mRNA_S-dermatodea_contig9003.17095.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9003.17095.1
Unique NamemRNA_S-dermatodea_contig9003.17095.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9003.17095.1 vs. uniprot
Match: D7FRE2_ECTSI (Checkpoint protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE2_ECTSI)

HSP 1 Score: 395 bits (1014), Expect = 2.730e-134
Identity = 198/224 (88.39%), Postives = 214/224 (95.54%), Query Frame = 1
Query:    1 LMQDMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEIDVVHDIPVKVMPANESSFFRPPEVHMPQVQLELPRQRSLRTVIDRMKGIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEQTCRKNMSSVKVDVKKLAAVLSMYSLRFETAICCIIGGYSLVLHVILSPVGIGNLTYYVPVMDAGDDLA 672
            L+QDMLFHEYRIESRAGN ILFEANASLLLQALNSG+T+PTCQIKLAKRAGQPCLS+ETRALEI+VVHDIPVKVMPANE+ ++ PP+VH PQVQLELPRQRSLRTV+DRMK IDKFL+VDADMGGQLVF RVEKADATIKTFY+NLTPRFE MD  TCRKNMSSVKVDVKKLAAV+SMY+LRF+TAICCIIGGYSLVLHVILSP+ IGNLTYYVPVMDAGDDLA
Sbjct:   56 LIQDMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSIETRALEIEVVHDIPVKVMPANEAEYYLPPKVHSPQVQLELPRQRSLRTVVDRMKAIDKFLFVDADMGGQLVF-RVEKADATIKTFYSNLTPRFEEMDANTCRKNMSSVKVDVKKLAAVMSMYALRFDTAICCIIGGYSLVLHVILSPINIGNLTYYVPVMDAGDDLA 278          
BLAST of mRNA_S-dermatodea_contig9003.17095.1 vs. uniprot
Match: A0A7S2SUZ2_9STRA (Checkpoint protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUZ2_9STRA)

HSP 1 Score: 235 bits (600), Expect = 5.880e-71
Identity = 121/222 (54.50%), Postives = 159/222 (71.62%), Query Frame = 1
Query:    1 LMQDMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEIDVVHDIPVKVMPANESSFFRPPEVHMPQVQLELPRQRSLRTVIDRMKGIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEQTCRKNMSSVKVDVKKLAAVLSMYSLRFETAICCIIGGYSLVLHVILSPVGIGNLTYYVPVMDAGDD 666
            L Q  LFH++RIES++GN IL +     LL AL+S R AP CQ+KL KR GQ  L +ETRALE+DV+HDIPV VM A+E  ++ PP+V  PQVQLELP  R+L+TVIDR+K I +++Y+  +M G L   R E     I+T+++NL PR +++DE  C +N  +VKVD KKLA VLS YSLRF++ I C+I GYSLV+HVILSP   G LT+Y+PVM   D+
Sbjct:  101 LEQKELFHDWRIESQSGNCILLQLTLQNLLDALHSARNAPQCQLKLTKRNGQAALCLETRALEVDVIHDIPVTVMRASEYQYYCPPDVPQPQVQLELPMSRNLKTVIDRLKNISRYIYLHGEMTGALTL-RAETDSLVIQTYFSNLRPRLDSLDES-CEENRGTVKVDTKKLATVLSSYSLRFDSIIMCLIEGYSLVVHVILSPSNCGTLTFYLPVMSINDE 320          
BLAST of mRNA_S-dermatodea_contig9003.17095.1 vs. uniprot
Match: A0A7S1TZY9_9STRA (Checkpoint protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZY9_9STRA)

HSP 1 Score: 222 bits (565), Expect = 2.220e-66
Identity = 114/217 (52.53%), Postives = 150/217 (69.12%), Query Frame = 1
Query:    1 LMQDMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEIDVVHDIPVKVMPANESSFFRPPEVHMPQVQLELPRQRSLRTVIDRMKGIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEQTCR-KNMSSVKVDVKKLAAVLSMYSLRFETAICCIIGGYSLVLHVILSPVGIGNLTYYVPV 648
            L  D LF EYRIES++ + IL EA  + L +A  SGR AP C +KL KR GQPCL +ETRALE+DV HDIPVKV+ A E   + PPEV  P VQLELP  R LRTV+DR+K  D+++ +D DM G L   R +  +A+IKTF+ NL+PRF+  D++     N+++V+VD +KLA VL+ Y +  E AI C + G S VLHV L+P G+G +TYY+PV
Sbjct:   60 LAADKLFAEYRIESQSDDCILLEAGLANLARAFRSGRAAPLCLLKLTKRRGQPCLCLETRALEVDVTHDIPVKVLKAAEIEAYAPPEVPAPSVQLELPASRQLRTVVDRLKPFDRYVSLDGDMHGSLTL-RAQSGEASIKTFFPNLSPRFDGFDDEAAAANNVATVRVDGRKLANVLAFYGVPCEAAIACFVEGVSFVLHVFLAPAGVGTVTYYLPV 275          
BLAST of mRNA_S-dermatodea_contig9003.17095.1 vs. uniprot
Match: A0A7R9U1B3_9STRA (Checkpoint protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1B3_9STRA)

HSP 1 Score: 212 bits (539), Expect = 8.330e-64
Identity = 101/182 (55.49%), Postives = 133/182 (73.08%), Query Frame = 1
Query:  103 SGRTAPTCQIKLAKRAGQPCLSVETRALEIDVVHDIPVKVMPANESSFFRPPEVHMPQVQLELPRQRSLRTVIDRMKGIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEQTCRKNMSSVKVDVKKLAAVLSMYSLRFETAICCIIGGYSLVLHVILSPVGIGNLTYYVPV 648
            SGRTAP CQ+KL KR GQPCL +ETRALE+DV HDIPVKV+ A+E   + PPEV  P VQLEL + R LRT++DR+K  DK+LY+D+ M G +   RV+  + T+KTF+ NLTPRF+ MDE     N  +V+VD KKLA+VL+ Y+L  E AI C + GY+ ++HV L+P  +G LTYY+P+
Sbjct:    2 SGRTAPLCQLKLTKRGGQPCLCLETRALEVDVTHDIPVKVLKASEIEAYAPPEVPSPTVQLELMQSRQLRTIVDRLKVFDKYLYIDSSMAGNMTL-RVQSGEVTVKTFFPNLTPRFDGMDEDAAIDNEVTVRVDGKKLASVLAFYALSCECAIACFVEGYTFIIHVFLAPRSVGTLTYYLPI 182          
BLAST of mRNA_S-dermatodea_contig9003.17095.1 vs. uniprot
Match: A0A7S3YAY1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAY1_HETAK)

HSP 1 Score: 182 bits (462), Expect = 5.950e-52
Identity = 92/156 (58.97%), Postives = 117/156 (75.00%), Query Frame = 1
Query:    1 LMQDMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEIDVVHDIPVKVMPANESSFFRPPEVHMPQVQLELPRQRSLRTVIDRMKGIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEQ 468
            + Q+ LF +YRIES + N IL E   + L +AL SGR AP CQ+KLAKR G+PCL+VETRALE+D+ HD+PVK++   +  F   PEV  PQVQLELPR RS RTVIDR+KGI++ +Y+DADM G + F RV+  +A IKTFY+NLTPRFE  DE+
Sbjct:   56 ISQERLFTDYRIESLSNNCILLEVGTANLGRALASGRRAPACQLKLAKRGGRPCLAVETRALEVDIAHDLPVKLLRPGDVRFHLAPEVPRPQVQLELPRGRSFRTVIDRVKGINQHVYIDADMSGTITF-RVQTDNAVIKTFYSNLTPRFETGDEE 210          
BLAST of mRNA_S-dermatodea_contig9003.17095.1 vs. uniprot
Match: A0A4D9CSQ4_9STRA (Checkpoint protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSQ4_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.110e-50
Identity = 99/225 (44.00%), Postives = 150/225 (66.67%), Query Frame = 1
Query:    1 LMQDMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEIDVVHDIPVKVMPANESSFFRPPEVHMPQVQLELPRQRSLRTVIDRMKGIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRF-EAM---DEQTCRKNMS-----SVKVDVKKLAAVLSMYSLRFETAICCIIGGYSLVLHVILSPVGIGNLTYYVPV 648
            + Q+ +F EYRI S A N ILFE   S L++A +S +TA   +IKLAKRAGQPC+ +E RAL+++++H++P++VM A +  ++ PP+V MP+VQLELP  RS+RTV++R K +D+F +VD DM G L   R++     ++TFY+NL PR+ E M   DE   R         S+K+D +K  + L   ++++++AICC+I    LVLHV L+   +G LT Y+P+
Sbjct:   56 IQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRIKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLERFKIMDRFCFVDGDMSGALRL-RLQNDRCHVQTFYSNLIPRYVEGMTDGDEDMRRTEEGGSACCSIKLDSRKFLSALHFMTMKYDSAICCMIEESCLVLHVTLAG-HVGTLTLYLPM 278          
BLAST of mRNA_S-dermatodea_contig9003.17095.1 vs. uniprot
Match: A0A836CCR8_9STRA (Checkpoint protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCR8_9STRA)

HSP 1 Score: 150 bits (378), Expect = 5.740e-39
Identity = 95/195 (48.72%), Postives = 126/195 (64.62%), Query Frame = 1
Query:  130 IKLAKRAGQ-PCLSVETR--ALEIDVVHDIPVK-----VMPANESSFFRPPEVHMPQVQLELPRQRSLRTVIDRMKG-----------IDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDE--QTCRKNMSSVKVDVKKLAAVLSMYSLRFETAICCIIGGYSLVLHVILSPVGIGNLTYYVPVM 651
            +KLAKRAG  P L VE+    +E++V  DIPVK     +M A E+ +++ P V + QVQLE+P QRS+R V+DRMKG           IDK+LY+DA+M GQLV  R+E   ATIKTF+T L+PR+E M+   Q  R N +++KVD KKLA VL +Y + FE AI C +   SL+ HV L+   IG  T+Y PVM
Sbjct:   68 MKLAKRAGGVPHLVVESHMSTMEMNVAQDIPVKASGRFLMNAEEADYYKAPVVPVSQVQLEMPVQRSMRAVVDRMKGKCSPPGKRCRCIDKYLYLDANMRGQLVV-RLETDSATIKTFFTQLSPRYEGMERGPQHNRDNKATLKVDAKKLATVLQVYGMSFEGAILCFVENVSLITHVFLAA-SIGTATFYQPVM 260          
BLAST of mRNA_S-dermatodea_contig9003.17095.1 vs. uniprot
Match: A0A7S4HHB1_9STRA (Checkpoint protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HHB1_9STRA)

HSP 1 Score: 133 bits (334), Expect = 9.960e-32
Identity = 92/253 (36.36%), Postives = 133/253 (52.57%), Query Frame = 1
Query:   16 LFHEYRIESRAGNEILFE---ANASLLLQALNSGR----------------------------TAPTCQI-KLAKR-AGQPCLSVETRAL--EIDVVHDIPVKVMPANESSFFRPPEVHMPQVQLELPRQRSLRTVIDRMKGIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAM---DEQTCRKNMSSVKVDVKKLAAVLSMYSLR-----FETAICCIIGGYSLVLHVILSPVGIGNLTYYVP 645
            +F E+RIES A N I+FE   A   L LQ++ SG                              AP+  + KLAKR  G PCL +++      +++ H IPV++M A E  +  PP + MP VQLELP +R L+TV++R++ I   +Y++  M G+L+  R+E   A+I+TFY  L PRFE +   D+ +       +KVD KK+ A L            E A+ C++    LVLH +L+P GIG  TYYVP
Sbjct:   93 IFLEHRIESAADNVIVFEIELAQLKLALQSVLSGGGSIRKRSAIQALHNSSVEGSTEKVMGSLAAPSAIVMKLAKRNGGLPCLCLDSACAGGSVEIHHAIPVRIMRAAEMQYHLPPRIAMPDVQLELPPERPLKTVVERLRSISPHIYIEGSMAGELIL-RIEGDGASIRTFYNKLIPRFEDLKTRDDDSTEPARCILKVDSKKMNACLHWQGTMALGRAVEKAVLCMVENEMLVLHCMLNPGGIGFFTYYVP 344          
BLAST of mRNA_S-dermatodea_contig9003.17095.1 vs. uniprot
Match: A0A6G0XB13_9STRA (Checkpoint protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XB13_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.180e-31
Identity = 76/215 (35.35%), Postives = 125/215 (58.14%), Query Frame = 1
Query:   16 LFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEIDVVHDIPVKVMPANESSFFRPPEVHMPQVQLELPRQRSLRTVIDRMKGIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEQTCRKNM---SSVKVDVKKLAAVLSMYSLRFETAICCIIGGYSLVLHVILSPVGIGNLTYYVPVM 651
            LF +  IESRA N I F    +   +AL SG+ A    ++L KR G+  LS+  + +++D++ +IP++V+    +  +R P V  P V LE+P  RSLRT+ DR+K + K++ + A M G L   RVE     ++T YTNL  R + +D++    ++   S+V+VD K ++ +LS+      + +CC++   +LV+H IL     G+ T YVPV+
Sbjct:   41 LFSDVVIESRANNHIAFALGIANFSRALQSGKEASGVLLRLLKREGRSFLSLRAKTVDLDIIQNIPIEVVSMTTAENYREPNVPPPTVALEMPSLRSLRTITDRLKVMQKYILLQAGMDGTLRL-RVESDAFALQTLYTNLRSRADLVDDENEDMDIPPTSTVRVDAKHISKMLSVDGNAVMSVLCCLVDTQALVMHAILME-QFGSFTCYVPVV 253          
BLAST of mRNA_S-dermatodea_contig9003.17095.1 vs. uniprot
Match: A0A8K1FIE9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FIE9_PYTOL)

HSP 1 Score: 125 bits (315), Expect = 1.140e-29
Identity = 76/221 (34.39%), Postives = 121/221 (54.75%), Query Frame = 1
Query:    1 LMQDMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEIDVVHDIPVKVMPANESSFFRPPEVHMPQVQLELPRQRSLRTVIDRMKGIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEQTCRKNMS----SVKVDVKKLAAVLSMYSLRFETAICCIIGGYSLVLHVILSPVGIGNLTYYVPVM 651
            L    LFHE  ++SRA + I F  +     QAL SGR A    ++L KR G   L + TRA++ID+V  IP++V+  +    +R P V  PQ+ +E+P  +++RT++DR+K + K + ++A   G L   R+E    T++T + +L  R + +D+    +  S    SV VD K L+  +       +T +CCI    + VLH IL   G G+ T Y+PV+
Sbjct:   61 LQNARLFHEVSVQSRADDHIGFLCDIRHFHQALQSGRDASAVMLRLLKRDGASFLCLRTRAVDIDIVQSIPIQVLAMSTVEHYREPNVPAPQIAIEMPPLKNVRTIVDRLKAMHKSITIEASKKGTLAL-RIETHPLTLQTLFAHLRYREDLIDDDEPSEGDSASSCSVTVDAKVLSKAILADGSTTDTVLCCITENRAFVLHSILVD-GFGSFTCYLPVL 279          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9003.17095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRE2_ECTSI2.730e-13488.39Checkpoint protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S2SUZ2_9STRA5.880e-7154.50Checkpoint protein n=1 Tax=Rhizochromulina marina ... [more]
A0A7S1TZY9_9STRA2.220e-6652.53Checkpoint protein n=2 Tax=Phaeomonas parva TaxID=... [more]
A0A7R9U1B3_9STRA8.330e-6455.49Checkpoint protein n=1 Tax=Pinguiococcus pyrenoido... [more]
A0A7S3YAY1_HETAK5.950e-5258.97Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9CSQ4_9STRA2.110e-5044.00Checkpoint protein n=1 Tax=Nannochloropsis salina ... [more]
A0A836CCR8_9STRA5.740e-3948.72Checkpoint protein n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S4HHB1_9STRA9.960e-3236.36Checkpoint protein n=1 Tax=Odontella aurita TaxID=... [more]
A0A6G0XB13_9STRA4.180e-3135.35Checkpoint protein n=1 Tax=Aphanomyces euteiches T... [more]
A0A8K1FIE9_PYTOL1.140e-2934.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9003contigS-dermatodea_contig9003:240..6722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score396.7
Seed ortholog evalue7.2e-108
Seed eggNOG ortholog2880.D7FRE2
Preferred nameHUS1
KEGG koko:K02870,ko:K10903,ko:K10996
KEGG Pathwayko03010,ko04218,map03010,map04218
KEGG ModuleM00177
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000723,GO:0000724,GO:0000725,GO:0000785,GO:0000792,GO:0000793,GO:0000794,GO:0001932,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0007049,GO:0007093,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007338,GO:0007346,GO:0008150,GO:0008152,GO:0008156,GO:0009314,GO:0009411,GO:0009416,GO:0009566,GO:0009628,GO:0009653,GO:0009790,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010212,GO:0010389,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0010972,GO:0016043,GO:0016310,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022402,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030717,GO:0030720,GO:0030896,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0033313,GO:0033314,GO:0033554,GO:0034641,GO:0035038,GO:0035861,GO:0036211,GO:0040020,GO:0042325,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0044778,GO:0044818,GO:0045786,GO:0045835,GO:0045930,GO:0045934,GO:0046483,GO:0048468,GO:0048477,GO:0048519,GO:0048523,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051246,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051674,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0060255,GO:0061982,GO:0061988,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070193,GO:0070194,GO:0070925,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090734,GO:0104004,GO:1901360,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421,GO:2000112,GO:2000113,GO:2000241,GO:2000242
EggNOG free text desc.meiotic DNA integrity checkpoint
EggNOG OGsKOG3999@1,KOG3999@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03400
Hectar predicted targeting categoryother localisation
Exons7
Model size1223
Cds size693
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925379.868-UTR-S-dermatodea_contig9003:239..2421622925379.868-UTR-S-dermatodea_contig9003:239..242Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9003 240..242 +
1694079894.0811749-UTR-S-dermatodea_contig9003:239..2421694079894.0811749-UTR-S-dermatodea_contig9003:239..242Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9003 240..242 +
1622925379.9671943-UTR-S-dermatodea_contig9003:6195..67221622925379.9671943-UTR-S-dermatodea_contig9003:6195..6722Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9003 6196..6722 +
1694079894.2001445-UTR-S-dermatodea_contig9003:6195..67221694079894.2001445-UTR-S-dermatodea_contig9003:6195..6722Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9003 6196..6722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925379.8782804-CDS-S-dermatodea_contig9003:242..4191622925379.8782804-CDS-S-dermatodea_contig9003:242..419Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9003 243..419 +
1694079894.0931084-CDS-S-dermatodea_contig9003:242..4191694079894.0931084-CDS-S-dermatodea_contig9003:242..419Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9003 243..419 +
1622925379.890352-CDS-S-dermatodea_contig9003:1225..13211622925379.890352-CDS-S-dermatodea_contig9003:1225..1321Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9003 1226..1321 +
1694079894.1065567-CDS-S-dermatodea_contig9003:1225..13211694079894.1065567-CDS-S-dermatodea_contig9003:1225..1321Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9003 1226..1321 +
1622925379.9014587-CDS-S-dermatodea_contig9003:2111..22241622925379.9014587-CDS-S-dermatodea_contig9003:2111..2224Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9003 2112..2224 +
1694079894.1266851-CDS-S-dermatodea_contig9003:2111..22241694079894.1266851-CDS-S-dermatodea_contig9003:2111..2224Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9003 2112..2224 +
1622925379.912248-CDS-S-dermatodea_contig9003:2868..29301622925379.912248-CDS-S-dermatodea_contig9003:2868..2930Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9003 2869..2930 +
1694079894.1443083-CDS-S-dermatodea_contig9003:2868..29301694079894.1443083-CDS-S-dermatodea_contig9003:2868..2930Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9003 2869..2930 +
1622925379.9242506-CDS-S-dermatodea_contig9003:4130..41771622925379.9242506-CDS-S-dermatodea_contig9003:4130..4177Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9003 4131..4177 +
1694079894.1556036-CDS-S-dermatodea_contig9003:4130..41771694079894.1556036-CDS-S-dermatodea_contig9003:4130..4177Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9003 4131..4177 +
1622925379.9415808-CDS-S-dermatodea_contig9003:5154..52341622925379.9415808-CDS-S-dermatodea_contig9003:5154..5234Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9003 5155..5234 +
1694079894.1722834-CDS-S-dermatodea_contig9003:5154..52341694079894.1722834-CDS-S-dermatodea_contig9003:5154..5234Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9003 5155..5234 +
1622925379.9543967-CDS-S-dermatodea_contig9003:6077..61951622925379.9543967-CDS-S-dermatodea_contig9003:6077..6195Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9003 6078..6195 +
1694079894.1860478-CDS-S-dermatodea_contig9003:6077..61951694079894.1860478-CDS-S-dermatodea_contig9003:6077..6195Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9003 6078..6195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9003.17095.1prot_S-dermatodea_contig9003.17095.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9003 243..6195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9003.17095.1

>prot_S-dermatodea_contig9003.17095.1 ID=prot_S-dermatodea_contig9003.17095.1|Name=mRNA_S-dermatodea_contig9003.17095.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=231bp
MQDMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAG
QPCLSVETRALEIDVVHDIPVKVMPANESSFFRPPEVHMPQVQLELPRQR
SLRTVIDRMKGIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFE
AMDEQTCRKNMSSVKVDVKKLAAVLSMYSLRFETAICCIIGGYSLVLHVI
LSPVGIGNLTYYVPVMDAGDDLAHGGGGAL*
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mRNA from alignment at S-dermatodea_contig9003:240..6722+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9003.17095.1 ID=mRNA_S-dermatodea_contig9003.17095.1|Name=mRNA_S-dermatodea_contig9003.17095.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6483bp|location=Sequence derived from alignment at S-dermatodea_contig9003:240..6722+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGATGCAGGACATGCTCTTTCACGAATACCGAATCGAGAGCCGAGCAGG TAACGAGATCCTGTTCGAAGCAAACGCGTCCCTGCTCTTGCAGGCGCTGA ACTCCGGCCGAACGGCGCCGACTTGCCAGATCAAGCTGGCAAAGCGGGCT GGCCAGCCGTGCCTCTCCGTTGAGACAAGAGTGAGCATGCGTAAGGGAAG GGAAGGGAAGGGAAGGGGAAGCTGGGGGCGGGGGGGCGGGGGGCGGGGGC GGGGGGGGACGGGGGCTTGTTTTGAGAGCGCTAGATTATGCGTGTGTTGT AGTGCCACACTTTCACCCAGGGAGGAATTTTTCCACAATGACCCCGTAGC ATCATACGTAACGTATTACCTCCATTGAATTACTGTAGTTTGCTTGGGCC ATCTTTCCTCTCTGGGATTCAGTTGGAACCCCAAACGGTCGCTTCGTGTT TTATATTTATTTCTTGTTTCGAGGGAAGCGTGTTCTGTTTTAGTAGCATT CTTCTGCCGGTCCGGCTATGGCCGGTTTTGTATAGGCTCTGCTCTGCAGA TGGCTTTTGTTGCTGCAGTATTTTCATGCTGTTCTTTTTGTTCGGCGGAC TTTGGGTTTGCTTGACATCGTTGCTGCCTTCTGCCTTGTCTTTTCCGCGC GGCTTTTGTTTTGTTTTTGTGCTGGTGCGTATCTCTGCAGTTACCGTTAT AGGCAGGCTGGTAAACAACATCGCTGCTCTTGCTGTCCTCCTCACCTTGT CCGTTACACCATACAGCCTCCTCTCGCTGCTGCGATCTCTTCCTCCGCAA CGCCGAACATGTTTTTGAACACTTTGGTATGATAGTGGGTGCGAGACTTT CGAAGCAGGGTACGACAATACTATTACTCACTTCTCCCTCCAGGATTTGT TTTTATCTCAAATATACCCCACGCTCTTGCCGACATACGCGTGCCGCGCG GACACACTGGGAATCGTTCGCACCAATCTTGAAAAGGCCTTGGAGATCGA TGTGGTGCATGACATCCCGGTGAAGGTGATGCCCGCGAACGAATCGTCGT TCTTCCGACCGCCGGAGGTCCACATGCCTCAGGTATGTACGGGTGTCCGA TGCATCTGCACGAGCGTGGTTTTGCGAGGGCTAAAAAGCTGACCCGGGGC CGTCCACTAGGGGGGGGGGGAGAGGGACGCACTCGCCCCGAAGCGGGGCA TTTCACGGATCCACCGCTCTGGAGCTGTTTAGTGCCTCTGTGTGCGTGTG TGGTGTCGACATAGTCAAGAACTTGTTTCAAGCAAGAGAATACTCAGTAT GAGCGAGAGTTGCTATAGGGACGGAGGTGTGTTTCATGTTACCGTCGTAT GGGCTACTTGGGGGTAGATCCGCCTACACCACTCTTGAGTGAGTTGATCT ACCCCGTGTGCTACATCCTGGGACAGCAGGGCTAAAGTTTCCTCTGCTGC CTCTGTTCATTAAGTATCCCTGTCATGTGACGGTCCTCGCCGTCTTTGAG ACCGCCAGCTTTTCTGACATCGCCTCTTTTGGTGCCAAGCTGGATACATA ACGGACGAAGGTGCACTACGGCACGCCCGTCCGCCGCGCGCTGGAGCGAT CGGCTGTAGGGGGCAAGTCGGTCGTTTAGGGAACGTAAAGGCGCCTCGTC CCTCTAGGCCTGCGCACGTGGAGTTACTCTCACGAGAGGACTTGCTGAGA AATATCGGCAGTGATAAACCAAGCGCTCCCCTGACAGTCGGCCGAGTTCA CTCTGCGTGTATCTAAACTTGCCGCATTGAAAATGGAAGCCCCTCCCCCC TCCCCGCTCCTTCTCCTCGCCCCTGCACCGCCGTGGCCGCATTGGGGGGT TGCTTCTTCTTTGTTTTCGAAGGTTCAATTGGAACTGCCGCGCCAGCGCT CCCTGCGCACCGTTATAGACCGGATGAAGGGTATCGACAAATTCCTCTAC GTGGACGCCGACATGGGGGGACAATTAGTATTCAGGTACCTTTCAAGCGG TTATAGCCCGCTTCTTGTGGGGCGGTGGGAGTTCGGCTAGGCGAGGGGGG AGACGAGGGGGAGAGTGGGACGGGGGCGAGCGCGAAATGATCGGACAGGC CGCACCTGAGTGCCTAGAGGCTGACGTGTTGGCCCAGTGTTTCGTGGTCG AATGTGAGAAGGACTGCGAAAGAAAGACCCGCGACTCTTCACTGCTGGCT TTTCCAGTTGTGTGTTGGGCGCTCTGCTTATGTGAACCACGAGGGGGGCT GGCTTCAGCCCGATCGGGGTACAAATGCGACAGTCGATCAATTGCGAATT CCTGGAGGAGCGAAACGACGTCAGTTATGTCGTTCGGTGCGTTGGAAGCG CGGGGCAATGTTGCATCACTTGCCCCCGCCCCCCACCGTATATTCATTAT ATTCGATGCGTTAACCCCCCCCTCCACCCATACACACCATGTGCCTTCTC ATGCTATCAGTGCTCCTTGATCACGCATGCGACACCTGCGCGTCACAGGG ACCCCTCACGTACCCCGCGTCTGTTCTGCGAGACGTTGGCGACCCGACGA TTCCTTTTGTTTGTTTTTTGACCCTCCCAATCCTTTTTTTGTTTTTTTTT TGTTTTAACGTTTGCGTGGCGCGTTTGAGCAGAGTAGAAAAGGCGGATGC AACGATCAAGACGTTCTACACCAACCTTACTCCAAGATTCGGTGAGCGAC AAGACGTTTCATTCAAAATCCGCATACACGACAGCAACGGGCCGTATCGA CAAGCGGCCGGCGTTAATAAATATACTGAACTTTTTTCTACGTTCTGCCG GTCCACGTTTCTAGGACGAGAAGAACCACAGCACGACCGTGTCGGGCTGG AGGGCGGGGAGGGGGGGGGGGTGGGGGTGGACGTATGTTAAACGCATATC GTATCCATACGGAGATAGGGCGCGGGGGTATTTAATCAGTATTGACGCAA GCGCCGCGCCGATGGGGTTGCCGCAAAGGCTGGTGTAAGCTGGTCTTGGA CAATTTCGACGGCCGCCCGCACACGCTTTCCTCAAGAGAAAAAATAGTTC CAAGAAGTACAATACTGCACCCCCCCTAAAAAATAAAGATTTCAGAAACA TAGAGCGCGCATTGGGGTCCCACCTTTTCAAGAGGGAAGATGGTCCAAGC TACACCTATGGAGGCTCACTTGTTACCTACCTGGTATGCTGCTATGGTGT CGTATCATATATGATGTTATATGGTTATGGTATCATACAGGACAGGAGTC TTTGTCCTGAGGTATATCCTGGTGATGTGTTTTTGCTGCGCTTTTATGAG CCAATAATATTAAAAGTTCCTTTCCTACCACATGCCTTTATTGTATCGAT TTCTCTTGATTGAGCCCTTCTGTTGGACTCTCTGGTGAGTTTCACATAGT ACACCCATACTATATACCTTTGTCTGATTGTTGTGGAATGACTGCTCAGT GCAACAACCAGCTCTCCTTTTGCTTGCAGGATCATGTGCTGCAAAGGTAC GCCTCGCACTCGCAGCAGTACTACAATAGTCGATGTCGTGGTATTTGAAT TCGAACCCAGTCGGTGATGATGGTAGTAGACGGAGTAGACGCGAACAACA GCTTACATGATCAACCAAGCAGAAAATAACCCCCCCCCCGGAGTAGGTTT TTTCCGTTACGCGCTGAAACGAAACATTGCGATCTCCGACTGAACCACTT GCACCCCCTGTTGTTGGGTCGGTTGCTGCAACGCCCCGCTCCGAAGGCGA ACTGCAATGCCACCTCTGTTACGTGCAGCCACTTTGCCGTTTTCCGAGTT TCCGATTTTCTGTCTATTTTGTTCTCGCGTTTTTCACGTCGTCGTCCTGT CTGTCTGTCCCTCTTGCGTGCCGCTTTTTTTTTGTTTGCAGAGGCTATGG ACGAGCAAACGTGTCGAAAAAACATGTCCAGTGTCAAGGTGGGAGGTCTC GATGGTAGTAGTGCCGTCTCGTCTTGCGCGTTTGACAGACACGTTGCAAC CTATACGGTAAATCGATGGTGAATTGGCCTTAAGCGTTGCTTGCGGGGGT ACGCCGGAGGCATGGGGGCGGTATTCCTTTTTCCCCATGACAGCCACCCC AGCGACGTACCAGTCGGGTTCACGTCGACCGATCCGTGCGGAATTTTCTT CTGATGTACTCCACGGGAAGCGATCGACGATCGGTCTACTCCGTACCGAT ACCGCAGGAGGTGTATTACTGGCGCTTGGCGCGAAAATGCGCGACACAGC AGGGCCAGTACTGATAAAGTTCATGGGACGGATCTCAATGAGCTCTCATG TGTGGCGATCCCGGAATCCGTTCCATATCCCATGACGCTCCCCTTGTACC ACCGCTACCCTTTCGGCCCCTGTCGATACTTGCAACAAGTGAGGTTTGCC CTGCTAATTACGATATAAAAGTTTGTTGGTGCGCCAGGCAACAAGAGTTG AAAGGCTTAGTGACGCCGTTCTACGTTCCTTTTCTCGAGGTCAGCCCGTG TCGCGCACGAGAGGCGCCAATCCGCGGAAGAGCTAGCCCATCGAGCTGTT CGCGGCCGTGAAGGGCCGGCAAAACGCATCCTTCCTGTGCTGAAACCCAT GTCGGCAACAAAACCGGAACAGCTTACTAGCGCATGTAGAATTGTTGGTT CGGTGAAATCCTCGCCGCCCCTCCCACCAATGCTTGGGTCGACGATGTGA CCCACGTCCGCCCACGCAGCATCGTACAGACTCTCGGCAGTGCGCGAGCT TGGAAATTCATTTCCTTCTCTTCGTGACCGTGTTCGTGGGGGAAAGCTTG GTGCCGGGTGCGCTCGGGCTGAGTAAACATACTCGTCATGGCGAAAACGA GGAATCAGCTTTTTTCGCCCCCCGTTGTTTTTTTGTTTTGCGGGTGGTGA CGGCGGCCACTGCAGGTGGACGTGAAGAAGCTCGCGGCGGTTTTGTCCAT GTACTCCCTCCGCTTCGAGACGGCGATTTGCTGCATCATCGGCGGGTGAG ATGAGACGAGCGCTGCGGTGTTTCTTCTTTACCTGTTATTGATGTTTACA GTGCGCCGGTTTCGTTTTGCTTCAAGTGCCCGGGTGTCCCTGGTGTTCGG CTGCGACGAGGCACAATAGACAGGTGGTGTGGGTGTGAAATTTCTAACGA GGGCCGGAGCTTGGTAGTGTGTGCGGCGGTCTGGATGGTGTTTTGCTCTT TCAAGTCAGGTCTTAAACGCGTGTGCGTTTGTTTGTGTTCTTTCGGCTTC CTGCAGTATGGCTACATTACCGATGCCCGTTTTGTTTTTCCATAGGTCGA CGGTACGGTGTGGATGGACCCTAACAGGCTGCCCATGGCTTCATCTTTTG GTGTGGGCCTTCGTGTTTTTCAGGACACAGCTTGGGCAAGGTTACACGAT GCCGCTGTGGCCCGACGTGGGGCGTGTACCATATTTCTTCCGCTGAAAGT CAGGGTTCGATGTCATCCAACCTCTTTTTTATGCGAAATGTAAATTTCAC TTAATGTTAGACTGATCCTGGGGGTTCCTTCCTTCTTGGCGCACTAAGGT ACATGCACGTACCGGGGATAGATGCGGGTGCCCCCTTGCGAACACTGGCG GAGGGAAACGGACCAGGCTGATCCCCCAGGAGTGAGACAATACAACTAAC AGAAAAATGCGGTCCAGGCCACGTGGGTTAGATACGGTAGCTGCCCTCGA GAACACTTCATCCCGTCTGGCCTTGCAGTAGGAGAGAGAGGAAAAAATGG CAGCAGCACAGAGCGATGATGATGTTGGTACTGACCAACACCCCCCTCTC CTGCCCGTGGCCCTTCGACCAATTCCTTGATGTGTCAGGTACTCATTGGT TCTCCACGTTATCCTCTCCCCCGTAGGAATCGGAAATTTGACGTACTACG TCCCCGTCATGGATGCCGGCGACGACCTTGCGCACGGGGGCGGGGGCGCA TTATGATGACAGCATGGCAGCGCGCGATGGCGCCGTTTTGTACAGTCGAC TAGAAAAGGGCGCCACCATGCGCGTCATAGGTATAAATGAAACCAAGTCT ACGTTTTCGCGATCTGAGAGCGTCCCTGCCAATAAGGCCGAAATACCAGT CAGTGAAGATCCGACGGTCCTTGTCCAATGAAGCGGAGGGTGCATGATCG TTCGTTTCGATACCTGTGTGACCGAATTGCGTGTCGCTTTTTTGTTGTTG TGTGGTTTCAGTCACCTCATTTTTATTCGATATTTTCATCACCGTGCAAG AGGGGAGCGCTTCTGCTTCAACCGCTCGGCGCAACTCCCCACCTTGAGAC CAATGAGACCAACCGGCTTCCGAGGGCAGAAGTGCCCGCTATCAAAACTG TACTGCTGCTACCGTCCTGGGAACCCGTAGCTTTGTTAGTTTCAGCGCCT ATAGGTTTATTCGGGAAAAATACTACTTCGCGGCATCCCCCCCCCCCCTC ACTGTATCACTGAGGTGCATGCGCGAGTTATGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9003:240..6722+

>mRNA_S-dermatodea_contig9003.17095.1 ID=mRNA_S-dermatodea_contig9003.17095.1|Name=mRNA_S-dermatodea_contig9003.17095.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at S-dermatodea_contig9003:240..6722+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGACATGCTCTTTCACGAATACCGAATCGAGAGCCGAGCAGGTAA
CGAGATCCTGTTCGAAGCAAACGCGTCCCTGCTCTTGCAGGCGCTGAACT
CCGGCCGAACGGCGCCGACTTGCCAGATCAAGCTGGCAAAGCGGGCTGGC
CAGCCGTGCCTCTCCGTTGAGACAAGAATGCAGGACATGCTCTTTCACGA
ATACCGAATCGAGAGCCGAGCAGGTAACGAGATCCTGTTCGAAGCAAACG
CGTCCCTGCTCTTGCAGGCGCTGAACTCCGGCCGAACGGCGCCGACTTGC
CAGATCAAGCTGGCAAAGCGGGCTGGCCAGCCGTGCCTCTCCGTTGAGAC
AAGAGCCTTGGAGATCGATGTGGTGCATGACATCCCGGTGAAGGTGATGC
CCGCGAACGAATCGTCGTTCTTCCGACCGCCGGAGGTCCACATGCCTCAG
GCCTTGGAGATCGATGTGGTGCATGACATCCCGGTGAAGGTGATGCCCGC
GAACGAATCGTCGTTCTTCCGACCGCCGGAGGTCCACATGCCTCAGGTTC
AATTGGAACTGCCGCGCCAGCGCTCCCTGCGCACCGTTATAGACCGGATG
AAGGGTATCGACAAATTCCTCTACGTGGACGCCGACATGGGGGGACAATT
AGTATTCAGGTTCAATTGGAACTGCCGCGCCAGCGCTCCCTGCGCACCGT
TATAGACCGGATGAAGGGTATCGACAAATTCCTCTACGTGGACGCCGACA
TGGGGGGACAATTAGTATTCAGCAGAGTAGAAAAGGCGGATGCAACGATC
AAGACGTTCTACACCAACCTTACTCCAAGATTCGCAGAGTAGAAAAGGCG
GATGCAACGATCAAGACGTTCTACACCAACCTTACTCCAAGATTCGAGGC
TATGGACGAGCAAACGTGTCGAAAAAACATGTCCAGTGTCAAGAGGCTAT
GGACGAGCAAACGTGTCGAAAAAACATGTCCAGTGTCAAGGTGGACGTGA
AGAAGCTCGCGGCGGTTTTGTCCATGTACTCCCTCCGCTTCGAGACGGCG
ATTTGCTGCATCATCGGCGGGTGGACGTGAAGAAGCTCGCGGCGGTTTTG
TCCATGTACTCCCTCCGCTTCGAGACGGCGATTTGCTGCATCATCGGCGG
GTACTCATTGGTTCTCCACGTTATCCTCTCCCCCGTAGGAATCGGAAATT
TGACGTACTACGTCCCCGTCATGGATGCCGGCGACGACCTTGCGCACGGG
GGCGGGGGCGCATTATGAGTACTCATTGGTTCTCCACGTTATCCTCTCCC
CCGTAGGAATCGGAAATTTGACGTACTACGTCCCCGTCATGGATGCCGGC
GACGACCTTGCGCACGGGGGCGGGGGCGCATTATGA
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