mRNA_S-dermatodea_contig900.17091.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig900.17091.1
Unique NamemRNA_S-dermatodea_contig900.17091.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig900.17091.1 vs. uniprot
Match: D7G6E1_ECTSI (NFACT-R_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6E1_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 2.800e-113
Identity = 175/218 (80.28%), Postives = 192/218 (88.07%), Query Frame = 2 
Query:   92 MVFYFTTSDDHMLYMGKDKYENEDLIRYGFPEDVWFHVDNLSSAHVYLRMKRGEKLKELDPALLVECCSLVKANSIEGCKKKDVHVVYTRWQNLKKLPSYDAGQVGYRDESRVFKCRVEKSNAIVNALNRTKREEHPDLAALQEERAVEHRREQKALKKKQKLEEKIAQKQKARNEEEKRLRSYDSLFQESKMASNAEAAASEDASASIAYEDDFMVR 745
            MVFYFT+SD HMLYMGKDKYENEDLIRYGFPEDVWFHVDNLSSAHVYLRM RGEKLKELDPALLVECC+LVKANSIEGCK+K+V+VVYTRWQNL+K  SY+AGQVGY+DESRVFKCRVEK+NAIVNALNRTKREEHP+LA LQEERA EHRREQKAL+KK+                   LRSYD+LF+ESKMASNA+ AA+EDASASIA+EDDFMVR
Sbjct:    1 MVFYFTSSDGHMLYMGKDKYENEDLIRYGFPEDVWFHVDNLSSAHVYLRMNRGEKLKELDPALLVECCTLVKANSIEGCKRKEVNVVYTRWQNLEKKASYEAGQVGYKDESRVFKCRVEKTNAIVNALNRTKREEHPNLAELQEERAKEHRREQKALRKKKXX---XXXXXXXXXXXXXXLRSYDTLFEESKMASNADVAATEDASASIAFEDDFMVR 215
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BLAST of mRNA_S-dermatodea_contig900.17091.1 vs. uniprot
Match: A0A835Z4I1_9STRA (NFACT-R_1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I1_9STRA)

HSP 1 Score: 284 bits (727), Expect = 3.440e-94
Identity = 151/219 (68.95%), Postives = 180/219 (82.19%), Query Frame = 2 
Query:   95 VFYFTTSDDHMLYMGKDKYENEDLIRYGFPEDVWFHVDNLSSAHVYLRMKRGEKLKELDPALLVECCSLVKANSIEGCKKKDVHVVYTRWQNLKKLPSYDAGQVGYRDESRVFKCRVEKSNAIVNALNRTKREEHPDLAALQEERAVEHRREQKALKKKQKLEEKIAQKQKARNEEEKRLRSYDSLFQESKMASNAEAA----ASEDASASIAYEDDFM 739
            +++FT S  H LYMGKDKYENEDLIRYG PEDVWFHVDNLSSAHVYLRM +GEKLKE+ P +++ECC LVKANSIEGCKKKDV VVYTRW NL+K  S +AGQVG++DES+V K RVEK+NAIVNALNR+K E  PDL ALQEERA E RREQKA++K+Q+  EKIA++Q    EE+KR+RSYDSLF E KMA +   +    ASED S+++A+EDDFM
Sbjct:    1 MYFFTASSGHTLYMGKDKYENEDLIRYGLPEDVWFHVDNLSSAHVYLRMNKGEKLKEVLPEVIMECCQLVKANSIEGCKKKDVEVVYTRWMNLRKSNSMEAGQVGFKDESKVHKVRVEKNNAIVNALNRSKTEASPDLQALQEERAAEIRREQKAVRKQQEQAEKIARRQ---AEEDKRMRSYDSLFDEGKMAGSTNVSNPYGASEDQSSAVAFEDDFM 216
[Close]
BLAST of mRNA_S-dermatodea_contig900.17091.1 vs. uniprot
Match: A0A6H5KW36_9PHAE (NFACT-R_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW36_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 2.730e-74
Identity = 128/167 (76.65%), Postives = 144/167 (86.23%), Query Frame = 2 
Query:  239 MKRGEKLKELDPALLVECCSLVKANSIEGCKKKDVHVVYTRWQNLKKLPSYDAGQVGYRDESRVFKCRVEKSNAIVNALNRTKREEHPDLAALQEERAVEHRREQKALKKKQKLEEKIAQKQKARNEEEKRLRSYDSLFQESKMASNAEAAASEDASASIAYEDDFM 739
            M RGEKLKELDPALLVECC+LVKANSIEGCK+K+V+VVYTRWQNL+K  SY+AGQVGY+DESRVFKCRVEK+NAIVNALNRTKREEHP+LA LQEERA EHRREQKAL+KK+   E              RLRSYD+LF+ESKMASNA+ AA+EDASASIA+EDDFM
Sbjct:    1 MNRGEKLKELDPALLVECCTLVKANSIEGCKRKEVNVVYTRWQNLEKKASYEAGQVGYKDESRVFKCRVEKTNAIVNALNRTKREEHPNLAELQEERAKEHRREQKALRKKK---EXXXXXXXXXXXXXXRLRSYDTLFEESKMASNADVAATEDASASIAFEDDFM 164
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BLAST of mRNA_S-dermatodea_contig900.17091.1 vs. uniprot
Match: B8C9M3_THAPS (NFACT-R_1 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9M3_THAPS)

HSP 1 Score: 202 bits (513), Expect = 1.160e-61
Identity = 116/224 (51.79%), Postives = 154/224 (68.75%), Query Frame = 2 
Query:   92 MVFYFTTS-DDHMLYMGKDKYENEDLIRYGFPEDVWFHVDNLSSAHVYLRMKRGEKLKELDPALLVECCSLVKANSIEGCKKKDVHVVYTRWQNLKKLPS--YDA-----GQVGYRDESRVFKCRVEKSNAIVNALNRTKREEHPDLAALQEERAVEHRREQKALKKKQKLEEKIAQKQKARNEEEKRLRSYDSLFQESKMASNAEAAASEDASASIAYEDDFM 739
            MV+YFTT   ++ +YMGKDKYENEDLI+YG PED WFHVD+LSSAHVYLR+K G  L ++    L +CC+LVKANSI+GCKK  V+VVYTRW+NLKK  S   D      GQVG+     V +  +EK+N IVN LN+TK E+HP+LA  Q++R  E + E K  +K     +++ + ++AR +EE   RSYD +  E  M SNAE  A+ D++A+  +EDDFM
Sbjct:    1 MVYYFTTRCGNYTIYMGKDKYENEDLIKYGHPEDCWFHVDDLSSAHVYLRLKPGMTLDDIPEDCLTDCCALVKANSIQGCKKSSVYVVYTRWKNLKKASSTCQDTSDMVDGQVGFHRPDNVRRTNIEKNNPIVNQLNKTKEEKHPNLAKQQQDRMKEIQTELKEKRKADDKAKRLEELERARIKEE---RSYDRIMGEHNMTSNAERNATADSTAAEEFEDDFM 221
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BLAST of mRNA_S-dermatodea_contig900.17091.1 vs. uniprot
Match: A0A4D9D3G1_9STRA (NFACT-R_1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3G1_9STRA)

HSP 1 Score: 196 bits (499), Expect = 2.790e-60
Identity = 98/144 (68.06%), Postives = 115/144 (79.86%), Query Frame = 2 
Query:  134 MGKDKYENEDLIRYGFPEDVWFHVDNLSSAHVYLRMKRGEKLKELDPALLVECCSLVKANSIEGCKKKDVHVVYTRWQNLKKLPSYDAGQVGYRDESRVFKCRVEKSNAIVNALNRTKREEHPDLAALQEERAVEHRREQKALK 565
            MGKDKYENE+LIR+G PEDVWFHVD LSSAHVYLR K G+KL ++   LL+EC SLVKANSIEGCK K+V VVYTRW+NLKK  S +AGQ+G+ D S+V   +V+K N+IVNALN+TK E  PDL A QE RAVE+R  QKA K
Sbjct:    1 MGKDKYENEELIRFGLPEDVWFHVDELSSAHVYLRQKPGQKLDDISSDLLLECSSLVKANSIEGCKMKEVKVVYTRWRNLKKTKSMEAGQIGFHDPSKVRTIKVQKCNSIVNALNKTKEERFPDLQAEQEARAVEYRAAQKASK 144
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BLAST of mRNA_S-dermatodea_contig900.17091.1 vs. uniprot
Match: A0A2D4BG70_PYTIN (Coiled-coil domain-containing protein 25, variant 2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BG70_PYTIN)

HSP 1 Score: 195 bits (495), Expect = 5.040e-59
Identity = 114/220 (51.82%), Postives = 153/220 (69.55%), Query Frame = 2 
Query:   92 MVFYFTTSDDHMLYMGKDKYENEDLIRYGFPEDVWFHVDNLSSAHVYLRMKRGEK-LKELDPALLVECCSLVKANSIEGCKKKDVHVVYTRWQNLKKLPSYDAGQVGYRDESRVFKCRVEKSNA-IVNALNRTKREEHPDLAALQEERAVEHRREQKALKKKQKLEEKIAQKQKARNE--EEKRLRSYDSLFQESKMASNAEAAASEDASASIAYEDDFM 739
            MVFYFT+S+ H +YMGKDK+ENEDLIRYGF ED+WFHVD+LSSAHVYLR+  G+  L ++    L EC  LVK NSIEGCKKK V V+YT+W+NLKK PS + GQVG+    RV    VE+ N  I+ ALN++K E +PDL   + +R + ++ E+K  K++Q++E    Q++KAR E  ++K LRSY +L     + S  +  AS D S+  AYE+DFM
Sbjct:    1 MVFYFTSSEGHTIYMGKDKFENEDLIRYGFLEDIWFHVDDLSSAHVYLRLPIGKSALDDISETCLEECAQLVKENSIEGCKKKSVKVIYTKWRNLKKTPSMEVGQVGFNHPERVRTYVVEEKNKDILKALNKSKVESYPDLEEERRQRELLYKAERK--KQRQQIE---LQERKAREEFKKQKELRSYSTLLTRDNIESGEKVVASADLSSVNAYEEDFM 215
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BLAST of mRNA_S-dermatodea_contig900.17091.1 vs. uniprot
Match: A0A6U6DJ37_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DJ37_9STRA)

HSP 1 Score: 194 bits (494), Expect = 6.920e-59
Identity = 115/217 (53.00%), Postives = 144/217 (66.36%), Query Frame = 2 
Query:   92 MVFYFTTS-DDHMLYMGKDKYENEDLIRYGFPEDVWFHVDNLSSAHVYLRMKRGEKLKELDPALLVECCSLVKANSIEGCKKKDVHVVYTRWQNLKKLPSYDAGQVGYRDESRVFKCRVEKSNAIVNALNRTKREEHPDLAALQEERAVEHRREQKALKKKQKLEEKIAQKQKARNEEEKRLRSYDSLFQESKMASNAEAAASEDASASIAYEDDFM 739
            MVFYF+T   + MLYMGKDKYENEDLI++G PEDVWFHVD+LSSAHVYLRMK G  L ++ P  ++EC +LVKANSI+GCK K V+VVYTRW+NLKK      GQVG+     V +  VEK N IVNALN+TK E HPDL   Q++R  E + E+KA                   +E  RL SY+ + ++  M SNAE  A+ DA+A+  YE+DF 
Sbjct:    1 MVFYFSTRCGNFMLYMGKDKYENEDLIKFGQPEDVWFHVDDLSSAHVYLRMKPGMTLSDIPPDAILECAALVKANSIQGCKMKSVYVVYTRWKNLKKTSQMVDGQVGFHRPENVKRMEVEKHNPIVNALNKTKEERHPDLYKEQQDRLREIQEEKKANXXXXXXXXXXXXXXXXXXKE--RL-SYNRIMKDDNMTSNAERTATADATAAEEYEEDFF 214
[Close]
BLAST of mRNA_S-dermatodea_contig900.17091.1 vs. uniprot
Match: K0TEU7_THAOC (NFACT-R_1 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEU7_THAOC)

HSP 1 Score: 193 bits (490), Expect = 2.780e-58
Identity = 109/217 (50.23%), Postives = 147/217 (67.74%), Query Frame = 2 
Query:   92 MVFYFTTS-DDHMLYMGKDKYENEDLIRYGFPEDVWFHVDNLSSAHVYLRMKRGEKLKELDPALLVECCSLVKANSIEGCKKKDVHVVYTRWQNLKKLPSYDAGQVGYRDESRVFKCRVEKSNAIVNALNRTKREEHPDLAALQEERAVEHRREQKALKKKQKLEEKIAQKQKARNEEEKRLRSYDSLFQESKMASNAEAAASEDASASIAYEDDFM 739
            MV+YFT+    + +YMGKDK+ENE LI+YG PEDVWFHVD+LSSAHVYLR+K G+ L ++    L++CCSL KANSI+GCKK  V++VYTRW+NLKK      GQVGY   + V + + EK+N +V  L +TK+E  PDLA  Q  R  E +  +KA  + +   +K+      R +EE   RSY+ +F + KM SNA+  A+ D SA++ YEDDFM
Sbjct:    1 MVYYFTSRCGAYTIYMGKDKHENETLIKYGLPEDVWFHVDDLSSAHVYLRLKPGQTLDDIPEEALIDCCSLCKANSIQGCKKSTVYIVYTRWKNLKKTSGMVDGQVGYHRPNNVRRRQTEKNNPVVRQLEKTKKELFPDLAQEQAARMREIQELKKAHMRAEAKAKKLXXXXXXRLKEE---RSYERIFSQDKMTSNADMNATVDDSAAVDYEDDFM 214
[Close]
BLAST of mRNA_S-dermatodea_contig900.17091.1 vs. uniprot
Match: D0N3D3_PHYIT (NFACT-R_1 domain-containing protein n=29 Tax=Phytophthora TaxID=4783 RepID=D0N3D3_PHYIT)

HSP 1 Score: 193 bits (490), Expect = 2.870e-58
Identity = 113/219 (51.60%), Postives = 149/219 (68.04%), Query Frame = 2 
Query:   92 MVFYFTTSDDHMLYMGKDKYENEDLIRYGFPEDVWFHVDNLSSAHVYLRMKRGE-KLKELDPALLVECCSLVKANSIEGCKKKDVHVVYTRWQNLKKLPSYDAGQVGYRDESRVFKCRVEKSNA-IVNALNRTKREEHPDLAALQEERAVEHRREQKALKKKQKLEEKIAQ-KQKARNEEEKRLRSYDSLFQESKMASNAEAAASEDASASIAYEDDFM 739
            MVFYFT+S+ H +YMGKDK+ENEDLIRYGF ED+WFHVD+LSSAHVYLR+  G+ K+ ++    L EC  LVK NSIEG KKK V V YTRW+NLKK PS + GQVG+    RV   +VE+ N  I+ +LN+TK+E HPDL     +R + +    KA +KKQ+L+ +  Q K K   +++K LRSY +L     + S  +  A+ D S+  AYE+DFM
Sbjct:    1 MVFYFTSSEGHTIYMGKDKFENEDLIRYGFMEDIWFHVDDLSSAHVYLRLPLGQTKVDDVSETCLEECAQLVKENSIEGSKKKSVSVCYTRWRNLKKTPSMEIGQVGFNHPERVRHYKVEEKNKDIIKSLNKTKQEFHPDLEEEHRQRELLY----KAERKKQRLQLEAEQRKAKMEFKQQKDLRSYSTLMSRDNIESGDKLDAAADLSSVNAYEEDFM 215
[Close]
BLAST of mRNA_S-dermatodea_contig900.17091.1 vs. uniprot
Match: A0A7S0GIL2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GIL2_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.300e-57
Identity = 94/162 (58.02%), Postives = 119/162 (73.46%), Query Frame = 2 
Query:   86 RTMVFYFT-TSDDHMLYMGKDKYENEDLIRYGFPEDVWFHVDNLSSAHVYLRMKRGEKLKELDPALLVECCSLVKANSIEGCKKKDVHVVYTRWQNLKKLPSYDAGQVGYRDESRVFKCRVEKSNAIVNALNRTKREEHPDLAALQEERAVEHRREQKALKK 568
            R MVF+FT T   + LYMGKDKYENEDLI+YG PEDVWFHVD++SSAHVYLR K GE L ++ P L+++CCSLVKANSI GCK   V+V+YTRW+NLKK      G+V Y  +  V + + EK+  IVN LN+TK E+HPDL  +Q++R  E   E+KA +K
Sbjct:    6 RAMVFFFTSTCGGYTLYMGKDKYENEDLIKYGLPEDVWFHVDDMSSAHVYLRQKTGELLADISPELMLDCCSLVKANSIAGCKLNSVYVIYTRWKNLKKTSRMVEGEVSYHRQQNVKRVKAEKNKPIVNGLNKTKVEDHPDLWQIQKDRECEMIEEKKAARK 167
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig900.17091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6E1_ECTSI2.800e-11380.28NFACT-R_1 domain-containing protein n=1 Tax=Ectoca... [more]
A0A835Z4I1_9STRA3.440e-9468.95NFACT-R_1 domain-containing protein n=1 Tax=Tribon... [more]
A0A6H5KW36_9PHAE2.730e-7476.65NFACT-R_1 domain-containing protein n=1 Tax=Ectoca... [more]
B8C9M3_THAPS1.160e-6151.79NFACT-R_1 domain-containing protein n=1 Tax=Thalas... [more]
A0A4D9D3G1_9STRA2.790e-6068.06NFACT-R_1 domain-containing protein n=1 Tax=Nannoc... [more]
A0A2D4BG70_PYTIN5.040e-5951.82Coiled-coil domain-containing protein 25, variant ... [more]
A0A6U6DJ37_9STRA6.920e-5953.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
K0TEU7_THAOC2.780e-5850.23NFACT-R_1 domain-containing protein n=1 Tax=Thalas... [more]
D0N3D3_PHYIT2.870e-5851.60NFACT-R_1 domain-containing protein n=29 Tax=Phyto... [more]
A0A7S0GIL2_9STRA1.300e-5758.02Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig900contigS-dermatodea_contig900:2057..6639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score333.6
Seed ortholog evalue7.1e-89
Seed eggNOG ortholog2880.D7G6E1
Preferred nameCCDC25
KEGG koko:K04989
KEGG TC1.A.5.1.2
KEGG Pathwayko04742,map04742
GOsGO:0001581,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0007600,GO:0007606,GO:0008150,GO:0008324,GO:0009268,GO:0009581,GO:0009582,GO:0009593,GO:0009605,GO:0009612,GO:0009628,GO:0009987,GO:0010447,GO:0015075,GO:0015085,GO:0015267,GO:0015318,GO:0016020,GO:0016021,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0032501,GO:0032991,GO:0034220,GO:0034702,GO:0034703,GO:0042221,GO:0043235,GO:0044424,GO:0044425,GO:0044464,GO:0046873,GO:0050877,GO:0050896,GO:0050906,GO:0050907,GO:0050909,GO:0050912,GO:0050915,GO:0050982,GO:0051179,GO:0051234,GO:0051606,GO:0051716,GO:0055085,GO:0070588,GO:0070838,GO:0071214,GO:0071467,GO:0071468,GO:0071944,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0104004,GO:1902495,GO:1990351
EggNOG free text desc.Domain of unknown function (DUF814)
EggNOG OGsKOG3272@1,KOG3272@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF814
Ec32 orthologEc-10_001520.1
Exons7
Model size745
Cds size654
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig900.17091.1prot_S-dermatodea_contig900.17091.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig900 2148..6639 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925379.2837682-UTR-S-dermatodea_contig900:2056..21471622925379.2837682-UTR-S-dermatodea_contig900:2056..2147Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig900 2057..2147 +
1694079893.6153774-UTR-S-dermatodea_contig900:2056..21471694079893.6153774-UTR-S-dermatodea_contig900:2056..2147Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig900 2057..2147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925379.2955875-CDS-S-dermatodea_contig900:2147..21721622925379.2955875-CDS-S-dermatodea_contig900:2147..2172Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 2148..2172 +
1694079893.629075-CDS-S-dermatodea_contig900:2147..21721694079893.629075-CDS-S-dermatodea_contig900:2147..2172Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 2148..2172 +
1622925379.3071835-CDS-S-dermatodea_contig900:2668..28081622925379.3071835-CDS-S-dermatodea_contig900:2668..2808Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 2669..2808 +
1694079893.6397376-CDS-S-dermatodea_contig900:2668..28081694079893.6397376-CDS-S-dermatodea_contig900:2668..2808Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 2669..2808 +
1622925379.3196385-CDS-S-dermatodea_contig900:3396..34471622925379.3196385-CDS-S-dermatodea_contig900:3396..3447Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 3397..3447 +
1694079893.6503673-CDS-S-dermatodea_contig900:3396..34471694079893.6503673-CDS-S-dermatodea_contig900:3396..3447Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 3397..3447 +
1622925379.3322303-CDS-S-dermatodea_contig900:3934..40301622925379.3322303-CDS-S-dermatodea_contig900:3934..4030Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 3935..4030 +
1694079893.6615498-CDS-S-dermatodea_contig900:3934..40301694079893.6615498-CDS-S-dermatodea_contig900:3934..4030Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 3935..4030 +
1622925379.3447657-CDS-S-dermatodea_contig900:4661..48041622925379.3447657-CDS-S-dermatodea_contig900:4661..4804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 4662..4804 +
1694079893.674359-CDS-S-dermatodea_contig900:4661..48041694079893.674359-CDS-S-dermatodea_contig900:4661..4804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 4662..4804 +
1622925379.3567169-CDS-S-dermatodea_contig900:5996..60661622925379.3567169-CDS-S-dermatodea_contig900:5996..6066Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 5997..6066 +
1694079893.6924362-CDS-S-dermatodea_contig900:5996..60661694079893.6924362-CDS-S-dermatodea_contig900:5996..6066Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 5997..6066 +
1622925379.367949-CDS-S-dermatodea_contig900:6510..66391622925379.367949-CDS-S-dermatodea_contig900:6510..6639Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 6511..6639 +
1694079893.7042935-CDS-S-dermatodea_contig900:6510..66391694079893.7042935-CDS-S-dermatodea_contig900:6510..6639Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig900 6511..6639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig900.17091.1

>prot_S-dermatodea_contig900.17091.1 ID=prot_S-dermatodea_contig900.17091.1|Name=mRNA_S-dermatodea_contig900.17091.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=218bp
MVFYFTTSDDHMLYMGKDKYENEDLIRYGFPEDVWFHVDNLSSAHVYLRM
KRGEKLKELDPALLVECCSLVKANSIEGCKKKDVHVVYTRWQNLKKLPSY
DAGQVGYRDESRVFKCRVEKSNAIVNALNRTKREEHPDLAALQEERAVEH
RREQKALKKKQKLEEKIAQKQKARNEEEKRLRSYDSLFQESKMASNAEAA
ASEDASASIAYEDDFMVR
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mRNA from alignment at S-dermatodea_contig900:2057..6639+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig900.17091.1 ID=mRNA_S-dermatodea_contig900.17091.1|Name=mRNA_S-dermatodea_contig900.17091.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4583bp|location=Sequence derived from alignment at S-dermatodea_contig900:2057..6639+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCAGCGGCACACGACACACACACACACACAGGACACAGCACAACGATA
GTACCTCGGTGGTGCGTGTAAGGGCCTGAGCTGCGAGGACGATGGTTTTC
TACTTTACTACCAGTGGTGAGAGGAGTTTGGTGTAGTCACCGGTCGTTTT
GGGATTATTATTTTGATTTAGGCAGGTAAAGGTGCGTATAACAGCATTAT
TATTTTAAGTGTAAACCGGGAAAAAGTGGGAAGTGGGCCCGCAACGCCCC
TGCTCTCGCGCAACGTACGCGTCGCTAAGCGTAAGCTGTGACCTCCGCCG
CCTTGATCGTGCAACAGCGCACAGGCCAAGAGACCAGAGGCCGATCTGTC
ATGTCATGATGACTCCTCTGCTATCGAATCGAAATTCGTCGTAGCCGTTG
GTCTGCCCCAAGGCTTATTACTTGTATAAACTCATCGAGCACGAGACGCT
TGTTGTACATTCAAGTCGATTCACGTACAGAATACACAGTATGACAGGGC
ATACTTGTACAATACTGTACACATACTTGTACAATACTGTACCGTGTGAA
GAGTCAAGACCCGCTAAAGTGGTTCAACCATTGTTTATCTCCCCGCCCAC
GCGACGCCACAGACGACCACATGCTCTACATGGGCAAAGACAAATACGAG
AACGAGGACCTGATCAGATACGGCTTCCCCGAAGACGTCTGGTTCCACGT
GGACAACTTGAGCTCCGCGCACGTCTACCTTCGCATGAAACGCGGAGAGA
AGGTGTACTCACATGACAAGTAAATACGTTGCACAAGGCATCGTATGAGT
GTGACAACCTTCCGCCAGTTCGTGGAACTGCGGAAGATAACATTAATAAT
AGCCCTCAGGCCGGGGGTGTGCATCATACTGAGAAGTGGAATGTCAAATG
CAATCATTGACACGTCGAGCAGGATTGGGTGGGTGTGCTATATACCGTTT
CCTAGTCAAGTCGCGCTTTCGCCATGATCAGGCCCGACAGAGTACACATC
GGGTCGGGTCGCCGGTGTAAGTGGTTCTGATTGCGTTTCCATTGCCATGA
TGCTGCTAAGGTTGTACAACAGCAGTAACACAGAGTAACCCAACGAAAGC
ACCACAGCGGAACGCCAACGAACCTAACAACGTACTGCTGTATCATAGCT
CTAGAGGGCCCCTGCTCGTGGTAGCGTTTTTTTGTTGTTGGAAATCGACT
CTTTTCCCGGGCCTTGGAACTCCGCGCGCTTTCTCCGGTCGACTCGAGAA
ACCCATGCACTACAGTAGTACATGGTAGATACTGGGACTTAGAGTCGATT
GTGTCCATGCTGCATGTTGCCTCGTTCGCATGTGTGGCAGCTAAAGGAGC
TGGACCCCGCGCTGCTGGTGGAGTGCTGCTCTCTCGTCAAGGTACGCTCG
TCCAGGGGACGCCGAATGGTGTTATACTCGTCAATGCTTTTACGGTATCA
TATTCGTGCCAGAGTTCTCGTGTAGCTCTATTTATAGTAGGAAAAATTGT
CACTCCTTCTGCAATGTCGCCATTGGTGTCATTGTCGTGCGCTTCCCCGT
GATTGCCCGCGGTCCGTGCGCTTGTCGACAGACAGACGTACCCCTCTATC
CCGTAACGTGCGCCCCCTCGAGTTGCCATTCGTCGCTCTGGTGTGACTTT
ACACGTCAGGAAGAGAATTCCCTGTCGGCGTGTACCTTCAACACAAGGGA
TTCCTCTTAATGGCACGCCGGCTATCCCATGCGAAGCGTACTTGTTAGCG
CCCAGGGTGTGTGTGTTCTGGCGACTCGAACGATGTTTTCGGGATGGGCC
GCTTGAACCACGACGCTAACCCGTTACGTCTGATCAGCGAAACAACAGCT
CTTCCGCTTCCAATGCACACTGCTCCAGGCGAACTCGATCGAGGGATGCA
AGAAAAAGGACGTGCACGTGGTGTACACTCGGTGGCAGAACCTCAAGAAG
TTGCCGAGCTACGATGCGGGGCAGGTGATAAGAACTGTACCGTTTTCTGG
AAGCTCCTTGTCTAAGGAAGTTGTCCATGGGCAGCAAGGAGTGGAGCGAT
GGTGGTCCTGAGAGTCCCGTCGTGCTGCAGTATTCCTGAATCTGAAGGTC
GTGGCACAGCAGAGTGAGCTGCGAGCTATCTTAGCCGCGCTCATCCCCAG
TCGAATCAGATGACGTTGCTTCCGTTGAAAAGGTATTGCTACTCGCAGTG
CAGCCTGCTACAGCCCTCCTCTCTGGTAACGTTAAGACAAGGATATCCCG
ACTAATGAGAGGTTCCCGCACTTGACGCTTTGAGCCTTTTCTCGGAATTT
CAAGAGAAGAGCCACCGCAAAGCGAGTCTTACGACTGTCTTCGATTGGTT
TGATTGATTGATTGGCACCCTTGTAGCCGATCGGCTTAAGCCGACCCGAC
TTGGGTCAGATGCGCAAAGAGTCGAGCAGAAAGTACCTAATCAGAAATCT
ACTTGTTACAAATACAGCAATACCGTCCCGTAGGAAAAATTATTTCCTCA
CATACGCGTGCTTGTGCCCACTGTATCGGCGCCCGTTGCTGTCGTCGCGA
ACGGCTGCCGTTCTTTCGCTACTGCGCTCTTTCGCTACTGCTCTCTTTTC
ATCAGGTGGGGTACAGGGACGAAAGCCGAGTGTTCAAGTGTCGCGTGGAG
AAGAGCAACGCGATCGTGAACGCTTTGAATCGCACCAAGCGCGAGGAGCA
TCCCGATCTCGCGGCACTGCAGGAGGAACGGGCAGTTGAACACAGAAGGT
GCACGATTTCTTGCGACAAGGCTTCTTGCTCATGAAACCTCTCTTTTGTC
GCCGAGTGTCGATTGTCGATGCTACCATATACGTGCACACAAAAACAGCG
GTTTAACGATTGCGGTTGTTTTCTGTCTGTATCGTTTTATTGAAGGTCTA
GGAAAAAATGTTGTTTTTGCACACTTGGTTGTTTCGCAATAGCCTCGCCT
TTGCTCATGTGGTCACCGGTCGCGCGGCCGGTTGCTTGGTCCTCGCCGGC
CTAGCGTCGGATTCCCACTTCTGGACCCGAAAGAGTCGACACTGACGGGG
AATTGGGGATTGGAGACTGGCGCGTGTCACGAAACTGCGCCCGGTGTATC
CCTGTGTGTGATATTGAGTGGCTAAAGTTGAGTGCGTCAAATCGATAAAA
CGCGAGAGTTTACAACAAACAAAACCTAGTTAACATGTGAATCCCTAACT
CACAGGCACACAATTACTACTACTGTAGTTCCAGGGGAAACCGGAAGTAG
GTGCAAGTACGTCCTTTACTCTCTCAGTAAAGGTATATGTGCAAGGGGGG
ACTATAAATGCACGGTGAACTACCAGCACGGTTTGTACATCGTGCGGCAA
GAAAAACTCCATCTCCAAATCGTGTGTCATCATAAATCCCCGCGCATACA
TGTTACCGCCGGTCAACATAAATTCTCGCGGGGTTTCCCACCAGTTGGTC
AGGCTCGGCTGCACAATCCGTCGGGTGGTACACTACATCATGGATAGGAG
GGCGGTTGTCGTCTGGTTCGTGCTCGTTTTTTGGTTGGCCGGCGGGTGTT
TGATTGCCGACCGTTGTCTTTGGGGGGGGGGTGAAATCATTTTGTTTTGG
GGTGTAGTCAGGTACGTCGCTATTTACGGTCATATGGGATCGATTTGGCG
CCCCCAGTCGCCAGGCGGGGCCATGCCCTCACGGAATGGCAGAGCGGCCG
TGGCTGTTATTTAGGCGTCGGAGGTCCTGTGATGCTTGCCGCCGGCGTGT
TTTGTGTTGATGATATAATAGTCGCTCTGATGGTGTGCTCGAAGGTGGTA
AGGCACGGGTGATTGAGATGAAAACGCTCAGGCCTGAAAAAGTGTACCTG
GTACGTGCGAATGCGTATGCTGTTGTTCTTGATGCCCCCGTCGTCTCCCG
CTCCTCCGCTCCCATTCTCTTGGCGGCTGCGTTTCGACAGAGAACAGAAG
GCCCTGAAAAAGAAGCAGAAGCTCGAGGAAAAGATTGCTCAGAAACAGAA
GGCAAGGAACGTTTCGCGCATGCCTCGCTACGATAGTAGTGGCACGACCG
ATGTTGCACCCCGCTGGATTGGCACCTTTGGGAAAAGCTCCCTAAATAGT
TTTAGGGGTCTTCGTCCAAAAGTTGGCACCACCACGTCGTGCTGTTGAGT
GTTCCCTTTCGGCGTGTGTAGAGTGTGGATAGGGTAAGGGCGCCTTCCTA
CGTTTTATGAAACCATCGGACTTCGCACCATTCGCACCGCACTCTCGCTC
GGTATGCCCTTGAGTGTGTGCAGGACGCCTCGCTCGGTGAGTCCTGAAGT
GTGTGCAGGACAACGACGAGGAAAAAAAAACACTGTTTGTTCTTGATCTC
ACCCCTTAGCGTAGCCCCTCCTGCTCTTGGCGCCTCGCTTACCCTCCCTC
CACCCCCCCCCGCCGCATCTTCGCCGGTTTGCAAACGATTTTTGTGCGTG
CCAGGAAGAGGAGAAGAGGCTACGATCGTACGACTCCTTGTTCCAGGAGT
CAAAAATGGCATCAAATGCCGAGGCTGCGGCGTCAGAGGACGCCAGTGCT
TCCATCGCTTACGAAGACGACTTTATGGTGAGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig900:2057..6639+

>mRNA_S-dermatodea_contig900.17091.1 ID=mRNA_S-dermatodea_contig900.17091.1|Name=mRNA_S-dermatodea_contig900.17091.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at S-dermatodea_contig900:2057..6639+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTTTCTACTTTACTACCAGTGATGGTTTTCTACTTTACTACCAGTG
ACGACCACATGCTCTACATGGGCAAAGACAAATACGAGAACGAGGACCTG
ATCAGATACGGCTTCCCCGAAGACGTCTGGTTCCACGTGGACAACTTGAG
CTCCGCGCACGTCTACCTTCGCATGAAACGCGGAGAGAAGACGACCACAT
GCTCTACATGGGCAAAGACAAATACGAGAACGAGGACCTGATCAGATACG
GCTTCCCCGAAGACGTCTGGTTCCACGTGGACAACTTGAGCTCCGCGCAC
GTCTACCTTCGCATGAAACGCGGAGAGAAGCTAAAGGAGCTGGACCCCGC
GCTGCTGGTGGAGTGCTGCTCTCTCGTCAAGCTAAAGGAGCTGGACCCCG
CGCTGCTGGTGGAGTGCTGCTCTCTCGTCAAGGCGAACTCGATCGAGGGA
TGCAAGAAAAAGGACGTGCACGTGGTGTACACTCGGTGGCAGAACCTCAA
GAAGTTGCCGAGCTACGATGCGGGGCAGGCGAACTCGATCGAGGGATGCA
AGAAAAAGGACGTGCACGTGGTGTACACTCGGTGGCAGAACCTCAAGAAG
TTGCCGAGCTACGATGCGGGGCAGGTGGGGTACAGGGACGAAAGCCGAGT
GTTCAAGTGTCGCGTGGAGAAGAGCAACGCGATCGTGAACGCTTTGAATC
GCACCAAGCGCGAGGAGCATCCCGATCTCGCGGCACTGCAGGAGGAACGG
GCAGTTGAACACAGAAGGTGGGGTACAGGGACGAAAGCCGAGTGTTCAAG
TGTCGCGTGGAGAAGAGCAACGCGATCGTGAACGCTTTGAATCGCACCAA
GCGCGAGGAGCATCCCGATCTCGCGGCACTGCAGGAGGAACGGGCAGTTG
AACACAGAAGAGAACAGAAGGCCCTGAAAAAGAAGCAGAAGCTCGAGGAA
AAGATTGCTCAGAAACAGAAGGCAAGGAACAGAACAGAAGGCCCTGAAAA
AGAAGCAGAAGCTCGAGGAAAAGATTGCTCAGAAACAGAAGGCAAGGAAC
GAAGAGGAGAAGAGGCTACGATCGTACGACTCCTTGTTCCAGGAGTCAAA
AATGGCATCAAATGCCGAGGCTGCGGCGTCAGAGGACGCCAGTGCTTCCA
TCGCTTACGAAGACGACTTTATGGTGAGAGAAGAGGAGAAGAGGCTACGA
TCGTACGACTCCTTGTTCCAGGAGTCAAAAATGGCATCAAATGCCGAGGC
TGCGGCGTCAGAGGACGCCAGTGCTTCCATCGCTTACGAAGACGACTTTA
TGGTGAGA
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