mRNA_S-dermatodea_contig9.17083.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9.17083.1
Unique NamemRNA_S-dermatodea_contig9.17083.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9.17083.1 vs. uniprot
Match: D7FLC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC2_ECTSI)

HSP 1 Score: 350 bits (897), Expect = 2.700e-112
Identity = 164/193 (84.97%), Postives = 178/193 (92.23%), Query Frame = 1 
Query:  271 EEGDGVDYSADPLTAFLGKFLPSGEKSTPPQAEDLVFNAGEEAKRRGMTANEMAVAVDEGLRRNGWFVTGRVDASLFSDSFFFSDPQVSLTGVGKYAEGVAKLFDQEESRCDVISTETEGEDVVVRWRLSGRVNLPFKPPIKPYVVTTTFERDADGLLSTQRDEFAIAGWDILLHAVFPGHPFGAQPAPPVQP 849
            EEGDGVDYSADP+TAFLGKFLP GEKS PPQA+DLVFN GE+AKRRGM A EMA A+DE LR NGWFVTGR+D+SLFS+ FFFSDPQVSLTGV KYAEGVAKLF+QEESRCDVISTE +GED+VV WRLSGR+NLPF PPIKPY+VTTTFERD+DGLLSTQRDEF+IAGWDILLHAVFPGHPFGA PAPPV P
Sbjct:   56 EEGDGVDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRIDSSLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYIVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPP 248
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BLAST of mRNA_S-dermatodea_contig9.17083.1 vs. uniprot
Match: A0A6H5JBW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW5_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 5.580e-82
Identity = 125/146 (85.62%), Postives = 134/146 (91.78%), Query Frame = 1 
Query:  412 MTANEMAVAVDEGLRRNGWFVTGRVDASLFSDSFFFSDPQVSLTGVGKYAEGVAKLFDQEESRCDVISTETEGEDVVVRWRLSGRVNLPFKPPIKPYVVTTTFERDADGLLSTQRDEFAIAGWDILLHAVFPGHPFGAQPAPPVQP 849
            M A EMA A+DE LR NGWFVTGRVDASLFS+ FFFSDPQVSLTGV KYAEGVAKLF+QEESRCDVISTE +GED+VV WRLSGR+NLPF PPIKPY+VTTTFERD+DGLLSTQRDEF+IAGWDILLHAVFPGHPFGA PAPPV P
Sbjct:    1 MAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYIVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPP 146
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BLAST of mRNA_S-dermatodea_contig9.17083.1 vs. uniprot
Match: A0A383W0Z3_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W0Z3_TETOB)

HSP 1 Score: 174 bits (441), Expect = 6.290e-46
Identity = 95/186 (51.08%), Postives = 124/186 (66.67%), Query Frame = 1 
Query:  298 ADPLTAFLGKFLPSGEKSTPPQAEDLVFNAGEEAKRRGMTANEMAVAVDEGLRRNGWFVTGRVDASLFSDSFFFSDPQVSLTGVGKYAEGVAKLFDQEESRCDVISTET--EGEDVVVRWRLSGRVNLPFKPPIKPYVVTTTFERDAD-GLLSTQRDEFAIAGWDILLHAVFPGHPFGAQPAPPVQ 846
            +DP+  FLG+FLPS  ++   +   + F+A    K  G +  +MA  V+ GL R+ WFVTG VD  LFSDSF F D  V+ TG+  YA GV KLFDQ  S+ ++IS E   + + +VV WRL GRVNLPFKP IKPYVVTTT   D D GL+ +Q DEF++ GWD+LL ++  G  FGA+PAPPV+
Sbjct:   42 SDPVNQFLGQFLPSN-RAAKDELAGIDFDA---PKLSGRSIQQMAELVEAGLSRSQWFVTGEVDPRLFSDSFAFKDESVATTGIKAYATGVRKLFDQATSKVELISVEARPDTQALVVVWRLEGRVNLPFKPKIKPYVVTTTLGLDPDSGLICSQLDEFSVPGWDLLL-SILLGEGFGAKPAPPVE 222
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BLAST of mRNA_S-dermatodea_contig9.17083.1 vs. uniprot
Match: A0A7J7PWC3_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PWC3_9CHLO)

HSP 1 Score: 172 bits (436), Expect = 4.940e-45
Identity = 92/186 (49.46%), Postives = 122/186 (65.59%), Query Frame = 1 
Query:  298 ADPLTAFLGKFLPSGEKSTPPQAEDLVFNAGEEAKRRGMTANEMAVAVDEGLRRNGWFVTGRVDASLFSDSFFFSDPQVSLTGVGKYAEGVAKLFDQEESRCDVISTETEGED--VVVRWRLSGRVNLPFKPPIKPYVVTTTFERD-ADGLLSTQRDEFAIAGWDILLHAVFPGHPFGAQPAPPVQ 846
            +DP+  FLG+FLPS   +     ++LV    ++ K  G +  EMA  V+ GL ++ WFVTG VD  LFSDSF F D  V+ TG+  YA GV KLFDQ  S+ ++++ E +  D  +VV WRL GRVNLPFKP IK YVVTTT   D   GL+++Q DEF++ GWD+LL  +  G  FGA+PAPPV+
Sbjct:   63 SDPVNQFLGQFLPSNRAAK----DELVGVDFDQPKLSGRSIQEMAQLVEAGLSKSQWFVTGEVDPRLFSDSFAFKDESVATTGIKAYATGVRKLFDQATSKVELVTVEPQPADQAIVVTWRLEGRVNLPFKPKIKAYVVTTTLGVDPGTGLINSQVDEFSVPGWDLLLSTLL-GEGFGAKPAPPVE 243
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BLAST of mRNA_S-dermatodea_contig9.17083.1 vs. uniprot
Match: A0A250WW06_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WW06_9CHLO)

HSP 1 Score: 165 bits (418), Expect = 2.510e-43
Identity = 87/184 (47.28%), Postives = 115/184 (62.50%), Query Frame = 1 
Query:  298 ADPLTAFLGKFLPSGEKSTPPQAEDLVFNAGEEAKRRGMTANEMAVAVDEGLRRNGWFVTGRVDASLFSDSFFFSDPQVSLTGVGKYAEGVAKLFDQEESRCDVISTETEGED--VVVRWRLSGRVNLPFKPPIKPYVVTTTFERDADGLLSTQRDEFAIAGWDILLHAVFPGHPFGAQPAPPV 843
            +DP+  FLG FLPSGE  +    + + +      K  G+   ++A  ++  L  + WFVTG VD SLF+  F F D  V+  G+  YAEGV K+FDQE SR +V+S +T+     +VV WRL G VNLPFKP I PYVVTTTFE D+DGL+S+Q DEF++ GW +L  A+  G   G  PA PV
Sbjct:   15 SDPVNGFLGNFLPSGESVSASSLDQIDWTT---PKATGLEIRQLADRIEAKLSMSEWFVTGMVDPSLFAKEFSFKDDSVATKGIRSYAEGVRKIFDQETSRAEVVSVDTDAAKGIIVVTWRLEGCVNLPFKPRITPYVVTTTFEVDSDGLISSQLDEFSVPGWRLLAGALL-GSWAGPTPALPV 194
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BLAST of mRNA_S-dermatodea_contig9.17083.1 vs. uniprot
Match: A0A7R9VWZ2_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VWZ2_9CHLO)

HSP 1 Score: 164 bits (415), Expect = 3.650e-42
Identity = 94/197 (47.72%), Postives = 122/197 (61.93%), Query Frame = 1 
Query:  262 GGGEEGDGVDYSADPLTAFLGKFLPSGEKSTPPQAEDLVFNAGEEAKRRGMTANEMAVAVDEGLRRNGWFVTGRVDASLFSDSFFFSDPQVSLTGVGKYAEGVAKLFDQEESRCDVISTE--TEGEDVVVRWRLSGRVNLPFKPPIKPYVVTTTFERDADGLLSTQRDEFAIAGWDILLHAVFPGHPFGAQPAPPVQ 846
            GGG+ G   DYS DP+  FLG FLP   ++   +AE L   A +  K  G++ ++MA  +   L +  WFVTG V+ SLFSD F F D  V+  G+  YA GV KLFDQ+ +R ++I+ E  T    VVV WRL GRVNLPF+P I PYVVTTT   DA GL+ +Q DEF++ GW +LL A+  G   G  PAPP +
Sbjct:   57 GGGDGGSKYDYS-DPVNQFLGNFLP---RARDVEAE-LSHIAWDTPKATGLSLDQMAERLSAALAQKEWFVTGDVEPSLFSDEFAFKDDSVATLGIRNYALGVRKLFDQDTARAELIAVEPDTSRGGVVVTWRLEGRVNLPFRPTIPPYVVTTTLATDAQGLIISQLDEFSVPGWQLLLGALL-GAWAGPAPAPPAE 247
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BLAST of mRNA_S-dermatodea_contig9.17083.1 vs. uniprot
Match: R1EZP5_EMIHU (Uncharacterized protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EZP5_EMIHU)

HSP 1 Score: 152 bits (384), Expect = 3.110e-36
Identity = 93/190 (48.95%), Postives = 110/190 (57.89%), Query Frame = 1 
Query:  289 DYSA-DPLTAFLGKFLPSGEKSTPPQAEDLVFNAG-EEAKRRGMTANEMAVAVDEGLRRNGWFVTGRVDASLFSDSFFFSDPQVSLTGVGKYAEGVAKLFDQEESRCDVISTETEG-EDVVVRWRLSGRVNL-PFKPPIKPYVVTTTFERDADGLLSTQRDEFAIAGWDILLHAVFPG-HPFGAQPAPPV 843
            DY A +PL + LG  LPS        A D + +   E  K RG++  +MA  +D GLR  GWFVTGR    LFSDSF FSDP V L G   Y   V +LF+QE S  +V+     G   + V WRLSG VNL  F   IKPYVVTTT E DADGL+S Q D F+I G+DILL A+ P   P     APPV
Sbjct:   29 DYEAKNPLISLLGTLLPSKGGEAQQTAVDALADIDWESPKARGLSTEQMAGRIDTGLRERGWFVTGRGMPELFSDSFRFSDPDVQLDGYEPYCRQVRRLFNQETSAMEVVCAAATGPRAITVVWRLSGGVNLGAFGVAIKPYVVTTTLETDADGLVSAQEDHFSIPGYDILLSALLPPLRPLLQPEAPPV 218
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BLAST of mRNA_S-dermatodea_contig9.17083.1 vs. uniprot
Match: A0A7S3ZJJ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJJ4_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.030e-34
Identity = 84/181 (46.41%), Postives = 107/181 (59.12%), Query Frame = 1 
Query:  265 GGEEGDGVDYSADPLTAFLGKFLPSGEKSTPPQAEDLVFNAGEEAKRRGMTANEMAVAVDEGLRRNGWFVTGRVDASLFSDSFFFSDPQVSLTGVGKYAEGVAKLFDQEESRCDVISTETEGEDVVVRWRLSGRVNLPFKPPIKPYVVTTTFERDADGLLSTQRDEFAIAGWDILLHAVFP 807
            GGEE    DY  +P+T FLG+F+P   K  P     +      +  +  +   E+  A+D GLR   WFVTG+V    FSD F F DP VSLTG+  YAEGVA+LF  E++RC+VI+    GE++ V WRLSG V +     IKPYVV TTF R  DGL+  Q D F+I GW ILL  + P
Sbjct:   70 GGEE----DY-VNPVTEFLGRFIP---KQAP-----IELGVDWDQPKTPLPLGELVGALDRGLREREWFVTGKVLPEYFSDDFKFEDPDVSLTGIQNYAEGVARLFG-EDARCEVIACAPRGEEIAVDWRLSGSVRVGPGATIKPYVVHTTF-RVRDGLVVFQEDAFSIPGWQILLGVLLP 235
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BLAST of mRNA_S-dermatodea_contig9.17083.1 vs. uniprot
Match: A0A7S3Z129_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z129_9EUKA)

HSP 1 Score: 137 bits (345), Expect = 1.570e-33
Identity = 75/149 (50.34%), Postives = 96/149 (64.43%), Query Frame = 1 
Query:  373 LVFNAGEEAKRRGMTANEMAVAVDEGLRRNGWFVTGRVDASLFSDSFFFSDPQVSLTGVGKYAEGVAKLFDQEES--RCDVISTE-TEGEDVVVRWRLSGRVNLPFKPPIKPYVVTTTFERDADGLLSTQRDEFAIAGWDILLHAVFPG 810
            L   + E+ K  G+TA+EMA  V+EGLR   WFVTG VDA+LF+DSF FSDP VS + + +YA GV++ F Q ES  R  VI  + T+  ++ V W L  +VNLP KP IKPY+V TT+  +A GL+  Q D FAI  WDI L A   G
Sbjct:   10 LCATSTEKPKVEGLTASEMAGRVEEGLRERSWFVTGLVDATLFADSFQFSDPSVSASSLEEYARGVSRFFTQGESGARMKVIYAKPTKPNEIQVCWWLDAQVNLPGKPRIKPYIVITTYRINAKGLICYQEDAFAIPEWDIALSAFLKG 158
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BLAST of mRNA_S-dermatodea_contig9.17083.1 vs. uniprot
Match: A0A6T8H729_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8H729_HEMAN)

HSP 1 Score: 139 bits (350), Expect = 1.590e-33
Identity = 84/218 (38.53%), Postives = 116/218 (53.21%), Query Frame = 1 
Query:  217 RSESSRTRPKAQGGDGGGEEGDGVDYSADPLTAFLGKFLPSG------EKSTPPQAEDLVFNAGEEAKRRGMTANEMAVAVDEGLRRNGWFVTGRVDASLFSDSFFFSDPQVSLTGVGKYAEGVAKLFDQEESRCDVISTETEGEDVV-VRWRLSGRVNLPFKPPIKPYVVTTTFERDADGLLSTQRDEFAIAGWDILLHAVFPG-HPFGAQPAPPVQ 846
            +S + + R   +G + GG +GD ++Y  DPLT  L  FLP G      +KS+   A D       + K  G++ ++MA  VD+GLR   WFVTG     LF   F F DP V   G+ +YA GV +LF+QE S   V+      E ++ V+WRL G VN+     IKPYVV T  E   DGL+  Q D F+I  W++L+ A  P   P    P PP++
Sbjct:   33 KSRTFQLRGSQRGQEDGGGKGDKLEYR-DPLTKVLANFLPGGKPGKSRDKSSAMDAIDW-----NKPKSSGLSVDQMAARVDQGLRERAWFVTGEALPELFHPDFEFKDPNVKTKGIEEYARGVHRLFNQEASSMQVVECAVSSEKIIGVKWRLEGAVNVGPGLEIKPYVVYTDLEVGQDGLIIAQEDRFSIPAWELLIWAFLPFLRPMLPPPCPPIE 244
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9.17083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLC2_ECTSI2.700e-11284.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBW5_9PHAE5.580e-8285.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A383W0Z3_TETOB6.290e-4651.08Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A7J7PWC3_9CHLO4.940e-4549.46Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A250WW06_9CHLO2.510e-4347.28Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A7R9VWZ2_9CHLO3.650e-4247.72Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
R1EZP5_EMIHU3.110e-3648.95Uncharacterized protein n=3 Tax=Emiliania huxleyi ... [more]
A0A7S3ZJJ4_9STRA1.030e-3446.41Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A7S3Z129_9EUKA1.570e-3350.34Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A6T8H729_HEMAN1.590e-3338.53Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9contigS-dermatodea_contig9:1079..6693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score351.7
Seed ortholog evalue3.1e-94
Seed eggNOG ortholog2880.D7FLC2
EggNOG OGs2D8NW@1,2S4PV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionProtein of unknown function DUF2358
Ec32 orthologEc-12_007600.1
Exons5
Model size2292
Cds size801
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925378.2007575-UTR-S-dermatodea_contig9:1078..11381622925378.2007575-UTR-S-dermatodea_contig9:1078..1138Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9 1079..1138 +
1694079892.642113-UTR-S-dermatodea_contig9:1078..11381694079892.642113-UTR-S-dermatodea_contig9:1078..1138Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9 1079..1138 +
1622925378.2649734-UTR-S-dermatodea_contig9:5262..66931622925378.2649734-UTR-S-dermatodea_contig9:5262..6693Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9 5263..6693 +
1694079892.7257657-UTR-S-dermatodea_contig9:5262..66931694079892.7257657-UTR-S-dermatodea_contig9:5262..6693Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9 5263..6693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925378.213238-CDS-S-dermatodea_contig9:1138..14531622925378.213238-CDS-S-dermatodea_contig9:1138..1453Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 1139..1453 +
1694079892.6576715-CDS-S-dermatodea_contig9:1138..14531694079892.6576715-CDS-S-dermatodea_contig9:1138..1453Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 1139..1453 +
1622925378.2239442-CDS-S-dermatodea_contig9:3510..36661622925378.2239442-CDS-S-dermatodea_contig9:3510..3666Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 3511..3666 +
1694079892.6693795-CDS-S-dermatodea_contig9:3510..36661694079892.6693795-CDS-S-dermatodea_contig9:3510..3666Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 3511..3666 +
1622925378.2342594-CDS-S-dermatodea_contig9:4017..40851622925378.2342594-CDS-S-dermatodea_contig9:4017..4085Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 4018..4085 +
1694079892.6799912-CDS-S-dermatodea_contig9:4017..40851694079892.6799912-CDS-S-dermatodea_contig9:4017..4085Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 4018..4085 +
1622925378.2454305-CDS-S-dermatodea_contig9:4523..46571622925378.2454305-CDS-S-dermatodea_contig9:4523..4657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 4524..4657 +
1694079892.6897829-CDS-S-dermatodea_contig9:4523..46571694079892.6897829-CDS-S-dermatodea_contig9:4523..4657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 4524..4657 +
1622925378.2551086-CDS-S-dermatodea_contig9:5134..52621622925378.2551086-CDS-S-dermatodea_contig9:5134..5262Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 5135..5262 +
1694079892.7104805-CDS-S-dermatodea_contig9:5134..52621694079892.7104805-CDS-S-dermatodea_contig9:5134..5262Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9 5135..5262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9.17083.1prot_S-dermatodea_contig9.17083.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9 1139..5262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9.17083.1

>prot_S-dermatodea_contig9.17083.1 ID=prot_S-dermatodea_contig9.17083.1|Name=mRNA_S-dermatodea_contig9.17083.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=267bp
MHSRATCFLLYVALRACAAFQLPQLIVTSATSQSRHMLNIRSSRPPGTTC
AQRSESSRTRPKAQGGDGGGEEGDGVDYSADPLTAFLGKFLPSGEKSTPP
QAEDLVFNAGEEAKRRGMTANEMAVAVDEGLRRNGWFVTGRVDASLFSDS
FFFSDPQVSLTGVGKYAEGVAKLFDQEESRCDVISTETEGEDVVVRWRLS
GRVNLPFKPPIKPYVVTTTFERDADGLLSTQRDEFAIAGWDILLHAVFPG
HPFGAQPAPPVQPRDV*
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mRNA from alignment at S-dermatodea_contig9:1079..6693+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9.17083.1 ID=mRNA_S-dermatodea_contig9.17083.1|Name=mRNA_S-dermatodea_contig9.17083.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5615bp|location=Sequence derived from alignment at S-dermatodea_contig9:1079..6693+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTTGGTTGATTGACCTTGCCCTTCATTGACTTCTTGGCACGGCCTGTAC
ATCTGGTGCAATGCACAGTCGCGCCACGTGTTTCCTGCTATATGTGGCGC
TGCGGGCATGCGCCGCTTTTCAGCTGCCCCAGTTGATCGTCACAAGCGCG
ACGTCCCAATCGCGACACATGTTGAACATAAGAAGTAGTAGGCCTCCTGG
AACAACATGCGCACAGAGGAGCGAATCGTCGCGGACGAGACCTAAGGCCC
AGGGGGGCGATGGCGGCGGCGAGGAGGGCGACGGCGTGGACTACTCGGCT
GATCCACTCACCGCATTTCTTGGAAAGTTTCTGCCCAGCGGAGAAAAGAG
CACTCCACCGCAGGCGGAGGATCTGGCAAGTTCTGTACAGACTTTTTCCT
CTGTGTTTTACATTATCACGTTGTCACACAACGCACATACTTGCACATAC
ACAAGAGTATGTACTGTACTTGTACCATTATCAAGTTGACCTGTAGACTC
TTGTCCCACATTCAGCTGTACCACGAGTATACATCATGATCTCATACAAG
TACCTGGCAGAGTACAAACAAACTGCTGTAGCAATACAAGTACAGAGTAT
GCCGAAGGAGAGGATGCCCTGCATGAAGCACAATCAGGAGTGTGCGCTAT
ACCTCATGTAGTATGCACTGCTGCTTGCTTGCTTCGGCGGGGACGATCGA
GCGATCTGGGAATAGGCAAAACGTATCGATATTCCCCACTCGCTCCACAA
ACACGAGTCAGGACAAGTCAGGAGTATAGCATTAATAGCGTCTTCTTCAG
CGTGCCATCGTCGTACTGCCATACTGCCATCTACAGAATTACAGCTGCTA
CAAGTTGACAGCAGTGTCGTTCAGTGCAGAGTCTCCCAACATATATTAAA
ACATGGTGTTGCAACGCGGTGGGACAATATTTTGCTTTTTTATACAGGTA
CTCGTGCACTTGTTCACGGATACTATTAAGAGTATACTAGTGAGAGCGGT
ATCTTCGCTCCCTTAATTGTACCAGGTATACTCCATCTGCAGTCGTAGAT
TTAGGTAGCTGCATATACGGCCGTCAGGGTGGGCTAGTGTTATGGTTACG
GTATCGATCTCCGTAGAGCGTTGATGTTATGATATCCGTAGATTTATCGT
GTAGGAGTTTCACATATGTAGCATGTCGACGCAGTATTGAGTAAGGGTCC
CACAGGGGCTCACCCCCAGCGAGCGCTCTCCTCTCTAAGAGCTGTGTGCT
GTGTGAGAACCAATAACAAGTGAGTGTGGACTACAAGCTTAACGAGATGC
TCTATAATAGCACCGAGACCCAAGGACCATTTTGTCTTTATAACACATGT
GCACATAAAATCATACTGGAATTACATTTACAGGCAGGATCGTAGAGGTT
TCAACTCTAACAGTCGACAGGCCGGCGCGTCGACAACAATTCATGGGGAT
CGTGCGCATACTGAAGAAATGATCCCACCACGACTCATGGCATGAGCGCT
ATCAAACGTACTGTGTACAACAACTACTACTGCTGTCAGTACAATATTAA
TAGCATCACATGGGTATCATCCAACATTCATGAATCGGGCGCGAAACTTC
TGATGGCCTATATAATTTGTGAGTTGCTTGGCTTGGAAAGTTTCTGCGAC
TGCACACACCACAGCCCAACTTTTGTAGACTTGGCGCTGCAGTGGTTGCG
ACCGGCCAACCAACCAGCGCGAATCATGACTACAGTACACAGAGGGGGCC
TGAGAGGCGAGTGTTCCTGCACAAAAGTTGATAAAGGGCCGATTTCGTAT
GCATTCGTCTGATATGATTATGTGTGATTAGCTCTAAAAGACATGAGATG
ACATGATATACTTCAGCTCGTACTCTGCTGTGTGATATGTGCCAACTCAT
TTTGCCCCGCCGAGTTCGAATTCGCCCGACGTTCGAGCGCAACATTGATT
GCCCTTTTCCTGAAGCCAAGCCTCAAATGCCAACGGGATGTCAACCTCTT
TCGTAGGGGCGACATCGGTCCCGCTCTAGTTGGCTTCCTATATCCTACAT
ATGAAAGAAGTCTTTTTATATAATTGTAAAAGAAGTGGCACTCCCGAAAT
CCGCGCTGGAGGTCTACCGTTAGAGGCACTCTACGCCTCAAGAGGAAATT
CTCAGGAATCGCCCCCCCCGCCCCGAATACAGTACCAGCCAGAGTATTGG
CGATGGGATCAACAGTAATGGGTATAGACGACTAGACGGCCGCTATTCCC
TTTCCAACCATATCAGGACGTCTGGGCCAGTACGCACACCCATTTCTCTC
CCTATTCGCTATGCCGTACAGCACGCAACGCACACGGGCTGCACTCCTCC
TGTTTTATGTAAAGTATATCGTTACGTCTCACATCTCCTCACACCTGCAC
GAGGCACCAACGAATTAATATTGACCCGACAGGTTTTCAACGCAGGAGAG
GAGGCGAAGCGACGGGGTATGACCGCAAACGAGATGGCGGTGGCTGTCGA
CGAAGGCCTTCGACGCAACGGCTGGTTCGTCACGGGAAGGGTAGATGCCT
CGCTCTTCAGCGACTCATTCTTCTTCTCCGACCCGCAGGTAAGTTCCTGC
GGCAGATTGTGCCGCGAAGACTTTTTGCCGGCAGATTGTTCGCAATGCAT
TCGTAGAGATGGTTGGCGTGAGGGCATGTCAAGGCGATCTGTGATACTTG
GGCTTGCGTGCATGATTTCTGAGGCTACCAAAACCCCAGGCACAGACGCG
GAGGCAACCCCGCGTTCCTCCTGTAATGTAATACATATATACATACATAC
CGGGATATAACGGGTGCGGGATATGGAAGTTCAGCGTTTCGAATACGGCA
TAGACGCCTTTTCCTGCCACGCATTTTACGCGCGTACATGTACGACACGC
CAACGTAAATCGAGTGCCATGGCCACGCGACGCCCTTAGGTTTCTCTGAC
CGGCGTCGGCAAGTACGCCGAAGGCGTGGCGAAACTTTTCGACCAGGAAG
AGTCAAGGTGCGCACGGGCTTCCACGAACTTCCCGGGGTTCGGGGGTGGT
GGTCCTGGGGGGCGGGGGGGGGGGTGGTCCTTCTCTATGCTTCACAGCAG
TTGGCAAATTTGCACCTACTTTATAGACGAGTGTGGCATGGTGCGGGACT
GGGTGACACGTGTGCAATGAAAGGTTGACGCGCAACTGATACCGCGATGC
AGTGCGCTCTCTGCTCGGCTGCATCACCCCTTGGTCTTGGAAGCCCACGG
TGTGTGTATCGTAGTTGCCGGGGATGGGCTCGTGCGCCATTCAAAGGGAG
ACATTGCAATGCATACCACTATATTTAAGAGCAGCGCAGCTTCATTTTGC
TGCGTGCGTCAGATAAACCCTCGCACCGATGGCTGCTTCGCCCGACAACC
GTGACCTATTTCGCACGTTGGCCCGCTCGCTATCATCTTGAGCAGATGTG
ACGTTATCTCTACCGAGACCGAAGGCGAGGACGTAGTTGTCCGTTGGCGC
CTCAGCGGGAGGGTCAACCTGCCTTTCAAGCCCCCAATAAAACCCTACGT
GGTAACCACGACCTTCGAGAGAGACGCAGGCGAGTTGCGAACGTACGACC
TGAAACTCGCAGCACCGGGGCTGTCTCCAAGTTGGCTCTTGTCCTTGCTC
TCCTCTGCCGCGGATCCACTTACTACCCCAGACGTCCTGCCTTGGCGAGT
TTAACGTGTGTCCAACGCCCTGGGGTAGAGTGTGACGGGGTGGAAAATAC
ACCAGCACAACAATCAAATTCCGTGTGCTGTTTTCCGCAACGGAACGGCC
GCGCTCAGCAGACCTACCCGTTTGAGGTAACTCGTAGCGACCCGGTTGCC
GTTCTGCTTTCAGAGGGACACTGGCGGGCTTGAGGCTGTCGAAGTGCTCC
GGTGCCTGGAAGGGTTTCGTTGTTAAGACAGATGTTCGTCCTGTCCGTGT
GAGGCGATTGCTCTCGAGAGCTCCGGGGAGGTTCGAAATCGTCCTATTCC
TGAACGGTCGCACCCGCTAACCCGCACTCTCACGCACGCGCCCGATCACC
CCGCAGATGGGCTGCTATCCACACAGCGAGACGAGTTCGCGATTGCCGGG
TGGGACATCCTTCTGCACGCGGTTTTCCCCGGTCATCCTTTCGGAGCCCA
ACCCGCCCCGCCGGTCCAGCCTCGCGACGTTTGAAAACCCGCCGGTCGGT
GCATCCCATGGCGGCCAGATAGGGTGGGCCTCGTCGCTGCCGTGAGTGAT
GTGTGTACACGCTGGGGATTGCCTCGCACTCCGTGTGCCGCTTTCTTGGT
GGCGACTGCGGTGCGCTGGACGCAGTGGGTTAGGGGGTATAGTAGCGAAG
CACTGCCGTGCTGCCGTAGCTGTTCATGTTCGGAAGGGAGGGGTGAGGCA
AGAGGCAAGAGGCAAGAAGAGGAAGAGGAGGCAGGAGCGAACCGAACGAC
GCAACAGGCAGGTCATTAAGTATTTCCGGTACGAATTTGTTCCGGGTCGT
GCTGTGTACCGGTAGCTAATAGTACACCTGATATCACTGCTTTTTTGGGT
ATGCTGATGTGCTGTTGTTCTTGTTGCGCCTGGCTTGTTGTTGCTGGTGT
ACTGGGACACACCTCGCATGTTTCTAGTGGCCAAAGGGTACTGGCGGCCA
AAACGGCTACGCACTATGCCCGCCACCCCTCAACTGATTTTGCCGTGCGG
ACGCCCGTGGAGGGGTTGCGGGGTCCTAGCTTTCCGTGCATAGGTAGTCC
TCGCCCATCTATATATCTTGAGCAGATACTCGGAATATGGGCATGTAGTA
TCGAGAATCGAACACGGAGGTTTTCAAAAAGTCGGCAACACGAGCATGCA
CTACTTTCGGTGCCAAAAGGCAAAGGCCCGCGGTTGTTTTGTATCGCTCT
AGACTCTATTAATAGATGCGTCCCGCGAGTCGGGCATCGAGAAAATCTGC
TGCAGTTATGGTAAGTCTTTCGGGGTGCAAGCAAACAAGCTGTAGAAGAC
CAGATCTAGTTAACCGCCTTTCTCTCTCGTAGGGGTGCCCACGGCACGGC
ACCGCTGTTCGCGTGGTCTTGGGCGCCGAGCTGCCGATGACACACGGAGC
GTTGTGAGAGCGTGAAGCTGCCTCAGCCTGCCTGCGTGTTTAGAGCTGTG
TGTGTTGCACGTGGTCGGGGCTGGTGTGGTCGATGATGTAATCCGCGTGC
CTCTTGGATATGTTCAGCTCAGCAGGCTTTTGTATGTCAGCAGGTAAGGT
ACTATGTTGTATGCAAGAAGAGGTGGGAAGCATCGGCGGCAAGGGCGGTT
CAGGGTCCTGTGGCTTCTTTTTTGTAGATATGATGATAAGACGTGGCGGA
GTGGTTCATGCTCAGAAGGCCGTATTGACTTCACTCGCGTCCACTCTATA
CAACACATTAGTTCGCTTAGGTTGAGTAGGGGGGACCTTTGCCTATATTA
CCTCTCGAAGAAAGCACGGCCGGGTTATTATGTTATTATGTGTATTGTAG
GCTTCAAGGGGACGTGGAAATTAATGTGGAAATGTGAGAAGATTTGCCGT
ACCCCCTCGATCGGCGGCACTCTCGGAACGACTTTTGTTGCTAGCGCCCG
GTTGACACTTCCGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9:1079..6693+

>mRNA_S-dermatodea_contig9.17083.1 ID=mRNA_S-dermatodea_contig9.17083.1|Name=mRNA_S-dermatodea_contig9.17083.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1602bp|location=Sequence derived from alignment at S-dermatodea_contig9:1079..6693+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCACAGTCGCGCCACGTGTTTCCTGCTATATGTGGCGCTGCGGGCATG
CGCCGCTTTTCAGCTGCCCCAGTTGATCGTCACAAGCGCGACGTCCCAAT
CGCGACACATGTTGAACATAAGAAGTAGTAGGCCTCCTGGAACAACATGC
GCACAGAGGAGCGAATCGTCGCGGACGAGACCTAAGGCCCAGGGGGGCGA
TGGCGGCGGCGAGGAGGGCGACGGCGTGGACTACTCGGCTGATCCACTCA
CCGCATTTCTTGGAAAGTTTCTGCCCAGCGGAGAAAAGAGCACTCCACCG
CAGGCGGAGGATCTGATGCACAGTCGCGCCACGTGTTTCCTGCTATATGT
GGCGCTGCGGGCATGCGCCGCTTTTCAGCTGCCCCAGTTGATCGTCACAA
GCGCGACGTCCCAATCGCGACACATGTTGAACATAAGAAGTAGTAGGCCT
CCTGGAACAACATGCGCACAGAGGAGCGAATCGTCGCGGACGAGACCTAA
GGCCCAGGGGGGCGATGGCGGCGGCGAGGAGGGCGACGGCGTGGACTACT
CGGCTGATCCACTCACCGCATTTCTTGGAAAGTTTCTGCCCAGCGGAGAA
AAGAGCACTCCACCGCAGGCGGAGGATCTGGTTTTCAACGCAGGAGAGGA
GGCGAAGCGACGGGGTATGACCGCAAACGAGATGGCGGTGGCTGTCGACG
AAGGCCTTCGACGCAACGGCTGGTTCGTCACGGGAAGGGTAGATGCCTCG
CTCTTCAGCGACTCATTCTTCTTCTCCGACCCGCAGGTTTTCAACGCAGG
AGAGGAGGCGAAGCGACGGGGTATGACCGCAAACGAGATGGCGGTGGCTG
TCGACGAAGGCCTTCGACGCAACGGCTGGTTCGTCACGGGAAGGGTAGAT
GCCTCGCTCTTCAGCGACTCATTCTTCTTCTCCGACCCGCAGGTTTCTCT
GACCGGCGTCGGCAAGTACGCCGAAGGCGTGGCGAAACTTTTCGACCAGG
AAGAGTCAAGGTTTCTCTGACCGGCGTCGGCAAGTACGCCGAAGGCGTGG
CGAAACTTTTCGACCAGGAAGAGTCAAGATGTGACGTTATCTCTACCGAG
ACCGAAGGCGAGGACGTAGTTGTCCGTTGGCGCCTCAGCGGGAGGGTCAA
CCTGCCTTTCAAGCCCCCAATAAAACCCTACGTGGTAACCACGACCTTCG
AGAGAGACGCAGATGTGACGTTATCTCTACCGAGACCGAAGGCGAGGACG
TAGTTGTCCGTTGGCGCCTCAGCGGGAGGGTCAACCTGCCTTTCAAGCCC
CCAATAAAACCCTACGTGGTAACCACGACCTTCGAGAGAGACGCAGATGG
GCTGCTATCCACACAGCGAGACGAGTTCGCGATTGCCGGGTGGGACATCC
TTCTGCACGCGGTTTTCCCCGGTCATCCTTTCGGAGCCCAACCCGCCCCG
CCGGTCCAGCCTCGCGACGTTTGAATGGGCTGCTATCCACACAGCGAGAC
GAGTTCGCGATTGCCGGGTGGGACATCCTTCTGCACGCGGTTTTCCCCGG
TCATCCTTTCGGAGCCCAACCCGCCCCGCCGGTCCAGCCTCGCGACGTTT
GA
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