mRNA_S-dermatodea_contig90148.17101.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig90148.17101.1
Unique NamemRNA_S-dermatodea_contig90148.17101.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig90148.17101.1 vs. uniprot
Match: D7FHV3_ECTSI (Phosphatidylinositol glycan anchor biosynthesis, class Q n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV3_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 5.300e-34
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:    1 SSLLGSLWQLFRGRKRNVLRRRVDTCMYDACQLLLGTLVFTVLFFLSPTIAVYYTFFCIVQAVAVGGQV 207
            SSLLGSLWQLFRGRKRNVLR RVDTCMYDACQLLLGTLVFTVL FL+PTI+VYYTFFCIVQAVAVGGQV
Sbjct:  275 SSLLGSLWQLFRGRKRNVLRCRVDTCMYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQAVAVGGQV 343
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BLAST of mRNA_S-dermatodea_contig90148.17101.1 vs. uniprot
Match: A0A6H5K7D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7D0_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.360e-33
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:    1 SSLLGSLWQLFRGRKRNVLRRRVDTCMYDACQLLLGTLVFTVLFFLSPTIAVYYTFFCIVQAVAVGGQ 204
            SSLLGSLWQLFRGRKRNVLR RVDTCMYDACQLLLGTLVFTVL FL+PTI+VYYTFFCIVQAVAVGGQ
Sbjct:  197 SSLLGSLWQLFRGRKRNVLRCRVDTCMYDACQLLLGTLVFTVLSFLTPTISVYYTFFCIVQAVAVGGQ 264
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BLAST of mRNA_S-dermatodea_contig90148.17101.1 vs. uniprot
Match: A0A7S1CDH3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDH3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 8.150e-18
Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    4 SLLGSLWQLFRGRKRNVLRRRVDTCMYDACQLLLGTLVFTVLFFLSPTIAVYYTFFCIVQAV 189
            S++GSLW+LFRG+KRNVLR RVD+C YD  QLL+GTL+FTVLFFL PT  VYY FF  V  +
Sbjct:  243 SVIGSLWRLFRGKKRNVLRHRVDSCDYDVPQLLVGTLLFTVLFFLFPTSLVYYIFFTAVHLI 304
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BLAST of mRNA_S-dermatodea_contig90148.17101.1 vs. uniprot
Match: W4HAQ0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAQ0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.210e-16
Identity = 37/67 (55.22%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    7 LLGSLWQLFRGRKRNVLRRRVDTCMYDACQLLLGTLVFTVLFFLSPTIAVYYTFFCIVQAVAVGGQV 207
            LL SLW+LF G+K+N+LR RVD+C YD  Q+L+GTL+FT++FF+  T +VYY +FC+V+ + +G QV
Sbjct:  434 LLSSLWRLFLGKKKNLLRNRVDSCEYDVTQMLVGTLLFTIVFFVVATNSVYYLYFCLVRCIVLGIQV 500
[Close]
BLAST of mRNA_S-dermatodea_contig90148.17101.1 vs. uniprot
Match: A0A8C4R5D0_EPTBU (Phosphatidylinositol glycan anchor biosynthesis, class Q n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4R5D0_EPTBU)

HSP 1 Score: 82.0 bits (201), Expect = 1.250e-16
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:   10 LGSLWQLFRGRKRNVLRRRVDTCMYDACQLLLGTLVFTVLFFLSPTIAVYYTFFCIVQAVAVGGQV 207
            L SLW+LFRG+K NVLR RVD+C YD  QL LGTL+FT+L FL PT A++Y  F +++ + +GGQV
Sbjct:  440 LSSLWRLFRGKKWNVLRHRVDSCQYDVDQLFLGTLLFTILLFLLPTTALFYLVFTLLRLMVIGGQV 505
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BLAST of mRNA_S-dermatodea_contig90148.17101.1 vs. uniprot
Match: A0A397BLX3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BLX3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.130e-16
Identity = 36/66 (54.55%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    7 LLGSLWQLFRGRKRNVLRRRVDTCMYDACQLLLGTLVFTVLFFLSPTIAVYYTFFCIVQAVAVGGQ 204
            LL SLW+LF G+K+N+LR RVD+C YD  Q+L+GTL+FT++FF+  T +VYY +FC+V+ + +G Q
Sbjct:  297 LLSSLWRLFLGKKKNLLRNRVDSCEYDVTQMLVGTLLFTIVFFVVATNSVYYLYFCLVRCIVLGIQ 362
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BLAST of mRNA_S-dermatodea_contig90148.17101.1 vs. uniprot
Match: A0A418CBU4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418CBU4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.180e-16
Identity = 36/66 (54.55%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    7 LLGSLWQLFRGRKRNVLRRRVDTCMYDACQLLLGTLVFTVLFFLSPTIAVYYTFFCIVQAVAVGGQ 204
            LL SLW+LF G+K+N+LR RVD+C YD  Q+L+GTL+FT++FF+  T +VYY +FC+V+ + +G Q
Sbjct:   45 LLSSLWRLFLGKKKNLLRNRVDSCEYDVTQMLVGTLLFTIVFFVVATNSVYYLYFCLVRCIVLGIQ 110
[Close]
BLAST of mRNA_S-dermatodea_contig90148.17101.1 vs. uniprot
Match: W4H8F6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8F6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.200e-16
Identity = 36/66 (54.55%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    7 LLGSLWQLFRGRKRNVLRRRVDTCMYDACQLLLGTLVFTVLFFLSPTIAVYYTFFCIVQAVAVGGQ 204
            LL SLW+LF G+K+N+LR RVD+C YD  Q+L+GTL+FT++FF+  T +VYY +FC+V+ + +G Q
Sbjct:  434 LLSSLWRLFLGKKKNLLRNRVDSCEYDVTQMLVGTLLFTIVFFVVATNSVYYLYFCLVRCIVLGIQ 499
[Close]
BLAST of mRNA_S-dermatodea_contig90148.17101.1 vs. uniprot
Match: A0A397C1S4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C1S4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.210e-16
Identity = 36/66 (54.55%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    7 LLGSLWQLFRGRKRNVLRRRVDTCMYDACQLLLGTLVFTVLFFLSPTIAVYYTFFCIVQAVAVGGQ 204
            LL SLW+LF G+K+N+LR RVD+C YD  Q+L+GTL+FT++FF+  T +VYY +FC+V+ + +G Q
Sbjct:  297 LLSSLWRLFLGKKKNLLRNRVDSCEYDVTQMLVGTLLFTIVFFVVATNSVYYLYFCLVRCIVLGIQ 362
[Close]
BLAST of mRNA_S-dermatodea_contig90148.17101.1 vs. uniprot
Match: A0A418F0M2_9STRA (PDDEXK_1 domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F0M2_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.230e-16
Identity = 36/66 (54.55%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    7 LLGSLWQLFRGRKRNVLRRRVDTCMYDACQLLLGTLVFTVLFFLSPTIAVYYTFFCIVQAVAVGGQ 204
            LL SLW+LF G+K+N+LR RVD+C YD  Q+L+GTL+FT++FF+  T +VYY +FC+V+ + +G Q
Sbjct:  219 LLSSLWRLFLGKKKNLLRNRVDSCEYDVTQMLVGTLLFTIVFFVVATNSVYYLYFCLVRCIVLGIQ 284
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig90148.17101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHV3_ECTSI5.300e-3494.20Phosphatidylinositol glycan anchor biosynthesis, c... [more]
A0A6H5K7D0_9PHAE2.360e-3394.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1CDH3_9STRA8.150e-1867.74Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
W4HAQ0_9STRA1.210e-1655.22Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A8C4R5D0_EPTBU1.250e-1659.09Phosphatidylinositol glycan anchor biosynthesis, c... [more]
A0A397BLX3_9STRA3.130e-1654.55Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A418CBU4_9STRA3.180e-1654.55Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4H8F6_9STRA3.200e-1654.55Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397C1S4_9STRA3.210e-1654.55Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A418F0M2_9STRA3.230e-1654.55PDDEXK_1 domain-containing protein n=5 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig90148contigS-dermatodea_contig90148:210..416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue2.4e-27
Seed eggNOG ortholog2880.D7FHV3
Preferred namePIGQ
KEGG koko:K03860,ko:K15102
KEGG TC2.A.29.4
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,map00563,map01100
GOsGO:0000506,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005975,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016254,GO:0016740,GO:0016757,GO:0016758,GO:0017176,GO:0019538,GO:0019637,GO:0031224,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0071704,GO:0090407,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1903509,GO:1990234
EggNOG free text desc.phosphatidylinositol N-acetylglucosaminyltransferase activity
EggNOG OGsKOG1183@1,KOG1183@2759
Ec32 ortholog descriptionN-acetylglucosaminyl transferase component
Ec32 orthologEc-00_000550.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04147
Hectar predicted targeting categorysignal anchor
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925380.2770388-CDS-S-dermatodea_contig90148:209..4161622925380.2770388-CDS-S-dermatodea_contig90148:209..416Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90148 210..416 +
1694079894.3673408-CDS-S-dermatodea_contig90148:209..4161694079894.3673408-CDS-S-dermatodea_contig90148:209..416Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90148 210..416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig90148.17101.1prot_S-dermatodea_contig90148.17101.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig90148 210..416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig90148.17101.1

>prot_S-dermatodea_contig90148.17101.1 ID=prot_S-dermatodea_contig90148.17101.1|Name=mRNA_S-dermatodea_contig90148.17101.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=69bp
SSLLGSLWQLFRGRKRNVLRRRVDTCMYDACQLLLGTLVFTVLFFLSPTI
AVYYTFFCIVQAVAVGGQV
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mRNA from alignment at S-dermatodea_contig90148:210..416+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig90148.17101.1 ID=mRNA_S-dermatodea_contig90148.17101.1|Name=mRNA_S-dermatodea_contig90148.17101.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at S-dermatodea_contig90148:210..416+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTTCACTGCTAGGGTCCCTGTGGCAGCTGTTCCGAGGCCGGAAACGCAA
CGTCCTGCGGCGCCGCGTTGACACGTGCATGTACGACGCCTGCCAGCTCC
TCCTCGGCACCCTGGTCTTTACCGTCCTCTTCTTCCTGTCGCCCACGATA
GCGGTCTACTACACGTTCTTCTGCATCGTGCAGGCGGTTGCTGTGGGGGG
ACAGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig90148:210..416+

>mRNA_S-dermatodea_contig90148.17101.1 ID=mRNA_S-dermatodea_contig90148.17101.1|Name=mRNA_S-dermatodea_contig90148.17101.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at S-dermatodea_contig90148:210..416+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTTCACTGCTAGGGTCCCTGTGGCAGCTGTTCCGAGGCCGGAAACGCAA
CGTCCTGCGGCGCCGCGTTGACACGTGCATGTACGACGCCTGCCAGCTCC
TCCTCGGCACCCTGGTCTTTACCGTCCTCTTCTTCCTGTCGCCCACGATA
GCGGTCTACTACACGTTCTTCTGCATCGTGCAGGCGGTTGCTGTGGGGGG
ACAGGTGAGTTCACTGCTAGGGTCCCTGTGGCAGCTGTTCCGAGGCCGGA
AACGCAACGTCCTGCGGCGCCGCGTTGACACGTGCATGTACGACGCCTGC
CAGCTCCTCCTCGGCACCCTGGTCTTTACCGTCCTCTTCTTCCTGTCGCC
CACGATAGCGGTCTACTACACGTTCTTCTGCATCGTGCAGGCGGTTGCTG
TGGGGGGACAGGTG
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