mRNA_S-dermatodea_contig9006.17097.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9006.17097.1
Unique NamemRNA_S-dermatodea_contig9006.17097.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9006.17097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9006contigS-dermatodea_contig9006:386..904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size519
Cds size300
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925380.0018976-UTR-S-dermatodea_contig9006:385..6041622925380.0018976-UTR-S-dermatodea_contig9006:385..604Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9006 386..604 +
1694079894.2091734-UTR-S-dermatodea_contig9006:385..6041694079894.2091734-UTR-S-dermatodea_contig9006:385..604Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9006 386..604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925380.0122802-CDS-S-dermatodea_contig9006:604..9041622925380.0122802-CDS-S-dermatodea_contig9006:604..904Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9006 605..904 +
1694079894.2206602-CDS-S-dermatodea_contig9006:604..9041694079894.2206602-CDS-S-dermatodea_contig9006:604..904Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9006 605..904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9006.17097.1prot_S-dermatodea_contig9006.17097.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9006 605..904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9006.17097.1

>prot_S-dermatodea_contig9006.17097.1 ID=prot_S-dermatodea_contig9006.17097.1|Name=mRNA_S-dermatodea_contig9006.17097.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=100bp
MDARNHRNLTIATVLPNGTKHDAPPRNAEAVQNAVSMAMRNISSLLSWRT
WRRPSAASARTSASNWRHSSLPFPWVASRTAFILSMSVWKCFSISARSL*
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mRNA from alignment at S-dermatodea_contig9006:386..904+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9006.17097.1 ID=mRNA_S-dermatodea_contig9006.17097.1|Name=mRNA_S-dermatodea_contig9006.17097.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=519bp|location=Sequence derived from alignment at S-dermatodea_contig9006:386..904+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGTGATAAAAAAAAAACAAAAAACGTGACACGAACAAGCAAAACAAAAA
GGAAAAAGCCTTTACCGTACTAGATAAGGTGTCCGCTAAAAGACCCGGTG
TCGCGTTTGCTGCCTTTTTAGCCACATGACGCGAGGTGTAACAACCCAGT
TTGTGTCCGTGATGTTCACATCCACCCCCGCCTTAACCTGACCGCGCAAA
GCACGAACGTATCACGGCAATGGATGCACGGAATCATAGGAATCTCACCA
TAGCGACGGTGTTACCCAACGGGACAAAACACGACGCCCCCCCCCGAAAC
GCGGAAGCTGTTCAAAACGCAGTCAGTATGGCCATGCGCAATATCTCCTC
GCTCCTGAGCTGGAGAACATGGCGGCGGCCCTCTGCCGCTTCGGCCCGGA
CCTCTGCCAGCAATTGGCGCCACTCCTCCCTTCCTTTTCCCTGGGTGGCT
TCGCGAACAGCCTTCATCTTGTCGATGTCCGTGTGGAAGTGCTTCTCGAT
TTCCGCGCGATCACTGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9006:386..904+

>mRNA_S-dermatodea_contig9006.17097.1 ID=mRNA_S-dermatodea_contig9006.17097.1|Name=mRNA_S-dermatodea_contig9006.17097.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at S-dermatodea_contig9006:386..904+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATGCACGGAATCATAGGAATCTCACCATAGCGACGGTGTTACCCAA
CGGGACAAAACACGACGCCCCCCCCCGAAACGCGGAAGCTGTTCAAAACG
CAGTCAGTATGGCCATGCGCAATATCTCCTCGCTCCTGAGCTGGAGAACA
TGGCGGCGGCCCTCTGCCGCTTCGGCCCGGACCTCTGCCAGCAATTGGCG
CCACTCCTCCCTTCCTTTTCCCTGGGTGGCTTCGCGAACAGCCTTCATCT
TGTCGATGTCCGTGTGGAAGTGCTTCTCGATTTCCGCGCGATCACTGTAG
ATGGATGCACGGAATCATAGGAATCTCACCATAGCGACGGTGTTACCCAA
CGGGACAAAACACGACGCCCCCCCCCGAAACGCGGAAGCTGTTCAAAACG
CAGTCAGTATGGCCATGCGCAATATCTCCTCGCTCCTGAGCTGGAGAACA
TGGCGGCGGCCCTCTGCCGCTTCGGCCCGGACCTCTGCCAGCAATTGGCG
CCACTCCTCCCTTCCTTTTCCCTGGGTGGCTTCGCGAACAGCCTTCATCT
TGTCGATGTCCGTGTGGAAGTGCTTCTCGATTTCCGCGCGATCACTGTAG
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