mRNA_S-dermatodea_contig8980.17060.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8980.17060.1
Unique NamemRNA_S-dermatodea_contig8980.17060.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8980.17060.1 vs. uniprot
Match: A0A6H5L9S2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9S2_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.350e-13
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = -2 
Query:  236 KDREVYMTEMGKFEGCGREPFDAWDSQTKAVAILGDKKWPEKA-RSPM*TGYMRKTVLRHLRQSRKE-LTIGHRR*MDPVGK-MLRPLKNAW*M 508
            K+REVY+TE+GK +G  RE F+AW+ + + VA++G ++W EKA R  +    + KT L HL QSRKE L IG R      G+ MLRPL++AW M
Sbjct:  160 KEREVYVTELGKIDGTYREMFEAWNREERTVAVVGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDR----SCGRTMLRPLEDAWSM 249
[Close]
BLAST of mRNA_S-dermatodea_contig8980.17060.1 vs. uniprot
Match: A0A6H5K7G9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G9_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.940e-13
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = -2 
Query:  236 KDREVYMTEMGKFEGCGREPFDAWDSQTKAVAILGDKKWPEKARSPM*T-GYMRKTVLRHLRQSRKE-LTIGHRR*MDPVGKMLRPLKNAW*M 508
            K+REVY+TE+GK +   RE F+AW+ + + +A LG + W EKAR  +     + KT L HL QSRKE L IG      PVG MLRPL++AW M
Sbjct:  679 KEREVYVTELGKIDATYREMFEAWNREERTIAALGHRWWVEKARGDIVRIDRLGKTFLSHLWQSRKERLAIGD----GPVGTMLRPLEDAWSM 767
[Close]
BLAST of mRNA_S-dermatodea_contig8980.17060.1 vs. uniprot
Match: A0A6H5K453_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K453_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.880e-12
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = -2 
Query:  293 KDREVYMTEMGKFEGCGREPFDAWDSQTKAVAILGDKKWPEKA-RSPM*TGYMRKTVLRHLRQSRKE-LTIGHR 508
            K+REVY+TE+GK +G  RE F+AW+ + + VA+LG ++W EKA R  +  G + KT L HL QSRKE L IG R
Sbjct:   98 KEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWAEKAGRDIVRIGRLGKTFLSHLWQSRKERLAIGDR 171
[Close]
BLAST of mRNA_S-dermatodea_contig8980.17060.1 vs. uniprot
Match: A0A6H5JA81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA81_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.540e-11
Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = -2 
Query:  236 KDREVYMTEMGKFEGCGREPFDAWDSQTKAVAILGDKKWPEKARSPM*T-GYMRKTVLRHLRQSRKE-LTIGHRR*MDPVGKMLRPLKNAW*M 508
            K+REVY+TE+GK +G  RE F+AW+ + + VA+LG ++W EK R  +     +  T L HL Q+RKE L IG R      G ML PL++AW M
Sbjct:  390 KEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKVRRDIVRIDRLGNTFLSHLWQNRKERLAIGDR----SWGTMLLPLEDAWSM 478
[Close]
BLAST of mRNA_S-dermatodea_contig8980.17060.1 vs. uniprot
Match: A0A6H5JKC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKC1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.650e-10
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = -2 
Query:  293 DASFMNKDREVYMTEMGKFEGCGREPFDAWDSQTKAVAILGDKKWPEKA-RSPM*TGYMRKTVLRHLRQSRKE-LTIGHR 526
            +  +  K+R+VY+TE+GK +G  RE F+AWD++   VA+LG ++W EKA R  +    + KT L HL QSRKE L IG R
Sbjct:  210 ECPWYKKERQVYVTELGKIDGTHREMFEAWDTKESTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDR 289
[Close]
BLAST of mRNA_S-dermatodea_contig8980.17060.1 vs. uniprot
Match: A0A6H5JCQ0_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.360e-10
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = -2 
Query:  293 KDREVYMTEMGKFEGCGREPFDAWDSQTKAVAILGDKKWPEKA-RSPM*TGYMRKTVLRHLRQSRKE-LTIGHR 508
            K+REVY+TE+GK +G  RE F+AW+ + + VA+LG ++W EKA R  +    + KT L HL QSRKE L IG R
Sbjct:  166 KEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDR 239
[Close]
BLAST of mRNA_S-dermatodea_contig8980.17060.1 vs. uniprot
Match: A0A6H5J590_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J590_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.510e-10
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = -2 
Query:  293 KDREVYMTEMGKFEGCGREPFDAWDSQTKAVAILGDKKWPEKA-RSPM*TGYMRKTVLRHLRQSRKE-LTIGHR 508
            K+RE+YMTE+GK +G  RE F+AW+ + + VA+LG ++W EKA R  +    + KT L HL QSRKE L IG R
Sbjct:  275 KERELYMTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDR 348
[Close]
BLAST of mRNA_S-dermatodea_contig8980.17060.1 vs. uniprot
Match: A0A6H5JCA1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA1_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 6.200e-10
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = -2 
Query:  293 KDREVYMTEMGKFEGCGREPFDAWDSQTKAVAILGDKKWPEKA-RSPM*TGYMRKTVLRHLRQSRKE-LTIGHR 508
            K+REVY+TE+GK +G  RE F+AW+ + + VA+LG ++W EKA R  +    + KT L HL QSRKE L IG R
Sbjct:  562 KEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDTVRMDRLGKTFLSHLWQSRKERLVIGDR 635
[Close]
BLAST of mRNA_S-dermatodea_contig8980.17060.1 vs. uniprot
Match: A0A6H5K863_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K863_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 7.580e-10
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = -2 
Query:  293 KDREVYMTEMGKFEGCGREPFDAWDSQTKAVAILGDKKWPEKA-RSPM*TGYMRKTVLRHLRQSRKE-LTIGHR 508
            K+REVY+TE+GK +G  RE F+AW+ + + VA+LG ++W EKA R  +    + KT L HL QSRKE L IG R
Sbjct:  157 KEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDR 230
[Close]
BLAST of mRNA_S-dermatodea_contig8980.17060.1 vs. uniprot
Match: A0A6H5JLM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM8_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 7.660e-10
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = -2 
Query:  293 KDREVYMTEMGKFEGCGREPFDAWDSQTKAVAILGDKKWPEKA-RSPM*TGYMRKTVLRHLRQSRKE-LTIGHR 508
            K+REVY+TE+GK +G  RE F+AW+ + + VA+LG ++W EKA R  +    + KT L HL QSRKE L IG R
Sbjct:  292 KEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDR 365
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8980.17060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9S2_9PHAE2.350e-1348.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7G9_9PHAE2.940e-1349.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K453_9PHAE5.880e-1252.70Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JA81_9PHAE1.540e-1146.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKC1_9PHAE1.650e-1047.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCQ0_9PHAE2.360e-1051.35Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J590_9PHAE4.510e-1051.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCA1_9PHAE6.200e-1051.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K863_9PHAE7.580e-1051.35Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLM8_9PHAE7.660e-1051.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8980contigS-dermatodea_contig8980:847..2030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size1184
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8980.17060.1prot_S-dermatodea_contig8980.17060.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8980 1200..1475 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925376.3576314-UTR-S-dermatodea_contig8980:846..11991622925376.3576314-UTR-S-dermatodea_contig8980:846..1199Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8980 847..1199 +
1694079891.4717526-UTR-S-dermatodea_contig8980:846..11991694079891.4717526-UTR-S-dermatodea_contig8980:846..1199Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8980 847..1199 +
1622925376.38203-UTR-S-dermatodea_contig8980:1475..20301622925376.38203-UTR-S-dermatodea_contig8980:1475..2030Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8980 1476..2030 +
1694079891.4966006-UTR-S-dermatodea_contig8980:1475..20301694079891.4966006-UTR-S-dermatodea_contig8980:1475..2030Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8980 1476..2030 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925376.3723032-CDS-S-dermatodea_contig8980:1199..14751622925376.3723032-CDS-S-dermatodea_contig8980:1199..1475Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8980 1200..1475 +
1694079891.4819818-CDS-S-dermatodea_contig8980:1199..14751694079891.4819818-CDS-S-dermatodea_contig8980:1199..1475Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8980 1200..1475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8980.17060.1

>prot_S-dermatodea_contig8980.17060.1 ID=prot_S-dermatodea_contig8980.17060.1|Name=mRNA_S-dermatodea_contig8980.17060.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=92bp
MYPVYIGLLAFSGHFLSPSIATAFVWLSHASKGSLPQPSNFPISVMYTSL
SLFMKLASRRYMAFTLDRAAITFLLVLAFLAYFPKSQSLDM*
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mRNA from alignment at S-dermatodea_contig8980:847..2030+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8980.17060.1 ID=mRNA_S-dermatodea_contig8980.17060.1|Name=mRNA_S-dermatodea_contig8980.17060.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1184bp|location=Sequence derived from alignment at S-dermatodea_contig8980:847..2030+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTGCATGCCGTAGTCGTTAGACCATAGACCTCGTGGGGGGGGGATTAAC
ACATAAATGACATAAAAACATACTAATAGCATCATACACAGCGGAAGTCT
CTTAGGTGTAGCTTGGACCATATTCCCTTTCACAACGTGGGACCCCAACG
CTCGCCTTATGTCTTTGTAATCCGTATTTTAGGAGGTTGGGGGAGGGGGG
GGGGTCAAGGTTTTTGCACGCCTTAGCTGTTAGGCCATTCACCACGCGTT
CTTGAGAGGACGGAGCATTTTACCCACAGGATCCATCTATCGCCGATGGC
CAATCGTTAGTTCCTTCCTACTCTGCCGAAGGTGGCGCAAAACTGTTTTT
CGCATGTATCCTGTCTACATCGGACTTCTCGCCTTCTCAGGCCACTTCTT
ATCCCCCAGTATAGCTACTGCCTTCGTCTGGCTGTCCCATGCGTCAAAAG
GTTCTCTACCACAGCCTTCAAATTTTCCCATCTCAGTCATGTATACTTCT
CTGTCCTTGTTCATGAAACTGGCATCCCGCCGCTACATGGCCTTCACACT
CGACCGAGCCGCAATCACATTTCTACTAGTCCTCGCCTTTCTCGCCTACT
TTCCTAAATCTCAATCTCTTGATATGTAACGCTTACTTTCCTAAATCTGA
ATCTCTTGATATATAACGCGTGTCGTATCCAAACGGACATAGACCAGCCA
TCTGAGTCCTGCCGGGACAAAGCGATACGTCGGGTTTTCGGCGGCCAGGC
TGCCCTTCACAAGGATGATTTGACACAGTTCGAGCTGCTAGAAACCATCA
TTGTGTTTGCGACGCCAAACAGATGTGCCATCTTGGACATACTGTATTAT
ACAAGGTATCCAAATGAGGCACACTTCGGTAGGCGTGACTATACTCCCAT
GTACCGCAAGGGACTTTGATCTCCATGCGAACGCAGAAGCGCCGGACGCA
CGCAGCATACACGACGGCACATGTTTAATACGCTCGTGACCGCAATCTGC
TCACATACACTCCTACAATCACACGACCTTGGTTGCTCCCGGGCTTTCAA
ACATTCCGTATTTTCAGCAGGTACCCTATATAAAGGATGTCACGTTTTTC
GCCCCATTGGGTAAATACAAGACTCTTCGACCGAGGCCTCTCAGCTCAAA
GGACACACTGCATGAACTCCCCCATTCCTCGACC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8980:847..2030+

>mRNA_S-dermatodea_contig8980.17060.1 ID=mRNA_S-dermatodea_contig8980.17060.1|Name=mRNA_S-dermatodea_contig8980.17060.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at S-dermatodea_contig8980:847..2030+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTATCCTGTCTACATCGGACTTCTCGCCTTCTCAGGCCACTTCTTATC
CCCCAGTATAGCTACTGCCTTCGTCTGGCTGTCCCATGCGTCAAAAGGTT
CTCTACCACAGCCTTCAAATTTTCCCATCTCAGTCATGTATACTTCTCTG
TCCTTGTTCATGAAACTGGCATCCCGCCGCTACATGGCCTTCACACTCGA
CCGAGCCGCAATCACATTTCTACTAGTCCTCGCCTTTCTCGCCTACTTTC
CTAAATCTCAATCTCTTGATATGTAAATGTATCCTGTCTACATCGGACTT
CTCGCCTTCTCAGGCCACTTCTTATCCCCCAGTATAGCTACTGCCTTCGT
CTGGCTGTCCCATGCGTCAAAAGGTTCTCTACCACAGCCTTCAAATTTTC
CCATCTCAGTCATGTATACTTCTCTGTCCTTGTTCATGAAACTGGCATCC
CGCCGCTACATGGCCTTCACACTCGACCGAGCCGCAATCACATTTCTACT
AGTCCTCGCCTTTCTCGCCTACTTTCCTAAATCTCAATCTCTTGATATGT
AA
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