mRNA_S-dermatodea_contig90165.17103.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig90165.17103.1
Unique NamemRNA_S-dermatodea_contig90165.17103.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig90165.17103.1 vs. uniprot
Match: A0A151SGA8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SGA8_CAJCA)

HSP 1 Score: 60.5 bits (145), Expect = 5.170e-10
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    1 FGQKYGVDYFDMFAATPSVSSIKVVLAIAAHNDWPLYRLDVMQAFVRAPLD 153
            F Q YGVDY + FA    +SSI+V+L++AA+ DWPLY+LD+  AF+   L+
Sbjct:   92 FTQSYGVDYEETFALVAKLSSIRVILSLAANLDWPLYQLDIKNAFLNGELE 142          
BLAST of mRNA_S-dermatodea_contig90165.17103.1 vs. uniprot
Match: A0A2I0B7Z4_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0B7Z4_9ASPA)

HSP 1 Score: 57.8 bits (138), Expect = 2.230e-8
Identity = 22/53 (41.51%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    1 FGQKYGVDYFDMFAATPSVSSIKVVLAIAAHNDWPLYRLDVMQAFVRAPLDTD 159
            F Q YG+DY + FA    +++++V+L++A + DWP+Y+LDV  AF+   LD +
Sbjct:  877 FTQSYGIDYQETFAPVAKLNTVRVLLSLAVNQDWPIYQLDVKNAFLNGDLDEE 929          
BLAST of mRNA_S-dermatodea_contig90165.17103.1 vs. uniprot
Match: A0A146H565_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H565_MYCCL)

HSP 1 Score: 57.4 bits (137), Expect = 3.050e-8
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    1 FGQKYGVDYFDMFAATPSVSSIKVVLAIAAHNDWPLYRLDVMQAFVRAPLDTD 159
            F Q  GVDY++ FA T  ++SI++VLAIAA NDW +   D   A++   LDTD
Sbjct: 1134 FTQVQGVDYYETFAPTAKIASIRLVLAIAARNDWDIDMFDFNSAYLNGELDTD 1186          
BLAST of mRNA_S-dermatodea_contig90165.17103.1 vs. uniprot
Match: A0A7N2KRT0_QUELO (Integrase catalytic domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2KRT0_QUELO)

HSP 1 Score: 57.0 bits (136), Expect = 4.170e-8
Identity = 23/53 (43.40%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 FGQKYGVDYFDMFAATPSVSSIKVVLAIAAHNDWPLYRLDVMQAFVRAPLDTD 159
            F Q YG+DY + FA    ++SI+V++++AA+ DWPL++LDV  AF+   L+ +
Sbjct:  916 FTQTYGIDYKETFAPVAKMNSIRVLISLAANQDWPLHQLDVKNAFLHGDLEEE 968          
BLAST of mRNA_S-dermatodea_contig90165.17103.1 vs. uniprot
Match: A0A7N2N4W9_QUELO (Integrase catalytic domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2N4W9_QUELO)

HSP 1 Score: 57.0 bits (136), Expect = 4.180e-8
Identity = 23/53 (43.40%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 FGQKYGVDYFDMFAATPSVSSIKVVLAIAAHNDWPLYRLDVMQAFVRAPLDTD 159
            F Q YG+DY + FA    ++SI+V++++AA+ DWPL++LDV  AF+   L+ +
Sbjct: 1487 FTQTYGIDYKETFAPVAKMNSIRVLISLAANQDWPLHQLDVKNAFLHGDLEEE 1539          
BLAST of mRNA_S-dermatodea_contig90165.17103.1 vs. uniprot
Match: A0A251UKK1_HELAN (Putative reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UKK1_HELAN)

HSP 1 Score: 56.6 bits (135), Expect = 5.670e-8
Identity = 23/51 (45.10%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 FGQKYGVDYFDMFAATPSVSSIKVVLAIAAHNDWPLYRLDVMQAFVRAPLD 153
            F Q+YG+DY D F+    +++I+VV+A+AA N W L+++DV  AF+   LD
Sbjct:  267 FSQQYGIDYEDTFSPVAKITTIRVVIAVAASNGWKLHQMDVKNAFLYGDLD 317          
BLAST of mRNA_S-dermatodea_contig90165.17103.1 vs. uniprot
Match: A0A0L9TNI1_PHAAN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9TNI1_PHAAN)

HSP 1 Score: 53.9 bits (128), Expect = 7.350e-8
Identity = 21/53 (39.62%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    1 FGQKYGVDYFDMFAATPSVSSIKVVLAIAAHNDWPLYRLDVMQAFVRAPLDTD 159
            + Q YG+DY D F+     S+++++LA+AA   WPLY+LD+  AF+   L+ +
Sbjct:   54 YTQVYGIDYCDTFSPVAKTSTVRILLAMAAIRHWPLYQLDIKNAFLHGDLEEE 106          
BLAST of mRNA_S-dermatodea_contig90165.17103.1 vs. uniprot
Match: A0A438ED81_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438ED81_VITVI)

HSP 1 Score: 56.2 bits (134), Expect = 7.710e-8
Identity = 22/53 (41.51%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    1 FGQKYGVDYFDMFAATPSVSSIKVVLAIAAHNDWPLYRLDVMQAFVRAPLDTD 159
            F Q YG+DY + FA    ++SI+++L++A H +WPL++LDV  AF+   L+ +
Sbjct:  165 FPQTYGIDYQETFALVAKINSIRILLSLAVHFNWPLHQLDVKNAFLNGDLEEE 217          
BLAST of mRNA_S-dermatodea_contig90165.17103.1 vs. uniprot
Match: A0A438FWS1_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FWS1_VITVI)

HSP 1 Score: 56.2 bits (134), Expect = 7.740e-8
Identity = 24/53 (45.28%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    1 FGQKYGVDYFDMFAATPSVSSIKVVLAIAAHNDWPLYRLDVMQAFVRAPLDTD 159
            F Q YGVDY + FA    +++++V+ +IA +NDWPLY+LDV  AF+   L+ +
Sbjct:  174 FMQTYGVDYQETFAPVAKLNTVQVLHSIAVNNDWPLYQLDVKNAFLNGDLNEE 226          
BLAST of mRNA_S-dermatodea_contig90165.17103.1 vs. uniprot
Match: A0A5D3DQY9_CUCME (Cysteine-rich RLK (Receptor-like protein kinase) 8 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DQY9_CUCME)

HSP 1 Score: 56.2 bits (134), Expect = 7.780e-8
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:    1 FGQKYGVDYFDMFAATPSVSSIKVVLAIAAHNDWPLYRLDVMQAFVRAPL 150
            F Q YGVDY + F+    ++++KV+L++A + DWPLY+LDV  AF    L
Sbjct:  490 FSQTYGVDYSETFSPVAKLNTVKVLLSVAVNKDWPLYQLDVKNAFSNGDL 539          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig90165.17103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151SGA8_CAJCA5.170e-1050.98Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0B7Z4_9ASPA2.230e-841.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A146H565_MYCCL3.050e-849.06Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473... [more]
A0A7N2KRT0_QUELO4.170e-843.40Integrase catalytic domain-containing protein n=1 ... [more]
A0A7N2N4W9_QUELO4.180e-843.40Integrase catalytic domain-containing protein n=1 ... [more]
A0A251UKK1_HELAN5.670e-845.10Putative reverse transcriptase, RNA-dependent DNA ... [more]
A0A0L9TNI1_PHAAN7.350e-839.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438ED81_VITVI7.710e-841.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FWS1_VITVI7.740e-845.28Retrovirus-related Pol polyprotein from transposon... [more]
A0A5D3DQY9_CUCME7.780e-846.00Cysteine-rich RLK (Receptor-like protein kinase) 8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig90165contigS-dermatodea_contig90165:448..608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size161
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925380.4246266-CDS-S-dermatodea_contig90165:447..6061622925380.4246266-CDS-S-dermatodea_contig90165:447..606Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90165 448..606 +
1694079894.4716315-CDS-S-dermatodea_contig90165:447..6061694079894.4716315-CDS-S-dermatodea_contig90165:447..606Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90165 448..606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig90165.17103.1prot_S-dermatodea_contig90165.17103.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig90165 448..606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig90165.17103.1

>prot_S-dermatodea_contig90165.17103.1 ID=prot_S-dermatodea_contig90165.17103.1|Name=mRNA_S-dermatodea_contig90165.17103.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=53bp
FGQKYGVDYFDMFAATPSVSSIKVVLAIAAHNDWPLYRLDVMQAFVRAPL
DTD
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mRNA from alignment at S-dermatodea_contig90165:448..608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig90165.17103.1 ID=mRNA_S-dermatodea_contig90165.17103.1|Name=mRNA_S-dermatodea_contig90165.17103.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=161bp|location=Sequence derived from alignment at S-dermatodea_contig90165:448..608+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTGGACAGAAGTATGGCGTAGACTACTTCGATATGTTTGCCGCCACCCC ATCCGTTTCGTCCATCAAGGTGGTGCTGGCCATTGCCGCTCACAACGACT GGCCGTTATATCGTCTAGATGTGATGCAGGCATTTGTTAGGGCTCCGCTT GACACAGATGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig90165:448..608+

>mRNA_S-dermatodea_contig90165.17103.1 ID=mRNA_S-dermatodea_contig90165.17103.1|Name=mRNA_S-dermatodea_contig90165.17103.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at S-dermatodea_contig90165:448..608+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTGGACAGAAGTATGGCGTAGACTACTTCGATATGTTTGCCGCCACCCC
ATCCGTTTCGTCCATCAAGGTGGTGCTGGCCATTGCCGCTCACAACGACT
GGCCGTTATATCGTCTAGATGTGATGCAGGCATTTGTTAGGGCTCCGCTT
GACACAGATTTTGGACAGAAGTATGGCGTAGACTACTTCGATATGTTTGC
CGCCACCCCATCCGTTTCGTCCATCAAGGTGGTGCTGGCCATTGCCGCTC
ACAACGACTGGCCGTTATATCGTCTAGATGTGATGCAGGCATTTGTTAGG
GCTCCGCTTGACACAGAT
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