mRNA_S-dermatodea_contig899.17072.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig899.17072.1
Unique NamemRNA_S-dermatodea_contig899.17072.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig899.17072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig899contigS-dermatodea_contig899:8737..10448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size349
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig899.17072.1prot_S-dermatodea_contig899.17072.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig899 8747..10448 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925377.0544322-UTR-S-dermatodea_contig899:8736..87461622925377.0544322-UTR-S-dermatodea_contig899:8736..8746Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig899 8737..8746 +
1694079891.8902235-UTR-S-dermatodea_contig899:8736..87461694079891.8902235-UTR-S-dermatodea_contig899:8736..8746Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig899 8737..8746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925377.0669081-CDS-S-dermatodea_contig899:8746..88791622925377.0669081-CDS-S-dermatodea_contig899:8746..8879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig899 8747..8879 +
1694079891.9006748-CDS-S-dermatodea_contig899:8746..88791694079891.9006748-CDS-S-dermatodea_contig899:8746..8879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig899 8747..8879 +
1622925377.0808668-CDS-S-dermatodea_contig899:10242..104481622925377.0808668-CDS-S-dermatodea_contig899:10242..10448Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig899 10243..10448 +
1694079891.9175467-CDS-S-dermatodea_contig899:10242..104481694079891.9175467-CDS-S-dermatodea_contig899:10242..10448Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig899 10243..10448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig899.17072.1

>prot_S-dermatodea_contig899.17072.1 ID=prot_S-dermatodea_contig899.17072.1|Name=mRNA_S-dermatodea_contig899.17072.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=113bp
MEAPRAPKLFNNRSRDYVSRRLWSRAVRVGLVGVLVSASSSASVAGGSMP
GAKPLPMVATPGFASAPPFTLTRRRLRKSCCRRGSCFAFSGGGAGVGGCC
RRRGRWGRAPRTG
back to top

mRNA from alignment at S-dermatodea_contig899:8737..10448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig899.17072.1 ID=mRNA_S-dermatodea_contig899.17072.1|Name=mRNA_S-dermatodea_contig899.17072.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1712bp|location=Sequence derived from alignment at S-dermatodea_contig899:8737..10448+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAGCAGGGCATGGAGGCCCCGAGGGCGCCCAAACTGTTCAACAATAGAA
GTAGAGACTATGTGTCTCGGAGATTATGGTCTCGAGCTGTGCGAGTCGGG
CTTGTGGGGGTGCTGGTATCGGCGTCTTCCTCTGCAAGTGTTGGTGAGAG
CTTTGGCATCGCATGTGCAAAACCCGAGGTATCCGGGGCGAGAGCCTGCA
CAGCAGCGTGCAAGCAACATGGAAGGAACGATACTCTATCCGGGATATGA
TGTAGTGGCTACTCCTGCCCTTTCCACTGCGGATGGGGTCCGGATAAGGC
ATATTGGGTGGAAATGCCCTAAACAAGATACATAACATGCATGCATTGTA
CATGCACACATACATGTGTCTGTACAAAAGCAGTAACACTCCTGTGACAA
CAGCAGTATCATACAGAGAGTAGGCCTCTATTGAAGAGACGCTATGTACG
TACTGTTGCTGTAGAGCCAGCCAGAGGTTGATGGTGTTCGGTGCAGCACC
CGAGGCATAGTGCCGGCCCCACAGGCCCGTTGTAGATTCTCCTGGATCTC
GCCTACCGTGAGAAGTCAAACGGCGAGAGGGTTGGATTCGGTCTTTGGCT
GCACTTCAACTGGCATTACGAAACAAGCAGCAGTAGTTTCTCCGTCCGTC
ACTGCTGTCACATGTCACATGCCCGTGGATGGTATGATAGTGTTGGAATG
CGCCGTCGAGGCAAGGGGCGTCGAGGTAGGCCAGTTGCCACAAAAAACTG
CTTAGGTATCCGTGCCGTCTGGGGAGTCGGAGCGGGTTCGACACAAGCCA
ATCCAAGTGACTTTCGGCGCCGTTGCAGTGTTTCAGTTGCCGTAGGCCCA
GATAGATATGTACGAATCGGGTCGAATATACAATACACAATACCAGTAGT
ACAGCAATATATAACACATGCACTTGTACAGCTGTAGCGTAGAGCTCTAT
TATAGTACAGCAGTCGTAGAGCTCTGTACCTCCAACAGCCAAGCCTACAC
CCTTTTGAGCTGGGCGTTACACCGGTATTATGCCGCATCGAACCAAAGCG
TACAGCAGTGTTGGCAGGTCGACGAGATGGACGATCGTCTCGACGCATCT
GGTAATACTGCTCTTTGGGCTTGTTGGCTTGGTCCCAAAACTCAAAATTG
GAGAAAATGTGTTCCTCTAATCGACTGCTTGTTGAATTGAGTTCATCAAC
CGTTACATCGGCAGTACCGCTCACACACAGGACAAGGCCATGAAAACTAA
ATATCCACTGAGAAATAGACTCCATCAAATTAGAACCTTGTGGCCAAATT
AAAGATAATTGTATTATACTGTGTGTGTAGGCTGTGTATCCGATCGTATG
CGTACTTCTGCCCCAAAGTACACGTACACTTGCACTCACACTCCGTACTA
CAATATAATCTCCGCCTTTGGTATACAGTTTGGCAACTCTTTATTCCGCC
GCTTACACAACACCCCCGGCAACCACACCGCACCATTTGCTTCGCACGAC
TCGCAGCAGGGGGATCTATGCCCGGCGCGAAACCACTGCCAATGGTGGCG
ACCCCCGGCTTTGCCTCCGCCCCGCCGTTCACTCTTACCCGACGGCGCTT
GAGGAAATCTTGCTGTCGTCGGGGTAGCTGTTTTGCGTTCAGCGGCGGGG
GGGCCGGTGTTGGTGGGTGCTGTCGGCGTAGAGGGCGATGGGGACGGGCT
CCGAGAACGGGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig899:8737..10448+

>mRNA_S-dermatodea_contig899.17072.1 ID=mRNA_S-dermatodea_contig899.17072.1|Name=mRNA_S-dermatodea_contig899.17072.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig899:8737..10448+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGGCCCCGAGGGCGCCCAAACTGTTCAACAATAGAAGTAGAGACTA
TGTGTCTCGGAGATTATGGTCTCGAGCTGTGCGAGTCGGGCTTGTGGGGG
TGCTGGTATCGGCGTCTTCCTCTGCAAGTGTTGATGGAGGCCCCGAGGGC
GCCCAAACTGTTCAACAATAGAAGTAGAGACTATGTGTCTCGGAGATTAT
GGTCTCGAGCTGTGCGAGTCGGGCTTGTGGGGGTGCTGGTATCGGCGTCT
TCCTCTGCAAGTGTTGCAGGGGGATCTATGCCCGGCGCGAAACCACTGCC
AATGGTGGCGACCCCCGGCTTTGCCTCCGCCCCGCCGTTCACTCTTACCC
GACGGCGCTTGAGGAAATCTTGCTGTCGTCGGGGTAGCTGTTTTGCGTTC
AGCGGCGGGGGGGCCGGTGTTGGTGGGTGCTGTCGGCGTAGAGGGCGATG
GGGACGGGCTCCGAGAACGGGCCAGGGGGATCTATGCCCGGCGCGAAACC
ACTGCCAATGGTGGCGACCCCCGGCTTTGCCTCCGCCCCGCCGTTCACTC
TTACCCGACGGCGCTTGAGGAAATCTTGCTGTCGTCGGGGTAGCTGTTTT
GCGTTCAGCGGCGGGGGGGCCGGTGTTGGTGGGTGCTGTCGGCGTAGAGG
GCGATGGGGACGGGCTCCGAGAACGGGC
back to top