mRNA_S-dermatodea_contig8985.17064.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8985.17064.1
Unique NamemRNA_S-dermatodea_contig8985.17064.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8985.17064.1 vs. uniprot
Match: D7FXX6_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX6_ECTSI)

HSP 1 Score: 287 bits (734), Expect = 2.380e-93
Identity = 138/181 (76.24%), Postives = 148/181 (81.77%), Query Frame = 1 
Query:  118 MSLTCAKRLRKEMHKLQACPPDQDIALHADEEDIRQWRAHIRGPPDTPYAGGVKMRLCLSGFNRTFLPPTPETGVYELKITVGQQYPMVPPSMHFVTKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDLRAFNSMARLYKEELASKRWPPE 660
            MSLT AKRLRKEMHKLQ  PPD+DI + ADE+DIRQWRA+IRGPPDTP+AGG+                      YELKITVGQQYPMVPP M FVTKVFHPNVHFNTGEICLNILKK+WSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGD+RAF S+ARLY EELASK WP +
Sbjct:    1 MSLTSAKRLRKEMHKLQTSPPDEDIRMSADEDDIRQWRAYIRGPPDTPFAGGI----------------------YELKITVGQQYPMVPPCMRFVTKVFHPNVHFNTGEICLNILKKDWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSVARLYNEELASKDWPAD 159
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BLAST of mRNA_S-dermatodea_contig8985.17064.1 vs. uniprot
Match: A0A835Z5T9_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5T9_9STRA)

HSP 1 Score: 202 bits (513), Expect = 4.050e-60
Identity = 98/179 (54.75%), Postives = 120/179 (67.04%), Query Frame = 1 
Query:  118 MSLTCAKRLRKEMHKLQACPPDQDIALHADEEDIRQWRAHIRGPPDTPYAGGVKMRLCLSGFNRTFLPPTPETGVYELKITVGQQYPMVPPSMHFVTKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDLRAFNSMARLYKEELASKRWP 654
            MS+ C KRLR E+  +     D DI L + E DIR+W+AHIRGPP TPY GGV                      +EL +TVG QYP+VPP++ FVT+VFHPNVHF TG ICL++L + W+PAW LQ  CRA+LALL+ P ADSPLNCDAGNM+RAGD  AF SMAR+Y  E A++  P
Sbjct:    1 MSMACFKRLRMEIKSMS---DDPDIFLESSESDIRRWKAHIRGPPGTPYEGGV----------------------FELDLTVGMQYPLVPPAVTFVTRVFHPNVHFTTGAICLDVLSRAWTPAWGLQATCRALLALLSDPAADSPLNCDAGNMIRAGDACAFESMARMYTLEHAARDMP 154
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BLAST of mRNA_S-dermatodea_contig8985.17064.1 vs. uniprot
Match: A0A6S9GG99_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GG99_HETAK)

HSP 1 Score: 201 bits (511), Expect = 8.880e-60
Identity = 97/173 (56.07%), Postives = 123/173 (71.10%), Query Frame = 1 
Query:  136 KRLRKEMHKLQACPPDQDIALHADEEDIRQWRAHIRGPPDTPYAGGVKMRLCLSGFNRTFLPPTPETGVYELKITVGQQYPMVPPSMHFVTKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDLRAFNSMARLYKEELASKRWP 654
            KRL+KE+  L+    D DI L+ + E++R+ +  IRGPPDTP+AGG+                      YELKI +GQQYPMVPP+M FVTK+FHPN+HF+TGEICL+ILKKEWSPAW LQ ACRAI+A+++ P ADSPLNCDAGNMVRA D+RA+ S+A +Y+ E A    P
Sbjct:    5 KRLKKELENLKKSD-DNDIKLYENPENMRKIQGFIRGPPDTPFAGGI----------------------YELKIDIGQQYPMVPPTMEFVTKIFHPNIHFDTGEICLDILKKEWSPAWGLQAACRAIIAIMSDPAADSPLNCDAGNMVRAEDMRAYGSIASMYRIEHALTEMP 154
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BLAST of mRNA_S-dermatodea_contig8985.17064.1 vs. uniprot
Match: A0A7S2UYB8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYB8_9STRA)

HSP 1 Score: 199 bits (506), Expect = 4.500e-59
Identity = 98/179 (54.75%), Postives = 123/179 (68.72%), Query Frame = 1 
Query:  118 MSLTCAKRLRKEMHKLQACPPDQDIALHADEEDIRQWRAHIRGPPDTPYAGGVKMRLCLSGFNRTFLPPTPETGVYELKITVGQQYPMVPPSMHFVTKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDLRAFNSMARLYKEELASKRWP 654
            M+L  +KRLRKE+  L+  P D DI L  D  +IR  +  IRGPP TP+                      E G+YEL+I + Q YPMVPPSM FVTK+FHPNVHF+TGEICL+ILK EWSPAW LQ ACRA++AL++ P ADSPLNCDAGNM+RAGD+RA++++A +Y+ E A K  P
Sbjct:    1 MALASSKRLRKEIQNLKKSP-DSDIFLIPDPNNIRSIQGFIRGPPSTPF----------------------ENGIYELQIDISQNYPMVPPSMKFVTKIFHPNVHFDTGEICLDILKSEWSPAWGLQPACRAVIALMSDPAADSPLNCDAGNMIRAGDMRAYHAVASMYQIEYALKSVP 156
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BLAST of mRNA_S-dermatodea_contig8985.17064.1 vs. uniprot
Match: A0A448YY37_9STRA (UBC core domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY37_9STRA)

HSP 1 Score: 192 bits (488), Expect = 3.210e-56
Identity = 96/181 (53.04%), Postives = 120/181 (66.30%), Query Frame = 1 
Query:  118 MSLTCAKRLRKEMHKLQACP-PDQDIALHADEEDIRQWRAHIRGPPDTPYAGGVKMRLCLSGFNRTFLPPTPETGVYELKITVGQQYPMVPPSMHFVTKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDLRAFNSMARLYKEELAS-KRWP 654
            ++L  AKRLRKE+  L+    PD DI L  D  +I QW A +RGP DTPY+GGV                      ++L I  G  YP+ PPS+ FVT+VFHPNVHF TG++CL+ILKKEWSPAW +Q ACRAILALL+ P+ADSPLNCDAGNM+R GD+ A+N+ AR++  E A    WP
Sbjct:    3 LNLAAAKRLRKELQNLKRTKEPDPDIYLIPDGNNILQWTALLRGPSDTPYSGGV----------------------FQLAIDCGADYPLAPPSITFVTRVFHPNVHFRTGDVCLDILKKEWSPAWGVQAACRAILALLSDPDADSPLNCDAGNMIRGGDMLAYNTTARMFTVENAMFLAWP 161
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BLAST of mRNA_S-dermatodea_contig8985.17064.1 vs. uniprot
Match: A0A1E7FW51_9STRA (Ubiquitin-conjugating enzyme n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW51_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.350e-53
Identity = 93/180 (51.67%), Postives = 118/180 (65.56%), Query Frame = 1 
Query:  121 SLTCAKRLRKEMHKLQ-ACPPDQDIALHADEEDIRQWRAHIRGPPDTPYAGGVKMRLCLSGFNRTFLPPTPETGVYELKITVGQQYPMVPPSMHFVTKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDLRAFNSMARLYKEELAS-KRWP 654
            +L  AKRLRKE+  L+ A   D DI L  D ++I +W A ++GP DTPYA GV                      ++L I  G  YP+ PP + F+TK+FHPNVHF TG++CL+ILKKEWSPAW +Q ACRAILALL+ P+ADSPLNCDAGNM+R GD+ A+N+ AR+Y  E A    WP
Sbjct:    4 NLAAAKRLRKELQNLERAKEQDPDIFLIPDGDNILRWTALLKGPCDTPYAEGV----------------------FQLAIDCGSDYPLSPPKIKFLTKIFHPNVHFRTGDVCLDILKKEWSPAWGVQAACRAILALLSDPDADSPLNCDAGNMIRGGDMLAYNTTARMYSVENAMFLAWP 161
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BLAST of mRNA_S-dermatodea_contig8985.17064.1 vs. uniprot
Match: A0A7S2SP60_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP60_9STRA)

HSP 1 Score: 185 bits (470), Expect = 2.110e-53
Identity = 93/173 (53.76%), Postives = 117/173 (67.63%), Query Frame = 1 
Query:  136 KRLRKEMHKLQACPPDQDIALHADEEDIRQWRAHIRGPPDTPYAGGVKMRLCLSGFNRTFLPPTPETGVYELKITVGQQYPMVPPSMHFVTKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDLRAFNSMARLYKEELASKRWP 654
            KRLRKE+  ++    D++I L  +E++IRQW+A+IRGPP T Y G V                      Y + I VG +YP+ PP + F+TKVFHPNV+F+TGEICL+ILK+ WSPAWSLQ ACRAI+ALLA P+ DSP NCDAGNM+RAGDL AF S+ RLY EE     +P
Sbjct:   30 KRLRKELSSIRK-ERDEEIELQPNEDNIRQWQAYIRGPPGTAYQGKV----------------------YCMSIHVGAEYPLEPPKVTFLTKVFHPNVNFSTGEICLDILKRNWSPAWSLQAACRAIIALLADPDVDSPWNCDAGNMIRAGDLVAFESIVRLYAEEHGLDDFP 179
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BLAST of mRNA_S-dermatodea_contig8985.17064.1 vs. uniprot
Match: A0A7S1VE29_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VE29_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.060e-52
Identity = 92/183 (50.27%), Postives = 116/183 (63.39%), Query Frame = 1 
Query:  124 LTCAKRLRKEMHKLQACPPD-QDIALHAD--EEDIRQWRAHIRGPPDTPYAGGVKMRLCLSGFNRTFLPPTPETGVYELKITVGQQYPMVPPSMHFVTKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDLRAFNSMARLYKEELAS-KRWPPE 660
            L  AKRLRKE+  L+    +  D+ L     EE I  W A ++GPPDT Y GGV                      ++L I  G  YP+VPP++ F+TK+FHPN+HF TG++CL+ILKKEWSPAW LQ ACRA+LALL+ P+ADSPLNCDAGNMVR+ D+ A+ S AR+Y  E A    WP E
Sbjct:    6 LAAAKRLRKELQNLEKSKHEVDDVFLRPTNPEESILMWTALLKGPPDTAYEGGV----------------------FQLNIRCGSDYPLVPPNIKFMTKIFHPNIHFKTGDVCLDILKKEWSPAWGLQAACRAVLALLSDPDADSPLNCDAGNMVRSNDMLAYRSTARMYTVENAMFLEWPKE 166
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BLAST of mRNA_S-dermatodea_contig8985.17064.1 vs. uniprot
Match: A0A1Y1I4V8_KLENI (Ubiquitin-conjugating enzyme n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I4V8_KLENI)

HSP 1 Score: 182 bits (462), Expect = 1.570e-52
Identity = 87/174 (50.00%), Postives = 111/174 (63.79%), Query Frame = 1 
Query:  139 RLRKEMHKLQACPPDQDIALHADEEDIRQWRAHIRGPPDTPYAGGVKMRLCLSGFNRTFLPPTPETGVYELKITVGQQYPMVPPSMHFVTKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDLRAFNSMARLYKEELASKRWPPE 660
            RL KE  ++Q    D DI L  DE +I +W A+I+GP +TPY GG                       ++L I V + YP+ PP +   TK+FHPNVHF TGEICL+ILK  WSPAW+LQ  CRA++ALL+HPE DSPLNCD GN++RAGDLR + SMAR+Y +  AS+  PP 
Sbjct:    6 RLFKEFKEVQRDKKDTDIVLFPDESNIYRWTAYIKGPAETPYDGGT----------------------FQLSINVPENYPLTPPVVRCNTKIFHPNVHFKTGEICLDILKTAWSPAWTLQSVCRAVIALLSHPEPDSPLNCDCGNLLRAGDLRGYKSMARMYTKLAASQVKPPS 157
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BLAST of mRNA_S-dermatodea_contig8985.17064.1 vs. uniprot
Match: A0A1Z5JZI5_FISSO (Peroxin-4 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZI5_FISSO)

HSP 1 Score: 182 bits (463), Expect = 1.690e-52
Identity = 93/180 (51.67%), Postives = 112/180 (62.22%), Query Frame = 1 
Query:  121 SLTCAKRLRKEMHKLQACPPDQDIALHADEEDIRQWRAHIRGPPDTPYAGGVKMRLCLSGFNRTFLPPTPETGVYELKITVGQQYPMVPPSMHFVTKVFHPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAG-DLRAFNSMARLYKEELAS-KRWP 654
            SL  AKRLRKE+  LQ  P D DI L  + +++ QW+A IRGP +TPY GG                       +EL I  G  YP+ PPS+ FVTK+FHPNVHF TG+ICL+ILKKEWSPAW LQ ACRA+LALL+ P+ D PLNCDAGNM+R   D+ A+   A  Y  E A    WP
Sbjct:    5 SLAAAKRLRKELQVLQKSPDDADILLEHNPDNLLQWKAWIRGPVETPYEGGD----------------------FELDIRCGTDYPLAPPSIKFVTKIFHPNVHFRTGDICLDILKKEWSPAWGLQAACRAVLALLSDPDPDRPLNCDAGNMLRGNADVMAYEDTAAFYTVENAQFLSWP 162
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8985.17064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXX6_ECTSI2.380e-9376.24UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A835Z5T9_9STRA4.050e-6054.75Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A6S9GG99_HETAK8.880e-6056.07Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UYB8_9STRA4.500e-5954.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A448YY37_9STRA3.210e-5653.04UBC core domain-containing protein n=1 Tax=Pseudo-... [more]
A0A1E7FW51_9STRA1.350e-5351.67Ubiquitin-conjugating enzyme n=1 Tax=Fragilariopsi... [more]
A0A7S2SP60_9STRA2.110e-5353.76Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1VE29_9STRA1.060e-5250.27Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1Y1I4V8_KLENI1.570e-5250.00Ubiquitin-conjugating enzyme n=1 Tax=Klebsormidium... [more]
A0A1Z5JZI5_FISSO1.690e-5251.67Peroxin-4 n=2 Tax=Fistulifera solaris TaxID=151956... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8985contigS-dermatodea_contig8985:3106..8668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.5
Seed ortholog evalue2.2e-75
Seed eggNOG ortholog2880.D7FXX6
KEGG koko:K10689
GOsGO:0000151,GO:0000165,GO:0000187,GO:0000209,GO:0000724,GO:0000725,GO:0000726,GO:0000729,GO:0001650,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0002768,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006355,GO:0006464,GO:0006468,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007254,GO:0008150,GO:0008152,GO:0009889,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010638,GO:0010646,GO:0010647,GO:0016043,GO:0016310,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030522,GO:0031056,GO:0031058,GO:0031098,GO:0031323,GO:0031325,GO:0031326,GO:0031347,GO:0031349,GO:0031371,GO:0031372,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031625,GO:0031974,GO:0031981,GO:0032147,GO:0032182,GO:0032268,GO:0032270,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033182,GO:0033554,GO:0033674,GO:0034097,GO:0034641,GO:0035370,GO:0035556,GO:0035872,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043122,GO:0043123,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045088,GO:0045089,GO:0045739,GO:0045859,GO:0045860,GO:0045935,GO:0045937,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051052,GO:0051054,GO:0051090,GO:0051091,GO:0051092,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051276,GO:0051338,GO:0051347,GO:0051403,GO:0051438,GO:0051443,GO:0051716,GO:0060255,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065007,GO:0065009,GO:0070013,GO:0070423,GO:0070498,GO:0070534,GO:0070555,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902275,GO:1902494,GO:1902531,GO:1902533,GO:1903320,GO:1903322,GO:1903506,GO:1905269,GO:1990234,GO:2000112,GO:2001020,GO:2001022,GO:2001141,GO:2001252
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0417@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons6
Model size1289
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8985.17064.1prot_S-dermatodea_contig8985.17064.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8985 3729..8551 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925376.611765-UTR-S-dermatodea_contig8985:3105..37281622925376.611765-UTR-S-dermatodea_contig8985:3105..3728Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8985 3106..3728 -
1694079891.6105862-UTR-S-dermatodea_contig8985:3105..37281694079891.6105862-UTR-S-dermatodea_contig8985:3105..3728Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8985 3106..3728 -
1622925376.7199898-UTR-S-dermatodea_contig8985:8551..86681622925376.7199898-UTR-S-dermatodea_contig8985:8551..8668Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8985 8552..8668 -
1694079891.6764748-UTR-S-dermatodea_contig8985:8551..86681694079891.6764748-UTR-S-dermatodea_contig8985:8551..8668Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8985 8552..8668 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925376.629961-CDS-S-dermatodea_contig8985:3728..38261622925376.629961-CDS-S-dermatodea_contig8985:3728..3826Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8985 3729..3826 -
1694079891.6219912-CDS-S-dermatodea_contig8985:3728..38261694079891.6219912-CDS-S-dermatodea_contig8985:3728..3826Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8985 3729..3826 -
1622925376.6498744-CDS-S-dermatodea_contig8985:4810..48801622925376.6498744-CDS-S-dermatodea_contig8985:4810..4880Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8985 4811..4880 -
1694079891.631104-CDS-S-dermatodea_contig8985:4810..48801694079891.631104-CDS-S-dermatodea_contig8985:4810..4880Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8985 4811..4880 -
1622925376.6650846-CDS-S-dermatodea_contig8985:5587..56471622925376.6650846-CDS-S-dermatodea_contig8985:5587..5647Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8985 5588..5647 -
1694079891.6397598-CDS-S-dermatodea_contig8985:5587..56471694079891.6397598-CDS-S-dermatodea_contig8985:5587..5647Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8985 5588..5647 -
1622925376.682131-CDS-S-dermatodea_contig8985:6623..67761622925376.682131-CDS-S-dermatodea_contig8985:6623..6776Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8985 6624..6776 -
1694079891.6482372-CDS-S-dermatodea_contig8985:6623..67761694079891.6482372-CDS-S-dermatodea_contig8985:6623..6776Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8985 6624..6776 -
1622925376.6977613-CDS-S-dermatodea_contig8985:7185..71991622925376.6977613-CDS-S-dermatodea_contig8985:7185..7199Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8985 7186..7199 -
1694079891.6569138-CDS-S-dermatodea_contig8985:7185..71991694079891.6569138-CDS-S-dermatodea_contig8985:7185..7199Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8985 7186..7199 -
1622925376.7095935-CDS-S-dermatodea_contig8985:8397..85511622925376.7095935-CDS-S-dermatodea_contig8985:8397..8551Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8985 8398..8551 -
1694079891.6663034-CDS-S-dermatodea_contig8985:8397..85511694079891.6663034-CDS-S-dermatodea_contig8985:8397..8551Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8985 8398..8551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8985.17064.1

>prot_S-dermatodea_contig8985.17064.1 ID=prot_S-dermatodea_contig8985.17064.1|Name=mRNA_S-dermatodea_contig8985.17064.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=183bp
MSLTCAKRLRKEMHKLQACPPDQDIALHADEEDIRQWRAHIRGPPDTPYA
GGVKMRLCLSGFNRTFLPPTPETGVYELKITVGQQYPMVPPSMHFVTKVF
HPNVHFNTGEICLNILKKEWSPAWSLQGACRAILALLAHPEADSPLNCDA
GNMVRAGDLRAFNSMARLYKEELASKRWPPEC*
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mRNA from alignment at S-dermatodea_contig8985:3106..8668-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8985.17064.1 ID=mRNA_S-dermatodea_contig8985.17064.1|Name=mRNA_S-dermatodea_contig8985.17064.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5563bp|location=Sequence derived from alignment at S-dermatodea_contig8985:3106..8668- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCATTATTCCGAGCTCTCGCTGAGTCCGCCCAACACAGGACAGGCGTT
GTTGACCCGGCGCCGTTGCGCACCGTCCACCAGGTAGCCACTCCGTATTG
CAACATACGCAGCGGTCATGTCACTGACTTGCGCGAAACGACTGAGGAAG
GAGATGCACAAGCTCCAAGCTTGCCCCCCAGACCAGGACATCGCTCTCCA
CGCAGATGAGGAGGATATTCGGCAGTGGAGGGCACACATTCGCGGACCGC
CAGACACACCGTATGCTGGAGGTATGATATGAGCACAACACAACTCGCAT
TGATACTATAAATACTATTGTATTATAGTATTCATAGGTAGCCACTATTA
GGCTACGCCCGTGAGGTGAAAAATCCTACTCTTTTCAACACATGGCGCTC
AACACAAACATCAAGTAGTTTGGCCTCAAAATCGTGCAGGAGTTTAGCGT
TCAACATCGGCCTCAAAATCGCATAGGAAATAGCGTGGAATGTGCCTCAA
AATCGTTTACCATACTTGTAGGAAATAGTGCGAAATAAACGTTCAAACCG
GTATTAACCCTTTTGGGACTAAGGGTGTTTTCGGGTAATTGTTTGCTATG
ATTATTTACCTATTTGTTGTGGGACTAAAGCTGTTATCGGGCAACTGTTT
GCTAATATGGTAGCCACCAGTTACCCGAAAACAGGCTTCGTCCCCAGGCT
TAGTCCCAAAAGGGTAAATCATAATAGCAAAAACGTACCCCAAAATAGCT
TTAGTCCCAAAAGGGTTACCTGGTAAATAATAAAGATGTTACCTGGTACA
TGGGAAACAATCCTTAGCGATATACTGCAAAAGCCACGCAACGCTATACA
AGTCCTGCAGCTTGCAGACAGCAATAAGTACTGAAAGAGCGCGGCTCTCG
TTCTGTTTTCGGTACCGGGGCAAGTCAACGATAGCCTCTCTCGATGGTAG
TTAATGCATGCTGATATTGTTATTACTGTTCTAGAGCTCTTAATGGTATG
AGGTCACGAAAGGGTGCGCATGAGCGGACGAGCGCGCGAGTTTCTGTGTC
GACCATTGACGCACCTACATGAAGGAGTTGTATAATGTCCCCCGCGGATT
CCGAGCGTTTGTTGACTATAATCGAAGGTAATTCCGGAAGTTTTTTCACC
AATCTCTCGATTTTTTTCATCTGACCACGAGCGAGCGGGATCGGCAACCA
TTGGTGGGCCGATCGGCTGTAAGTGTGATGATATTAATAGTCAATCGAAT
CAAATCAAATCATCAATAAAAAACCAAATGTACTCGAGCCCGTGGTCGAG
CCTCAGCAAAGAGTCCCACCACTCAACGTCCAACTATGTCCAGGATTTGT
TTGTCGATTTATTGCTGGTGTTCCACAAGTGGGGTCGAAATCGCCAGATC
CCCTAGACAGTGAGTAATGCAAATATAGGAGGGTTATGGTAAGACAATCG
GATTTTGTCTGTCGCGTAGGAGTAAAAATGCGTGTTTTCATTTTGCTGTG
CTAGCGCCTGATTGGCCAGCCCATCTCAAATTGTCCCGTTCCGAGTTCAC
CAGGTTCAACCAGCATGTTCCGGATTGCAACATTTTTATTGTGCATGGCC
GGCCGATAACCCCTCCCCCCCCGGTCTATGGTCTAACGACTACGGCATGC
CCGATCAATGAGTGCCCCCCCCCCCCCCTTCTCTGGAGTGCTCAGTATTT
GGTTGGTTGATTGATTTGCACACGTTTGTCAGTGCGATCGCAAAGAGTCT
TTTGTATATTCATAGTGTGGAAATCAAGTATTAAATCAAGTATTCAATCA
ATCAACCAATCAATCAACCTATTCCTCTTGAGAGCTTGGACTAGATGGAG
CTCGCGCTCGGTCGCTCGCCGTGCGGAGGGCTGCTGAATTAGCTCTGCTT
GTCCGGCTTTAACCGGACCTTCCTCCCGCCGACTCCCGAAACAGGTGTCT
ACGAACTTAAAATCACGGTGGGGCAACAGTACCCCATGGTACCTCCGTCC
ATGCACTTCGTCACCAAGGTTTTCCACCCTAACGTTCACTTCAACGTGAG
TTGCGCCATTCGGATGCACCTACAATAAGAAATTTACTGTGTACAAGTAT
TTATACGTATTTGGCACCGGTCACGTTTTGCGCTACAAGTATAACTTCCC
AACTCTGTACTACGAGCGCTTCGAAATGAGAAAGCGTGGTGACATCATCG
GGAGCTTTTGTTTTGTCCAAAATGGATGTTGTTTTGCGGCTTGAGATGGC
GCACTGTACGATTGATCCAACGAGCACTCTGCCGTACAACAGACAGCACC
ATTCTCAAGGAGCTTTCACGGGGTTGACTTGGCGAATGTTGGTTGATGTC
GCAGGAGGTGCATCGCTAGGACACGGCTAGAACAGCCGATCAGCGACGAA
GGTAACATTTATCGTTTGCTTCACATTTTGGAGAGGAGCGAGCACGGCGT
GCGCCTCATCACAAGCCGCTCGGCACGGCATAAGATAAAACACGGCGGAT
AAAGAACCCATAACACGACCAATAGCCCGATGTACCGGTTCGGCAGTAAC
GGTCAAATGCGCCTCCAGCACCCATATACCAACCACCATTCATGGTAGTA
TCCACGCTACGTAACCATCGCTCGATCTCGCGGCGGCGCGGCGTTTTTTG
TCGGAGAATTGTGGGGCGTTGTACCAACAAGTAGCACTGCTCACGCGAAC
ATTGAACGCTTCAATTCAATTCATCCATCAAGGGTGGACGAACCATTCGG
CGTCTCGCAAGTATCGCCTTCGGGGCGCGTGGCCGGGGTTTGCATCCAGC
TGGAACGGCTAGCCAATCCCGGCGCACCTACCAATATCGTAACCTGTTAC
CTTCCAAGTTCGAACCTCGGCTACAAACTACGGCCAGTGGCAAACCTTAA
CATCGAGTCTTCCCCGCACGGGCCAATTGGTCACAGCGACGGATAACGCC
GTGTTGCCTTGAGTCACGTCTTGCGCCATCCCCTTTGCGTGTGCCCCCTT
CCGGCGTGTCCTGTCCACCAGACTGGCGAAATCTGTCTCAACATTCTCAA
GAAAGAGTGGTCGCCTGCTTGGAGTCTCCAGGTGAAAACAACCTCGAGCA
ATCAACAAGTATACGGGCGCACGGCACAGACAGACAGAGTCTCCTTATTT
CCCCTCCTCCTTAGCCGTCCTAAATAGTAACCTCGTGTGTGTGTACCCCA
CTTCGGGAACTGTAAGGAGGCGTGTGCATCGATGCTTGGGTTGGCTTACC
GATGTCTGCGTAGACCCGTATTTAAGACGTTAGTAGTTAACCCCCTATGA
TAGCAAGGCGAGGTCCGACCAATCAACGTTGCTGAAAGCTTTCGTCTTTT
CCTGCGGGAGTTGGTAAAATAACGCGAGGCAGCGACCCGACCGCGCACAG
CAGTAGACGTCGACTGACTAGTCTGTGGTCTTGTCCGCATAGTACTTCTT
AGTGGTCGGCGGTCACTCGATCAAGTAATGCGTAAAGTGTGGTCTTGTCA
TCATGGTGTTTTCCTGTTTTTTTTTATGCCAGTTGCACTGTGCATGTGTC
GTGTCGCACAAGGCAGACAAGTCGAGAGAGACACATGGCAGTTTCGAGCC
CGACGCAGCAGCAGTTGCCCCCCTGTCTTCGCGGCGCTGGCATGCCCGTG
CCCGTTGGGCGTTGTTCGTCGTGTCGGTTTTTCCCGGCGTCCCAGACGAC
CCACACAAGTGACATTTGGTCCGCGTTGCGAACCGCGCCGCCGCGGTTTC
TTCTCGTGCTTTTGTTCCGTGCTCTTTTGCTTCGTCAGGGGGCCTGCAGA
GCGATTTTAGCGCTCCTCGCACACCCCGAAGCTGACAGTCCGCTCAACTG
CGATGCAGGTGAGAGCCTCTATACAGCATTGTAGTGAGATGTGTGCTGGC
ATTCGATTCTCCGCCGGCCGGTCGTTACTCAAAAGTCTCCGCGCGATATC
AGCGGTGGTTATAACCTACTCCTGTCTCCCCAGCTTGGTTACGTTTCCCT
CCGAGGTGTGATGGGTCAGCGAGCGATTTGCTGTAGCAACTCGCTGACCC
CGAAGTCCGTTTGTCTCTCGTGTAATCCCTGGCACCGCCAGTACCTCCCG
CATTATGTCGAAAATATCGCCACCCAGAGGACATAGTCCCTTGGTGGCGA
GAGCACCAACAGCAGTCGAGTACACCCAAAGATGTGTTGCATTCAAGAAA
CTGCTGGGCTGGGCATTCGATAGAGCTCCTTGGTGCAGCAGGTTGCGAGA
GGTTTCTTTCGTTGCGTTCTACAGCAAGCTCTTCTGCTATGCCCCCTCCC
CCTACGAGTATAATAGTATGATAGCAGTATTATACTGGGGGATAAGAATT
GCCCCGGAAAGGCGATAATTTAAGTAGAAAATAATAGGAAAAACGTTTTT
GAGCCACCTTTCTTTGGCATACTAGGAAGGGAACTGTTAATATGAGCCGT
CCGTGATCGATCCTGTGGGATTAATGCTCCGTCCTCTCGAAGACGCGTGG
TCAATGGCCTCTTAGCCAAGGCATCCATAACTTGAGCACGCCCCCTGATA
CAATACACTGGTATGATTTATAAAACATAGAGCGAGCGTTGGGGTCCAAT
ATTTGTGTAGAGTACCCCCCCCCCCTTAAAAATACAATGATTTCAAAACA
TATAGCGAGCGTTGGGGTCCCTTCTTTTCAATTGGGAAGCTCGTCCAAGC
TACATCTATGGAGGCTCACTTGTTGCGTACGATGCCATGGTTTCATGTTG
AGTACCCCCCTAAAAATTAGAGTAGCCCCACCCTCTCCCCCGTACCGGCG
ACGACGTTAATCACCGTCTTGCGTGCCGCTCTCGTTTGTCAGGAAATATG
GTGAGAGCAGGCGACTTGCGCGCCTTCAACTCGATGGCTCGCTTGTATAA
GGAGGAGCTGGCGTCCAAGCGCTGGCCACCAGAGTGCTAGATACTGTTAT
TGTATGGCTTGTTGCTGGCCTGTCGTTGCTTCTGCTATTCGGTAGGCAGC
AGCCCGTTGAGCCCTATAGACTACCGCTGTACAATTGACAGTATTATCTA
TCGCTGCGTGTATGATACAGTATATTGTTGATGATGCGTACCTCCCAGAG
CGCAGTAGTTTTTTTCGCCATCAACGGGGCGGGATCCACAAGACGCGCCT
CTGCGTAGAAACGGGCGACGTTTTAGCTCGCTGTTGTCCTACAGCTATCA
TTAAATTACCCGCAATCGATCGGGGAATGCACACGATTTGAAATCAGGTA
TCCTTAAGGTACCGGCTGAAATTTGGCAGGGTTTGGGAGGAATGACCCGC
GGGCGACGAGGCGCATCCGGGGCTGTAAAGTACCTGGTATAATGGGTAGT
GCATATTGTTAGCGCAGGCATGCGGAGAAAAGTGTTCTGACATTGATTCT
CTGCAAGTCTGCTCCCCGTCATCCTTGCGGTTGTCTTTATGATATCTCCT
CCGCTTCTACTGCTTGCTTTCGACTTCTTTTCATAATATGGTTATTTATA
GTGTTCTTACTACCCACTCTTCCTTGTGTATAATATTTTGAAATTGACCA
ACGCCTATATCGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8985:3106..8668-

>mRNA_S-dermatodea_contig8985.17064.1 ID=mRNA_S-dermatodea_contig8985.17064.1|Name=mRNA_S-dermatodea_contig8985.17064.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at S-dermatodea_contig8985:3106..8668- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCACTGACTTGCGCGAAACGACTGAGGAAGGAGATGCACAAGCTCCA
AGCTTGCCCCCCAGACCAGGACATCGCTCTCCACGCAGATGAGGAGGATA
TTCGGCAGTGGAGGGCACACATTCGCGGACCGCCAGACACACCGTATGCT
GGAGATGTCACTGACTTGCGCGAAACGACTGAGGAAGGAGATGCACAAGC
TCCAAGCTTGCCCCCCAGACCAGGACATCGCTCTCCACGCAGATGAGGAG
GATATTCGGCAGTGGAGGGCACACATTCGCGGACCGCCAGACACACCGTA
TGCTGGAGGAGTAAAAATGCGTGAGTAAAAATGCGTCTCTGCTTGTCCGG
CTTTAACCGGACCTTCCTCCCGCCGACTCCCGAAACAGGTGTCTACGAAC
TTAAAATCACGGTGGGGCAACAGTACCCCATGGTACCTCCGTCCATGCAC
TTCGTCACCAAGGTTTTCCACCCTAACGTTCACTTCAACCTCTGCTTGTC
CGGCTTTAACCGGACCTTCCTCCCGCCGACTCCCGAAACAGGTGTCTACG
AACTTAAAATCACGGTGGGGCAACAGTACCCCATGGTACCTCCGTCCATG
CACTTCGTCACCAAGGTTTTCCACCCTAACGTTCACTTCAACACTGGCGA
AATCTGTCTCAACATTCTCAAGAAAGAGTGGTCGCCTGCTTGGAGTCTCC
AGACTGGCGAAATCTGTCTCAACATTCTCAAGAAAGAGTGGTCGCCTGCT
TGGAGTCTCCAGGGGGCCTGCAGAGCGATTTTAGCGCTCCTCGCACACCC
CGAAGCTGACAGTCCGCTCAACTGCGATGCAGGGGGCCTGCAGAGCGATT
TTAGCGCTCCTCGCACACCCCGAAGCTGACAGTCCGCTCAACTGCGATGC
AGGAAATATGGTGAGAGCAGGCGACTTGCGCGCCTTCAACTCGATGGCTC
GCTTGTATAAGGAGGAGCTGGCGTCCAAGCGCTGGCCACCAGAGTGCTAG
GAAATATGGTGAGAGCAGGCGACTTGCGCGCCTTCAACTCGATGGCTCGC
TTGTATAAGGAGGAGCTGGCGTCCAAGCGCTGGCCACCAGAGTGCTAG
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