGTGTGCAAATCAATCAATCAATCA
ATCAATCAAATTGGGTATATATGGTTTTCATGGTCGGAACAGTTGGGTAT
TGTATTGTGTCCATGGTGGTGACATTTGGTCCTAATGACTTGATTGTAGT
GTACCTCCGTAGTAACACACCTCTGGAAGCTTCCATTACGTGCGGATGGT
CTAGCACTACCGTACATGCATGAGCTTATGACATGACATGACATGATATT
AATAGTCATCGTGCAATCACCTTTTGTCTTACACAGCAAAAACCAACGCG
CACGAACAAACCACATGTTACAGGTTGTGTACTCAGCGTGCTACCAGCCG
GCGAAGGAGATCATGCAGGAGTGCTACAACGAGGTTCGCAGCGGAAACGA
GATCCGCTCCGTGGTCATGCAGGGCGCGCGCCTTAACGAGATCAACACCG
GGAAGATCGACGGGACCTTCACCTGGAAGGTGACGGGACGACTGCTTCAT
GCTTCATAGCTATCCCCCCTTGAAGCAATAAACTATTTATATAACACAAC
GCTCGGTGAGGCACCCACGAGGCAGTGTAACCCATGGCTGTCTCTGGAAG
TGGCGACACCAGATAATAAAGCTGCTCATTCGAGGCTGTCATCCATAACC
AAGATAAAATTAGTTCGGTCTAGGCCGAACACGAACACTCTTAGCATGAT
GCAGTTCACCCTTCATGCGACTCGCCGAACACATCACGGCGATTCGCGCT
TGGTGGAAGAGAGCCTGGTCCGGCGAAAACCCGGCGTGCTCCGTCCTCGC
TTTGTAGAGATGCGAGGTCTATGGTCTAACGACTACGGCATGCTTAACAT
TGAGTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCACAAAAAAA
AAAAAAAAATAAGGAACGGCAAAAAAACAACCACAANNNNNNNNNNAACC
CGCGGGCCTCCGCCCCCCGTTTGTGGGGAGGGGAGGTTTTTGGCCTAACA
AACCCCGGATGTTTAAAAATAACTTCCCCCCCCCCCCCCCCCCCTCGCTA
CCACAAACAAATAAACAAGTAACGACGTGTAGGCCAGAAAACGGTACACT
ATGTAGATTGCCAGGCCAAGACTGGACTGGTTTCCACAACTGGTTTTATT
ATTTTTGTTGAAGACTCTTTTGTAGATTTTTTTAGTTTTTCTGTTCCTTC
GTCAATTTTTTTTTATTTTTTATTTTTTTTTATTCGCTCCCAACCGCCCG
GACGAATGTACCCTGGGCAACCCGCGGTCTCGGGTATGCCTTCCTTCTCT
TCTCCCACACGCCCGTCCATGCCATGCCCTCGTTTTCTTGTAATCGCGCA
AGTGGGGTGTGTTCAGTCGGCGCGCCATAAGCTTTCCCCGTTTTTCATGG
GATATTCGTTGCCTACTCGCCCTTTTTTTGCGGTTTTCCGGGCGGAATCA
CTCGTTTTTTTTGCTGTTTTTTTTTTGCCGCGTGCTGTTTTTCTGGATCC
GTCCGTACAGAGCCATCGCTTTCGCTTCCGATTATAGTAAGGCAAACTAT
TGCTGAGGTACACAGTTATCAAGTCCAATTTCTGCTCAATATCAGCGTAT
TCAAGTATTATTTGTAAACGTTGGCCCGAACGAACCGAACACCTTGTAAA
AAAAATATGGTTAGTTAAAAAAAAAAAAACAGGCCGGTAGATCGCAGATG
TTGTGAGGTCATCTGACCATATATGAGTGTTGCTGTTTAGTACGGTGGGC
GTACTTGTTTTTGGCACGTTTGGTCTTGGGTTACGTTCACAATCGCTCTT
TAGTAAATAATAAAAGATACGGGCGAAAGATATGCACATTCGTGTGAAGA
AAGTCAATCAAGGAGTTGTTTTTTGTTTTTGTTTTTTTTAGATAACAACA
CATACATTCATTCATATTCTCCCCCCCCCCCCCCCCCTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTCTTCTCCCATTTGGGGGGAAAGTGCTGGACTC
TACTGGTGGGGGAGGAAAACACACTCATCCNNNNNNNNNNTTTTTTTTTT
TTTTGTTTTTTTTTGATAAAAAATACTACTTTTTTTTTTTTTTTCCCCCC
CCCCCCCCCCTTTTTTTTTCTTTTTTTGTGTGCTTTTCCCTCCCTTCAAC
AGGTCGGAGAGAAGGTCCGCGCTAACCGTGTGGAGGAAGAAATCCCCCTT
AACCCTTTCACGGCCGGCGTGTACGTGGCCACCATGATGGCCCAGATCGA
CGTCCTTAAGGAGGGAGGGCACTCGTACACGGAGATCGTGAACGAGTCTG
TTATCGAGGCCGTTGACTCGCTGTGCCCCTACATGCACTACAAGGTGGGG
GTGGCTTTGCGGCATATTTATTTGTTTTTTAATGGTGGGGGGTGGGGGGG
GGCTTGGCATGAGGGGGGGGGGGTCTATTTCATGCCCTTGTTTTTAAAAG
CATGATGCGTTTTGTTCTTGTACACTCGAGTATGTTGTAGTGCTCTTTCT
GTGTAAGTAATTCAACAATTTTTAATGTACAGCTGGTCGGGTTTCCTATT
GTATAGCATTTTCGTCGGCTTTCGTTGGTGCGCGTTGTCTGTCTTGTGTG
TACTGTAAACCTTTAAAAAAAAAAAAACAACAACAACAACCAGGTAACAA
AAGTCGTGGGTTTCCTAATAATATATAGGCATATTTCGCTTCGCGGCGTT
CTTTGTGTCGTTTGTTTCTTTCGTTTTTTCATTCGACGATCCCATCCTTC
CAGGGCGTGGCCGTTTTGAGTTGATAGATTTGAGTGAATGGTTGATTACC
ACACCCATTACCGACCGGCCCGCCAATGGTGCCCATCCGGCTCTTGGTCA
GGTGATGAATCGAGAAGTCGATGGTGGACTACTGCTGTTGTAACACTCTG
TTCCACCACACCACCTCAGTCGCGCCCCCCATCATATCATATATCTCGAT
TGAAAACACGTATGATACTTGTAGTAGTGCACTCAATTTATCTCTACTCT
AAATATTCTGTCCTAACAGCACTTTTCAAAAGCAAAAAATAAAATGTGCA
ACGAAAATTTCCAACCAATCAAACGTTTGTGTGTATTTTGTTTTTCCCTA
TTAATAGTAGTATTATAGTGAGTAGCCACGGCAACGCCTGTGAGGTGTGC
GTTGGCATAAATTACTACTGTTACGGGAGACTAGGCCATAGTTAACTTTA
ACAGGTCCAAATTAGCTATTGTAATACACAAGTCTCAACCTAGAAAAATC
AAAATAGGCTGGAATTATCAATTATCGAGATTTCCAGGTCGATGTTTTTG
TGTATGGCCATATCTCGTGTTGTTTTTCGTGGTTCATGAGATTTTCGTCG
TTGTTTAGGTATTGATGGTCGGAATAGTTGGGTATTGTATTGTATTGTAT
TGTATTGTATGCATGGTCATGAGATTTGGTCCTGATTAGTGTGTACACCT
CCGTAATATATTAATTTACCACTCTTAAATCCCTATGGCGCTTGGCGTCA
CAAATTGTATAGGAAATTTGGCATCACAGGTCAATTCTAAATCGCTGTTA
AAAAATGGGCAAAGCGCTATCAATTAATTCATAAAGATGTGTTAACATTT
TAAGCTTCGCTGCATTCGTGTGTGTGTGTGCGTGTACTTTGCGATCAATT
AATCGATCCAGGGTGTGGCGTTCATGGTAGACAACTGCTCCATCACGGCC
CGCCTGGGTTCTCGCAAGTGGGCGCCCCGCTTCGACTACATCTTGGAGCA
GTTGGCCTACACGGCCGTCGATGACGGGGCATCTGTGGACGAAAAGCTCA
TGAGCGACTTCGCGAGCAACCCGGTGCACGACGCGATCCGGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9019:4135..8828-

>mRNA_S-dermatodea_contig9019.17106.1 ID=mRNA_S-dermatodea_contig9019.17106.1|Name=mRNA_S-dermatodea_contig9019.17106.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at S-dermatodea_contig9019:4135..8828- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGTCCCGAGGAGGCGTTCAAGCAGTCCTCCGAGTCCATCACGGGCCC
CATCACTAAAAGTATCAGCAAGAAGGGTATCCTGAAGTTGTACGAGGGGC
TTGACAAGGCCGCACAGGAAGAGTTTAAGATGAGTCCCGAGGAGGCGTTC
AAGCAGTCCTCCGAGTCCATCACGGGCCCCATCACTAAAAGTATCAGCAA
GAAGGGTATCCTGAAGTTGTACGAGGGGCTTGACAAGGCCGCACAGGAAG
AGTTTAAGGTTGTGTACTCAGCGTGCTACCAGCCGGCGAAGGAGATCATG
CAGGAGTGCTACAACGAGGTTCGCAGCGGAAACGAGATCCGCTCCGTGGT
CATGCAGGGCGCGCGCCTTAACGAGATCAACACCGGGAAGATCGACGGGA
CCTTCACCTGGAAGGTTGTGTACTCAGCGTGCTACCAGCCGGCGAAGGAG
ATCATGCAGGAGTGCTACAACGAGGTTCGCAGCGGAAACGAGATCCGCTC
CGTGGTCATGCAGGGCGCGCGCCTTAACGAGATCAACACCGGGAAGATCG
ACGGGACCTTCACCTGGAAGGTCGGAGAGAAGGTCCGCGCTAACCGTGTG
GAGGAAGAAATCCCCCTTAACCCTTTCACGGCCGGCGTGTACGTGGCCAC
CATGATGGCCCAGATCGACGTCCTTAAGGAGGGAGGGCACTCGTACACGG
AGATCGTGAACGAGTCTGTTATCGAGGCCGTTGACTCGCTGTGCCCCTAC
ATGCACTACAAGGTCGGAGAGAAGGTCCGCGCTAACCGTGTGGAGGAAGA
AATCCCCCTTAACCCTTTCACGGCCGGCGTGTACGTGGCCACCATGATGG
CCCAGATCGACGTCCTTAAGGAGGGAGGGCACTCGTACACGGAGATCGTG
AACGAGTCTGTTATCGAGGCCGTTGACTCGCTGTGCCCCTACATGCACTA
CAAGGGTGTGGCGTTCATGGTAGACAACTGCTCCATCACGGCCCGCCTGG
GTTCTCGCAAGTGGGCGCCCCGCTTCGACTACATCTTGGAGCAGTTGGCC
TACACGGCCGTCGATGACGGGGCATCTGTGGACGAAAAGCTCATGAGCGA
CTTCGCGAGCAACCCGGTGCACGACGCGATCCGGGTGGGTGTGGCGTTCA
TGGTAGACAACTGCTCCATCACGGCCCGCCTGGGTTCTCGCAAGTGGGCG
CCCCGCTTCGACTACATCTTGGAGCAGTTGGCCTACACGGCCGTCGATGA
CGGGGCATCTGTGGACGAAAAGCTCATGAGCGACTTCGCGAGCAACCCGG
TGCACGACGCGATCCGGGTG
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