mRNA_S-dermatodea_contig8995.17082.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8995.17082.1
Unique NamemRNA_S-dermatodea_contig8995.17082.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8995.17082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8995contigS-dermatodea_contig8995:2081..4526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size207
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8995.17082.1prot_S-dermatodea_contig8995.17082.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8995 2081..4367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925378.0104156-CDS-S-dermatodea_contig8995:2080..21361622925378.0104156-CDS-S-dermatodea_contig8995:2080..2136Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8995 2081..2136 +
1694079892.5362256-CDS-S-dermatodea_contig8995:2080..21361694079892.5362256-CDS-S-dermatodea_contig8995:2080..2136Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8995 2081..2136 +
1622925378.0228212-CDS-S-dermatodea_contig8995:4216..43671622925378.0228212-CDS-S-dermatodea_contig8995:4216..4367Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8995 4217..4367 +
1694079892.5589757-CDS-S-dermatodea_contig8995:4216..43671694079892.5589757-CDS-S-dermatodea_contig8995:4216..4367Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8995 4217..4367 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925378.0371673-UTR-S-dermatodea_contig8995:4367..45261622925378.0371673-UTR-S-dermatodea_contig8995:4367..4526Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8995 4368..4526 +
1694079892.5749862-UTR-S-dermatodea_contig8995:4367..45261694079892.5749862-UTR-S-dermatodea_contig8995:4367..4526Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8995 4368..4526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8995.17082.1

>prot_S-dermatodea_contig8995.17082.1 ID=prot_S-dermatodea_contig8995.17082.1|Name=mRNA_S-dermatodea_contig8995.17082.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=69bp
SIVEAAADGKGYITPEDITRVLANISEGKTVLTPVEAGNICATWGEPEAT
TPSMSKHAFLRLLETRSN*
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mRNA from alignment at S-dermatodea_contig8995:2081..4526+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8995.17082.1 ID=mRNA_S-dermatodea_contig8995.17082.1|Name=mRNA_S-dermatodea_contig8995.17082.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2446bp|location=Sequence derived from alignment at S-dermatodea_contig8995:2081..4526+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCATCGTTGAGGCTGCGGCGGACGGAAAAGGGTACATCACGCCGGAGGA
CATCACGTGAGTACCTTTTTTGGTCCTCCTTGTTTTTTTCTCTTTTCCTA
ACTCACTCTTCCGAGGAGTAAAGCCTTACGTATCCAGGGCCCTTTTACAT
GGCCGGCTTCGAAATCACGCCCAAGTTTCAGCTCTATGGCGCATGATGTC
GAAGTAAAAGACGCTTTGTTTGTAAAGCGTTGGCCGGAGCATATACATAA
AAAAGAAAAAATCAAACGATGGTGTTGCGAGGCCAGGCCATAATATTTTC
TGTTTTTTTTTTAATGTTTGGTTGGGGTATTTATTCTCTTTGGGTATATA
TATACTATTACAGCGGTAGATAGTATTCAGGAGCCAAACATGTGCCAAAC
CGAATGCCCAACCTTATACACCATAAATCTGTTTTGTCTGGCCTTGCAAC
GTCTATAGTATACAGTATATAGTATATGGTATATATCACGGAGGTACACT
ATAATCAAGTAATCAGGGCCAAATCTCATGACCATGAATACTAGTACAAT
ACCCACCTATTCCGACTATGAGTACCCAAACAAGAAACACCTCATGAAAA
ACAAAAAAGACACGAGATATATTGCCATACATAAGGACATCGACCTTGAA
ATCTCGATAATTCCAGCCAATTTAGACTTTTCTAGGTTGAGACTTGTGGC
AAATATATAGGTCTAGTCCCCCGTTATAGTAAATAATAGTATCTAGTATA
GTGTATATAGTATAGTATACCATACTGTAGTATATGCGATATTCCGGCCT
GAAATAGTCAGTCAACGTTCAAAAACAAAAACCAGGCGTCCTCACAGTCC
CTGCAATTACACATGCCTTTTCACAGTCTTTTCACAGTACCAGCGTGTTA
TGGTGCTACGGTGTCGATCTCCGTAGAGCGTTGAGTTATGATATCCGTAG
AAATATATATGGCGTAGGAGTTCCACAGGTGTAGCATGTAGCATGCATGA
CTACGCGTGTGTGTGTGAGGTCCCCAGCAGGGCTCACACACCCAGCGAGC
GCTCTCCTCTCTAAGAGCTGTCTGAGAACCAATAACAAGTGAGTGTGGAC
TACAAGCCTAACGAGCGTTACCTATTAATAGCTTAATAGCATCGTGTCAC
ACAACAACCCCAAGAAGGACCTCTCTTTATAACAAGCGCCAGTGCCGGTT
TTCGGTACGGTACGGCACTGCTGTAAGTTTGTTTTTCTCTCAACCGCCAC
TGGTTCGGCACTGTCATGAGGCCTCCTGCCGCAAGGCAGGTCCTCGCCAG
GTTAGCTGGACTCCTGGTGCGTGTCTGTCCTAAAGTTGACCCTCAACGAC
ACGCTCCAGGCCTAACCCTTCTACTCGCTACGCTTGCTTCGCACTACCTT
TCGCTAGGGTGGGCGGGATGGCGAAAAACTTTAATGCTCTCGCCCCCTTT
GTTGGTGGGCTTCGTGGCGCGCTAAGAACTGAACCCTTGGGGGGAGCCAA
TCGGGTATCGTTCTTATCTTCCCGGTCATATCCAATTGGTAGTGGAACTC
CCTAATTGCGCCGACCGGTTGCTTTGATTACTATTATCATAATAGTTTAT
TTTTTCTCCCAACCGACACTGTGAGGACCCCTGAAAAAAAAATCAAGGCT
CGATTACGCTTTTGGCCAGGAATTTGCTCCTGATTACTTGATTACTGTGT
ACTTCCGTTATGGTGAGTAGCCAAGGCTACGCCAGAGAGGTGTGGGTTGG
CAGGCGAAGTAGATGTGGGGGTTTGGAAAATCAGGCCACTACTCTGTAAA
GGACTACTACCAGCGATTCAAAATGTAGTCTCTAAAATTGTAAAGCGGGC
TGGTAATTCGGTACCAAATCGATACAAACTCTGAATACTAAGTGTGTATA
GCTAAACCAGTAAGACTATGAGAGACTCAAACTTTCAAAAGTGTATAGGT
ATTACAGACTGCACTCTTCTCCGTGTATCGGCCTCAATTGTTTGTATCCA
AGGCGCCATTCTAAATTCTAAAGAAGCAAACGTGCAAAGTGCTGTATCAA
TATTAATTTGATAAATATTCGATCCTGATTGCTACTCTTAATACTCTGTG
TGCCTCCCTAATACACACCATATAAAATGTGTTCAGGCGTGTGCTGGCTA
ATATCTCCGAAGGAAAGACTGTGCTCACTCCCGTAGAAGCTGGAAACATC
TGCGCCACATGGGGAGAACCGGAGGCCACCACCCCGTCCATGTCGAAGCA
CGCCTTCCTTCGCCTGTTGGAAACCCGGTCGAATTGATCGCATAAAACGC
GCCTCAAGTGACGGCTTGGGAGCTCCATCTAGCACTGAACAAGGGACTCG
CTTACGTGTGTACGTGTACGATTGGGAACTGCAACAGCAAGCACGTAGAG
GAGGGAGACAACAGAATGGAGACAGTGTATGCGTGCTTGCCTCCTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig8995:2081..4526+

>mRNA_S-dermatodea_contig8995.17082.1 ID=mRNA_S-dermatodea_contig8995.17082.1|Name=mRNA_S-dermatodea_contig8995.17082.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at S-dermatodea_contig8995:2081..4526+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCATCGTTGAGGCTGCGGCGGACGGAAAAGGGTACATCACGCCGGAGGA
CATCACTCCATCGTTGAGGCTGCGGCGGACGGAAAAGGGTACATCACGCC
GGAGGACATCACGCGTGTGCTGGCTAATATCTCCGAAGGAAAGACTGTGC
TCACTCCCGTAGAAGCTGGAAACATCTGCGCCACATGGGGAGAACCGGAG
GCCACCACCCCGTCCATGTCGAAGCACGCCTTCCTTCGCCTGTTGGAAAC
CCGGTCGAATTGAGCGTGTGCTGGCTAATATCTCCGAAGGAAAGACTGTG
CTCACTCCCGTAGAAGCTGGAAACATCTGCGCCACATGGGGAGAACCGGA
GGCCACCACCCCGTCCATGTCGAAGCACGCCTTCCTTCGCCTGTTGGAAA
CCCGGTCGAATTGA
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