mRNA_S-dermatodea_contig9017.17104.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9017.17104.1
Unique NamemRNA_S-dermatodea_contig9017.17104.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9017.17104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9017contigS-dermatodea_contig9017:5167..5890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size305
Cds size192
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9017.17104.1prot_S-dermatodea_contig9017.17104.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9017 5278..5890 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925380.4636111-UTR-S-dermatodea_contig9017:5166..52771622925380.4636111-UTR-S-dermatodea_contig9017:5166..5277Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9017 5167..5277 -
1694079894.4822161-UTR-S-dermatodea_contig9017:5166..52771694079894.4822161-UTR-S-dermatodea_contig9017:5166..5277Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9017 5167..5277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925380.478246-CDS-S-dermatodea_contig9017:5277..52921622925380.478246-CDS-S-dermatodea_contig9017:5277..5292Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9017 5278..5292 -
1694079894.4926026-CDS-S-dermatodea_contig9017:5277..52921694079894.4926026-CDS-S-dermatodea_contig9017:5277..5292Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9017 5278..5292 -
1622925380.4887114-CDS-S-dermatodea_contig9017:5713..58901622925380.4887114-CDS-S-dermatodea_contig9017:5713..5890Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9017 5714..5890 -
1694079894.5025163-CDS-S-dermatodea_contig9017:5713..58901694079894.5025163-CDS-S-dermatodea_contig9017:5713..5890Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9017 5714..5890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9017.17104.1

>prot_S-dermatodea_contig9017.17104.1 ID=prot_S-dermatodea_contig9017.17104.1|Name=mRNA_S-dermatodea_contig9017.17104.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=64bp
PPDGPPPGFGGGGGGQSSSSRYEALQSATASGGVTVPGYGAIAAGAGLQL
HRPHSSGSQDGRG*
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mRNA from alignment at S-dermatodea_contig9017:5167..5890-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9017.17104.1 ID=mRNA_S-dermatodea_contig9017.17104.1|Name=mRNA_S-dermatodea_contig9017.17104.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=724bp|location=Sequence derived from alignment at S-dermatodea_contig9017:5167..5890- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCACCAGACGGGCCTCCGCCAGGATTCGGCGGCGGCGGCGGCGGTCAATC
GTCGTCGTCACGGTATGAAGCACTACAGTCGGCGACCGCGTCGGGTGGTG
TGACCGTTCCTGGATACGGAGCGATCGCAGCGGGAGCAGGGTTGCAGTTG
CACCGTCCACACTCGTCGGGCTCGCAGGTGTGTTTTCGCGGCGTTGTCAC
AGGAGTGTGGCGGGAGTGTCATACCGCGGGACATGTTTGTCTTTTGCGTT
GTTTTGTTTTATTTTCCCTCTCCGCGACTGTCTCCTCGGCCGCAACGGAC
CCCGCTGCACACGTGATTTTTGTCTACGGGGCGAGTGCTTCGAGGTGCAT
ACGGAAACATGTCGCAACGGGCCTTGCCGTTTTCGAGTAGAAGATAGGGC
TGCGGCGGCCCTTTTGAGGTGTGGGCGTTCGTGCCCCAGAGCGATCCCCC
GTCCGGGTCCATCAGTGTGCTTGGTAGTCCTACACCGATGAACGTCCGTG
TTGCCTTTACTACGCTCCAATGCCGCTCCTACCTTCTTCCATGACCCGCC
CCCGCCTCCCCATCCCTCAAACCCACGGCCGTGTTTTTTGTTCTGCAGGA
TGGCCGAGGGTAGCTTCCGGCAGGGAGGCCAATGCCCCCGCGATGCCGGG
CTTTCCGCACGGCGTCGTGGGCGTTTTGAGCGGTGGGTTTGGCGCCTCGG
GGTGGGGGCGGGATCCGAAGCGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9017:5167..5890-

>mRNA_S-dermatodea_contig9017.17104.1 ID=mRNA_S-dermatodea_contig9017.17104.1|Name=mRNA_S-dermatodea_contig9017.17104.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at S-dermatodea_contig9017:5167..5890- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCACCAGACGGGCCTCCGCCAGGATTCGGCGGCGGCGGCGGCGGTCAATC
GTCGTCGTCACGGTATGAAGCACTACAGTCGGCGACCGCGTCGGGTGGTG
TGACCGTTCCTGGATACGGAGCGATCGCAGCGGGAGCAGGGTTGCAGTTG
CACCGTCCACACTCGTCGGGCTCGCAGCCACCAGACGGGCCTCCGCCAGG
ATTCGGCGGCGGCGGCGGCGGTCAATCGTCGTCGTCACGGTATGAAGCAC
TACAGTCGGCGACCGCGTCGGGTGGTGTGACCGTTCCTGGATACGGAGCG
ATCGCAGCGGGAGCAGGGTTGCAGTTGCACCGTCCACACTCGTCGGGCTC
GCAGGATGGCCGAGGGTAGGATGGCCGAGGGTAG
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