mRNA_S-dermatodea_contig8981.17061.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8981.17061.1
Unique NamemRNA_S-dermatodea_contig8981.17061.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8981.17061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8981contigS-dermatodea_contig8981:2665..3050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925376.4164052-CDS-S-dermatodea_contig8981:2664..30271622925376.4164052-CDS-S-dermatodea_contig8981:2664..3027Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8981 2665..3027 +
1694079891.5094872-CDS-S-dermatodea_contig8981:2664..30271694079891.5094872-CDS-S-dermatodea_contig8981:2664..3027Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8981 2665..3027 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925376.4278865-UTR-S-dermatodea_contig8981:3027..30501622925376.4278865-UTR-S-dermatodea_contig8981:3027..3050Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8981 3028..3050 +
1694079891.5178773-UTR-S-dermatodea_contig8981:3027..30501694079891.5178773-UTR-S-dermatodea_contig8981:3027..3050Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8981 3028..3050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8981.17061.1prot_S-dermatodea_contig8981.17061.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8981 2665..3027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8981.17061.1

>prot_S-dermatodea_contig8981.17061.1 ID=prot_S-dermatodea_contig8981.17061.1|Name=mRNA_S-dermatodea_contig8981.17061.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
ARNKLALHGDRYSNCIRTNRDVTYFSRTAGNFLLRFLHKSHRTIGVRDVT
VSKRRSLDHVCHRRFPFPAREGFPPFTSSIQIQPGLAATKRAQKTRLPRG
QTQCKDGVAHRNVCNQQHAI*
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mRNA from alignment at S-dermatodea_contig8981:2665..3050+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8981.17061.1 ID=mRNA_S-dermatodea_contig8981.17061.1|Name=mRNA_S-dermatodea_contig8981.17061.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=386bp|location=Sequence derived from alignment at S-dermatodea_contig8981:2665..3050+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCCGGAACAAGCTCGCACTCCATGGCGACCGTTACAGTAACTGTATTCG
TACAAACCGAGATGTAACATATTTTTCACGTACGGCAGGCAATTTTCTAC
TACGCTTTTTACACAAATCACACCGTACAATAGGTGTACGCGACGTCACA
GTGTCCAAACGGCGCTCCTTGGACCATGTTTGTCATCGACGATTTCCATT
TCCAGCGCGCGAGGGTTTTCCACCTTTTACCTCGTCGATCCAAATCCAAC
CCGGCCTCGCGGCCACTAAACGGGCCCAAAAAACACGCCTACCGCGAGGC
CAAACCCAATGCAAAGACGGAGTAGCGCATCGGAATGTGTGCAACCAGCA
GCACGCTATTTAGCTGTGCAGCGCAACACGGGAAAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8981:2665..3050+

>mRNA_S-dermatodea_contig8981.17061.1 ID=mRNA_S-dermatodea_contig8981.17061.1|Name=mRNA_S-dermatodea_contig8981.17061.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig8981:2665..3050+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCCGGAACAAGCTCGCACTCCATGGCGACCGTTACAGTAACTGTATTCG
TACAAACCGAGATGTAACATATTTTTCACGTACGGCAGGCAATTTTCTAC
TACGCTTTTTACACAAATCACACCGTACAATAGGTGTACGCGACGTCACA
GTGTCCAAACGGCGCTCCTTGGACCATGTTTGTCATCGACGATTTCCATT
TCCAGCGCGCGAGGGTTTTCCACCTTTTACCTCGTCGATCCAAATCCAAC
CCGGCCTCGCGGCCACTAAACGGGCCCAAAAAACACGCCTACCGCGAGGC
CAAACCCAATGCAAAGACGGAGTAGCGCATCGGAATGTGTGCAACCAGCA
GCACGCTATTTAGGCCCGGAACAAGCTCGCACTCCATGGCGACCGTTACA
GTAACTGTATTCGTACAAACCGAGATGTAACATATTTTTCACGTACGGCA
GGCAATTTTCTACTACGCTTTTTACACAAATCACACCGTACAATAGGTGT
ACGCGACGTCACAGTGTCCAAACGGCGCTCCTTGGACCATGTTTGTCATC
GACGATTTCCATTTCCAGCGCGCGAGGGTTTTCCACCTTTTACCTCGTCG
ATCCAAATCCAACCCGGCCTCGCGGCCACTAAACGGGCCCAAAAAACACG
CCTACCGCGAGGCCAAACCCAATGCAAAGACGGAGTAGCGCATCGGAATG
TGTGCAACCAGCAGCACGCTATTTAG
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