mRNA_S-dermatodea_contig9.17085.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9.17085.1
Unique NamemRNA_S-dermatodea_contig9.17085.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9.17085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9contigS-dermatodea_contig9:10296..12328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size284
Cds size282
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9.17085.1prot_S-dermatodea_contig9.17085.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9 10297..12328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925378.1207576-CDS-S-dermatodea_contig9:10296..103441622925378.1207576-CDS-S-dermatodea_contig9:10296..10344Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 10297..10344 -
1694079892.6081138-CDS-S-dermatodea_contig9:10296..103441694079892.6081138-CDS-S-dermatodea_contig9:10296..10344Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 10297..10344 -
1622925378.1331766-CDS-S-dermatodea_contig9:11543..116151622925378.1331766-CDS-S-dermatodea_contig9:11543..11615Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 11544..11615 -
1694079892.618647-CDS-S-dermatodea_contig9:11543..116151694079892.618647-CDS-S-dermatodea_contig9:11543..11615Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 11544..11615 -
1622925378.1462681-CDS-S-dermatodea_contig9:12166..123281622925378.1462681-CDS-S-dermatodea_contig9:12166..12328Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 12167..12328 -
1694079892.629702-CDS-S-dermatodea_contig9:12166..123281694079892.629702-CDS-S-dermatodea_contig9:12166..12328Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 12167..12328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9.17085.1

>prot_S-dermatodea_contig9.17085.1 ID=prot_S-dermatodea_contig9.17085.1|Name=mRNA_S-dermatodea_contig9.17085.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=94bp
NNPGDKSCTLGQHHTYITPPPRPQLPRSQRNVISHQARGGHRFPQTVTEL
RLQMAVLGGLCAVVAAIAMIGWNVLVNERRRRERFYREQRRSEQ
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mRNA from alignment at S-dermatodea_contig9:10296..12328-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9.17085.1 ID=mRNA_S-dermatodea_contig9.17085.1|Name=mRNA_S-dermatodea_contig9.17085.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2033bp|location=Sequence derived from alignment at S-dermatodea_contig9:10296..12328- (Saccorhiza dermatodea SderLu1190fm monoicous)
AATAACCCTGGAGACAAAAGCTGTACCTTGGGCCAACACCACACATATAT
CACGCCCCCCCCCCGTCCCCAGCTCCCCAGGAGCCAGAGGAACGTCATCT
CGCATCAGGCTCGAGGGGGCCACCGCTTTCCCCAGACCGTAACCGAGCTC
CGTCTCCAGATGGTGAGCGTTTTTTTGAACAAAATGTGGATTAGAAACAA
CAGCATAAATCAAAGTGGCGCGCTCGCGCGGTACGCCTTGCAACTTGCCA
AGGGCGAGCGAGGCACACGCAGCCGCGAACGCTACGCGTGGTACGCCTCG
GGTATCAACGCAGGGACGTGTACACCCCCTCACGAGCGAACAGCGCGTTT
TCTCTGCCGCGGCCGACGGATGTGCTATCCGCCGCCCCCGCTATATGGCT
GCGGCACGAGCACGGTACGAGTCTCACATCGACCACCAAACGCGAGGCTT
TGAGATTGCGTATAAATAGCAACCAACTTTTTTTGCACGTCTGAAATAAT
ATCCTTTGTCTTGTGTATAATAGTCTCTTGGTTCCCTCTTTGTAAGTATC
ATAGTGCCACGAAGTGCCCTACCCTTACGCACCGCACCGCCCTCCACGTG
CGACACCAGCTGACGTCGCCTTTCGATCGTTTGTTGACCAACATGTATAT
CTATATGTATGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATATCTTC
CCTCGCGGGACAGGCTGTGCTAGGAGGACTGTGTGCGGTGGTGGCTGCGA
TCGCTATGATTGGCTGGAACGTCTTGGTTAATGAGGTGATGAGCTCTACA
TATCTATATTCATACGTGGCATGATAAATACTCCGAGTATGATACGTGGA
ACGAAGTGTGATATGATATGATACGGCAAGTGGCTTCTGGGATACCGAAT
CTCCATCTCAACCATCGCTGATCGGGATTCGGCCGTATGTATGTATATAT
GTGTCGACGTATGTACTGTATTACAGAGACGGGGTTAAATGTATCATGTT
ATTTTGTTGTTGCCTGACTGGCGCGTTCCAGCGTGGTCGCGCCCTTGAAC
GCGATCGCCCTCGTCTATCAACACACACCAGAGTCTATAAGTAGTAGTAC
AGTAGTTGCCCCTTCAATACGTAAACGGCACACACACGCTCTTTGAATCA
CGGAACACAACTTTGATTTTTTACTTAAAAACAACGTAAATATGGCAAAA
TATGGCAGCAAGCCATATACATATACATACAGTTTTGTAACTAACCTGTG
GCGTATCAAAGATCGTGGGTGGATTTGTTTGGCGATATTGACGGACCCCC
TCATACATGTCCGCATATGTCCGCATGTATATATCCGCTCGTCGCTCGCG
CGGCCCTCGCGCGGCCCTCGGACCTCGCTCGTGCTCAACTGACGTCTTTC
GAGTGCCGCGGATCAACGGAGATAGTATCTGGCACGACATTTCACCCCCC
CCCTGGTTTTCACTTTCTTTGCCATTTCTCATCCGTCCTCGCACATGGAT
TGGTTAGAGCTATCATATTATACTGTATATTATTGACGTACCTGGGTATT
AATAGTAGTATATTATATTTATAAAAAACAAGATCTAGTTTACATGTACA
GAGTACATCCCTAACTCTTACTTCTAGAATATACAAGTATTTACTAGCAC
ATGCCGCGGAAAGCACGAGAAGAGCGCGAGTACAGAGTAAGCCAAAAAAC
CGAGAAATCGGTCTATAACAGCTGTGGGAGTGCCGGACCCAATGCATCCC
ATTCGCGATAAAAATCAAAGGTGAGAACCGGGGATAAGAGAGATGGGATG
ATTGATCCCTTGTGACCACAGACGGCCCTCGGAAAAAGCAAGTCTATCAT
ATGTCTGCCAAACAACAAGAACAACATGCGTGCTGCGCGCTGTACCTTCC
TTGTCATCCGCCGCAAACAATGTTCATAGTTCATACAATGACAAGTAACA
ACGACCAAAACCGTTCGGACGCTGCGTCGAACAGAGACGACGAAGGGAAC
GGTTCTATCGAGAGCAGCGAAGGAGCGAGCAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9:10296..12328-

>mRNA_S-dermatodea_contig9.17085.1 ID=mRNA_S-dermatodea_contig9.17085.1|Name=mRNA_S-dermatodea_contig9.17085.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at S-dermatodea_contig9:10296..12328- (Saccorhiza dermatodea SderLu1190fm monoicous)
AATAACCCTGGAGACAAAAGCTGTACCTTGGGCCAACACCACACATATAT
CACGCCCCCCCCCCGTCCCCAGCTCCCCAGGAGCCAGAGGAACGTCATCT
CGCATCAGGCTCGAGGGGGCCACCGCTTTCCCCAGACCGTAACCGAGCTC
CGTCTCCAGATGAATAACCCTGGAGACAAAAGCTGTACCTTGGGCCAACA
CCACACATATATCACGCCCCCCCCCCGTCCCCAGCTCCCCAGGAGCCAGA
GGAACGTCATCTCGCATCAGGCTCGAGGGGGCCACCGCTTTCCCCAGACC
GTAACCGAGCTCCGTCTCCAGATGGCTGTGCTAGGAGGACTGTGTGCGGT
GGTGGCTGCGATCGCTATGATTGGCTGGAACGTCTTGGTTAATGAGGCTG
TGCTAGGAGGACTGTGTGCGGTGGTGGCTGCGATCGCTATGATTGGCTGG
AACGTCTTGGTTAATGAGAGACGACGAAGGGAACGGTTCTATCGAGAGCA
GCGAAGGAGCGAGCAGAGACGACGAAGGGAACGGTTCTATCGAGAGCAGC
GAAGGAGCGAGCAG
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