mRNA_S-dermatodea_contig89924.17079.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig89924.17079.1
Unique NamemRNA_S-dermatodea_contig89924.17079.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig89924.17079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig89924contigS-dermatodea_contig89924:88..554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size468
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925377.7935987-UTR-S-dermatodea_contig89924:87..1731622925377.7935987-UTR-S-dermatodea_contig89924:87..173Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig89924 88..173 +
1694079892.3901002-UTR-S-dermatodea_contig89924:87..1731694079892.3901002-UTR-S-dermatodea_contig89924:87..173Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig89924 88..173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925377.8084195-CDS-S-dermatodea_contig89924:173..5541622925377.8084195-CDS-S-dermatodea_contig89924:173..554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89924 174..554 +
1694079892.4032083-CDS-S-dermatodea_contig89924:173..5541694079892.4032083-CDS-S-dermatodea_contig89924:173..554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89924 174..554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig89924.17079.1prot_S-dermatodea_contig89924.17079.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig89924 174..554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig89924.17079.1

>prot_S-dermatodea_contig89924.17079.1 ID=prot_S-dermatodea_contig89924.17079.1|Name=mRNA_S-dermatodea_contig89924.17079.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=127bp
MVFTVVKLTLLHQHNEKRIKILSVPLAHNKSVCDSVVESSTSLPRILDRR
VSSSALPLAAPVVFSVSGVKRSADFLASTSSRPVSVSKRGAVRRALPNRS
RVSSKIAADSVESSRALETNKIHKKRA
back to top

mRNA from alignment at S-dermatodea_contig89924:88..554+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig89924.17079.1 ID=mRNA_S-dermatodea_contig89924.17079.1|Name=mRNA_S-dermatodea_contig89924.17079.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=467bp|location=Sequence derived from alignment at S-dermatodea_contig89924:88..554+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGTGTCTCTTCTTCCAAGTGATGATGTATGATAGACCAAAACCCGTCTGA
AATCCTCACGTCACCAGTACGTTGGTGCAGCAATCTATGGTTTTTACTGT
AGTCAAACTGACACTATTACACCAGCACAACGAGAAGAGAATTAAAATTC
TCTCCGTACCGCTTGCGCACAATAAATCGGTCTGCGATTCTGTTGTTGAA
AGTAGCACTAGTTTGCCTCGTATTTTAGACCGTCGGGTCTCGTCGTCAGC
GCTGCCATTGGCCGCGCCTGTTGTTTTTTCTGTTTCTGGAGTTAAGCGTT
CCGCTGATTTTTTGGCTAGTACTTCGTCACGTCCCGTGAGCGTGTCTAAA
CGAGGTGCAGTACGTAGAGCGCTTCCCAACCGATCTCGTGTGTCGAGTAA
GATTGCGGCGGATTCCGTCGAGTCGAGTAGGGCTTTGGAAACTAATAAAA
TACACAAAAAACGAGCG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig89924:88..554+

>mRNA_S-dermatodea_contig89924.17079.1 ID=mRNA_S-dermatodea_contig89924.17079.1|Name=mRNA_S-dermatodea_contig89924.17079.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at S-dermatodea_contig89924:88..554+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTTTTACTGTAGTCAAACTGACACTATTACACCAGCACAACGAGAA
GAGAATTAAAATTCTCTCCGTACCGCTTGCGCACAATAAATCGGTCTGCG
ATTCTGTTGTTGAAAGTAGCACTAGTTTGCCTCGTATTTTAGACCGTCGG
GTCTCGTCGTCAGCGCTGCCATTGGCCGCGCCTGTTGTTTTTTCTGTTTC
TGGAGTTAAGCGTTCCGCTGATTTTTTGGCTAGTACTTCGTCACGTCCCG
TGAGCGTGTCTAAACGAGGTGCAGTACGTAGAGCGCTTCCCAACCGATCT
CGTGTGTCGAGTAAGATTGCGGCGGATTCCGTCGAGTCGAGTAGGGCTTT
GGAAACTAATAAAATACACAAAAAACGAGCGATGGTTTTTACTGTAGTCA
AACTGACACTATTACACCAGCACAACGAGAAGAGAATTAAAATTCTCTCC
GTACCGCTTGCGCACAATAAATCGGTCTGCGATTCTGTTGTTGAAAGTAG
CACTAGTTTGCCTCGTATTTTAGACCGTCGGGTCTCGTCGTCAGCGCTGC
CATTGGCCGCGCCTGTTGTTTTTTCTGTTTCTGGAGTTAAGCGTTCCGCT
GATTTTTTGGCTAGTACTTCGTCACGTCCCGTGAGCGTGTCTAAACGAGG
TGCAGTACGTAGAGCGCTTCCCAACCGATCTCGTGTGTCGAGTAAGATTG
CGGCGGATTCCGTCGAGTCGAGTAGGGCTTTGGAAACTAATAAAATACAC
AAAAAACGAGCG
back to top