mRNA_S-dermatodea_contig9.17084.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9.17084.1
Unique NamemRNA_S-dermatodea_contig9.17084.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9.17084.1 vs. uniprot
Match: A0A6H5KVL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL7_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.470e-23
Identity = 69/125 (55.20%), Postives = 80/125 (64.00%), Query Frame = 1 
Query:   97 PVSPASSPPPVFHDLVLILDAPALPPPRRKLPELPEESDTS-TDMANQPLSPAGGCDLSPGFHLSVPWSPPPRRGVARTRTR----GNRPRTFSEYTAAPTTDP----PVRHVRAGSATADLSLV 444
            P +PA+  P VF+DLVLILDAPALPP   KLP LPEE+D S T      LSP+ GCDLSPGFHLS PWSP   +G AR   R     NRPRTFSEY+A P + P     + H R+ S    LS+V
Sbjct:  129 PETPAT--PAVFNDLVLILDAPALPPAPWKLPNLPEENDASCTGGTTTDLSPSRGCDLSPGFHLSAPWSP--SKGRARYDRRRSPVSNRPRTFSEYSAGPVSGPVPPPSLLHERSTSDGPGLSIV 249
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9.17084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVL7_9PHAE1.470e-2355.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9contigS-dermatodea_contig9:8863..10227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_002490.1
Exons2
Model size447
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925378.0747118-CDS-S-dermatodea_contig9:8864..90951622925378.0747118-CDS-S-dermatodea_contig9:8864..9095Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 8865..9095 -
1694079892.5846322-CDS-S-dermatodea_contig9:8864..90951694079892.5846322-CDS-S-dermatodea_contig9:8864..9095Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 8865..9095 -
1622925378.0880597-CDS-S-dermatodea_contig9:10014..102271622925378.0880597-CDS-S-dermatodea_contig9:10014..10227Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 10015..10227 -
1694079892.5941353-CDS-S-dermatodea_contig9:10014..102271694079892.5941353-CDS-S-dermatodea_contig9:10014..10227Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 10015..10227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9.17084.1prot_S-dermatodea_contig9.17084.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9 8865..10227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9.17084.1

>prot_S-dermatodea_contig9.17084.1 ID=prot_S-dermatodea_contig9.17084.1|Name=mRNA_S-dermatodea_contig9.17084.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=148bp
LDESNAASPPPSCVEHPFPPTPSTAPCSAERCPVSPASSPPPVFHDLVLI
LDAPALPPPRRKLPELPEESDTSTDMANQPLSPAGGCDLSPGFHLSVPWS
PPPRRGVARTRTRGNRPRTFSEYTAAPTTDPPVRHVRAGSATADLSLV
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mRNA from alignment at S-dermatodea_contig9:8863..10227-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9.17084.1 ID=mRNA_S-dermatodea_contig9.17084.1|Name=mRNA_S-dermatodea_contig9.17084.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1365bp|location=Sequence derived from alignment at S-dermatodea_contig9:8863..10227- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCGACGAGTCCAACGCCGCATCCCCGCCACCATCATGCGTCGAGCACCC
ATTCCCCCCGACTCCTTCAACTGCGCCGTGTTCGGCCGAGCGGTGTCCTG
TCTCCCCCGCCTCTTCTCCACCGCCGGTATTCCACGATCTGGTCCTGATC
CTCGACGCTCCGGCCCTGCCACCCCCTCGACGGAAGCTTCCCGAGCTGCC
CGAGGAGTCTGATGTGAGCACTATTATGACGCTGTAACTTACTGCTTACC
CCGTGTTGCAGTTATTTCACTGTCGTCTGCTGTTTTAGTTGTTTCCCGGC
TGTCTGTTTTGCTTGTTCTTGTTGAGAGCGGAGAGCCCTGATCTGAACAC
GATCTTCTCTCAGTCTGGTCTCGGCGCAGCATGTTTTTTCTGTGGGTTGG
GTTTGTTTGTTGGCTCGTTGTGCGTACATCTGATGCACAGTATTACCTAT
CCTACCTTGTCTGTTCTTACTTGGGAGTCTAGCGAGGCGCCGCGGAGAGC
GGGGATTCGCCTGCGCTCAGTTGTGCTAGGGTATACGCTCGTCGTGCGTG
TGCGTCAAGCATTAGAGGGTGTGCGCATTTGTATGATGCGCGAAATTGAA
CGTTCATGCAAGATATGGAAATATGCCAGTTAGGGATGTACATGGGAACT
AGATGTTGTTTTTTTAATATATTATCGATCGCTCGTACGGGGCCACGCAC
CACTCTCTTCGTTGCACATGTGTGAGAGGTATGATACGCACATCGCATCA
GCTCCCCCCTTCCGCCTTCCGTTGTCACTATTGATAAGACGGCGGATGGC
AGTTTACAGGTTGCCCTTCTTGCTTACTGCGCTACAGACAGTACAGTAGC
CAAACCTTGAACCTCTCCCTTAGAGATGAATCGAGCGAGATCGCCAACCC
CCGCCGGTGCGTTCCGCGACCCTCACCGGTGATGTGATCAGAGTGTCCAA
AAACACTACCTGTACAACAACCGATCCTTGCAAATGTGCACTAAATACGC
TAAACTACCCCCCTACGCCCCCCACCCCCTTTCCCCCCCTCATTTACACC
CCCTCCCCCCCTCCCCGCGTGTGCGCCCTTATAACGCCTGGCTCCGTCGC
GCACCTCCGGCGCTACCTCTGGCGTTACGCAGACCTCCACGGATATGGCG
AACCAACCGTTGTCCCCGGCAGGAGGGTGCGACCTTTCGCCTGGGTTCCA
CCTCTCCGTGCCGTGGTCCCCTCCCCCGAGACGCGGCGTCGCGCGGACCA
GGACGAGGGGCAATCGCCCCCGAACCTTTTCGGAGTACACGGCCGCCCCA
ACTACGGACCCGCCGGTGCGTCACGTCAGGGCGGGAAGCGCGACGGCGGA
CCTGTCGTTGGTGCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9:8863..10227-

>mRNA_S-dermatodea_contig9.17084.1 ID=mRNA_S-dermatodea_contig9.17084.1|Name=mRNA_S-dermatodea_contig9.17084.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at S-dermatodea_contig9:8863..10227- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCGACGAGTCCAACGCCGCATCCCCGCCACCATCATGCGTCGAGCACCC
ATTCCCCCCGACTCCTTCAACTGCGCCGTGTTCGGCCGAGCGGTGTCCTG
TCTCCCCCGCCTCTTCTCCACCGCCGGTATTCCACGATCTGGTCCTGATC
CTCGACGCTCCGGCCCTGCCACCCCCTCGACGGAAGCTTCCCGAGCTGCC
CGAGGAGTCTGATCTCGACGAGTCCAACGCCGCATCCCCGCCACCATCAT
GCGTCGAGCACCCATTCCCCCCGACTCCTTCAACTGCGCCGTGTTCGGCC
GAGCGGTGTCCTGTCTCCCCCGCCTCTTCTCCACCGCCGGTATTCCACGA
TCTGGTCCTGATCCTCGACGCTCCGGCCCTGCCACCCCCTCGACGGAAGC
TTCCCGAGCTGCCCGAGGAGTCTGATACCTCCACGGATATGGCGAACCAA
CCGTTGTCCCCGGCAGGAGGGTGCGACCTTTCGCCTGGGTTCCACCTCTC
CGTGCCGTGGTCCCCTCCCCCGAGACGCGGCGTCGCGCGGACCAGGACGA
GGGGCAATCGCCCCCGAACCTTTTCGGAGTACACGGCCGCCCCAACTACG
GACCCGCCGGTGCGTCACGTCAGGGCGGGAAGCGCGACGGCGGACCTGTC
GTTGGTGACCTCCACGGATATGGCGAACCAACCGTTGTCCCCGGCAGGAG
GGTGCGACCTTTCGCCTGGGTTCCACCTCTCCGTGCCGTGGTCCCCTCCC
CCGAGACGCGGCGTCGCGCGGACCAGGACGAGGGGCAATCGCCCCCGAAC
CTTTTCGGAGTACACGGCCGCCCCAACTACGGACCCGCCGGTGCGTCACG
TCAGGGCGGGAAGCGCGACGGCGGACCTGTCGTTGGTG
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