mRNA_S-dermatodea_contig8978.17058.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8978.17058.1
Unique NamemRNA_S-dermatodea_contig8978.17058.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8978.17058.1 vs. uniprot
Match: A0A1Y2VF19_9PEZI (Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase n=2 Tax=unclassified Hypoxylon TaxID=2614581 RepID=A0A1Y2VF19_9PEZI)

HSP 1 Score: 53.9 bits (128), Expect = 2.170e-6
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:  139 LVVAIGAASFLGAAWAFSAS--APEPYMDEVFHVPQTQAYCRGEY 267
            +V+++GA SFL   W  S +   PEPY+DEVFH+PQ Q YC G+Y
Sbjct:   42 IVLSLGAISFLAQKWLSSVTNHVPEPYLDEVFHIPQAQVYCDGKY 86
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BLAST of mRNA_S-dermatodea_contig8978.17058.1 vs. uniprot
Match: A0A061R4K7_9CHLO (Dolichyl-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-dolichol alpha-1,2-glucosyltransferase (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R4K7_9CHLO)

HSP 1 Score: 49.3 bits (116), Expect = 3.630e-6
Identity = 18/27 (66.67%), Postives = 22/27 (81.48%), Query Frame = 1 
Query:  187 FSASAPEPYMDEVFHVPQTQAYCRGEY 267
            F+   PEPYMDE+FHVPQ Q YCRG++
Sbjct:   12 FNGEVPEPYMDEIFHVPQAQRYCRGDF 38
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BLAST of mRNA_S-dermatodea_contig8978.17058.1 vs. uniprot
Match: A0A0P9FBV2_RHOGW (Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A0P9FBV2_RHOGW)

HSP 1 Score: 52.0 bits (123), Expect = 1.020e-5
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:  133 KILVVAIGAASFLGAAWAFSASAPEPYMDEVFHVPQTQAYCRGEY 267
            +++  A  AAS    A   +  APEPYMDE+FHVPQ QAYCRG++
Sbjct:    6 QLVAYAAWAASSTAVACFINRHAPEPYMDEIFHVPQAQAYCRGDW 50
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BLAST of mRNA_S-dermatodea_contig8978.17058.1 vs. uniprot
Match: A0A8H6XGB5_9AGAR (Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H6XGB5_9AGAR)

HSP 1 Score: 52.0 bits (123), Expect = 1.060e-5
Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:   91 KRASRPSRATADVTKILVVAIGAASFLGAAWAFSASAPEPYMDEVFHVPQTQAYCRGEY 267
            + +S   RAT DV K   ++ G   F   A  F++   EPYMDE FH+PQ QAYCRGE+
Sbjct:  106 RASSSDERATLDVGKRKDISTGPVFF---AHEFNSVVDEPYMDEPFHIPQAQAYCRGEF 161
[Close]
BLAST of mRNA_S-dermatodea_contig8978.17058.1 vs. uniprot
Match: A0A061QZA4_9CHLO (Dolichyl-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-dolichol alpha-1,2-glucosyltransferase (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QZA4_9CHLO)

HSP 1 Score: 49.3 bits (116), Expect = 1.160e-5
Identity = 18/27 (66.67%), Postives = 22/27 (81.48%), Query Frame = 1 
Query:  187 FSASAPEPYMDEVFHVPQTQAYCRGEY 267
            F+   PEPYMDE+FHVPQ Q YCRG++
Sbjct:   29 FNGEVPEPYMDEIFHVPQAQRYCRGDF 55
[Close]
BLAST of mRNA_S-dermatodea_contig8978.17058.1 vs. uniprot
Match: A0A0A9V330_ARUDO (Dolichyl-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-dolichol alpha-1,2-glucosyltransferase n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9V330_ARUDO)

HSP 1 Score: 48.9 bits (115), Expect = 1.440e-5
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:  133 KILVVAIGAASFLGAAWAFSASAPEPYMDEVFHVPQTQAYCRGEY 267
            ++ V A+ A+  +  A    A  PEPYMDE+FHVPQ Q YCRG++
Sbjct:    3 RLTVAAVVASWAIPIAALLDAIVPEPYMDEIFHVPQAQQYCRGDF 47
[Close]
BLAST of mRNA_S-dermatodea_contig8978.17058.1 vs. uniprot
Match: M7U5Y1_BOTF1 (Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase n=1 Tax=Botryotinia fuckeliana (strain BcDW1) TaxID=1290391 RepID=M7U5Y1_BOTF1)

HSP 1 Score: 50.4 bits (119), Expect = 3.200e-5
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:   94 RASRPSRATADVTKILVVAIGAASFLGAAWAFSAS--APEPYMDEVFHVPQTQAYCRGEY 267
            R+   SR   +V   L V++  AS  G  W +  +   PEPY+DEVFH+PQ QAYCR +Y
Sbjct:   18 RSDPSSRRGLNVKTALAVSLTVASLAGF-WEYQVTKNVPEPYLDEVFHIPQAQAYCRWDY 76
[Close]
BLAST of mRNA_S-dermatodea_contig8978.17058.1 vs. uniprot
Match: A0A384K519_BOTFB (Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase n=2 Tax=Sclerotiniaceae TaxID=28983 RepID=A0A384K519_BOTFB)

HSP 1 Score: 50.4 bits (119), Expect = 3.590e-5
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:   94 RASRPSRATADVTKILVVAIGAASFLGAAWAFSAS--APEPYMDEVFHVPQTQAYCRGEY 267
            R+   SR   +V   L V++  AS  G  W +  +   PEPY+DEVFH+PQ QAYCR +Y
Sbjct:   18 RSDPSSRRGLNVKTALAVSLTVASLAGF-WEYQVTKNVPEPYLDEVFHIPQAQAYCRWDY 76
[Close]
BLAST of mRNA_S-dermatodea_contig8978.17058.1 vs. uniprot
Match: M7WKK8_RHOT1 (Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase n=2 Tax=Rhodosporidium toruloides TaxID=5286 RepID=M7WKK8_RHOT1)

HSP 1 Score: 50.1 bits (118), Expect = 4.850e-5
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:  157 AASFLGAAWAFSASAPEPYMDEVFHVPQTQAYCRGEY 267
            AA+ +G A   + +  EPYMDE+FHVPQ QAYCRGE+
Sbjct:   14 AAASVGVAVRINRTVDEPYMDEIFHVPQAQAYCRGEW 50
[Close]
BLAST of mRNA_S-dermatodea_contig8978.17058.1 vs. uniprot
Match: A0A420YHC5_9PEZI (Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase n=1 Tax=Coniochaeta pulveracea TaxID=177199 RepID=A0A420YHC5_9PEZI)

HSP 1 Score: 50.1 bits (118), Expect = 4.970e-5
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:  139 LVVAIGA---ASFLGAAWAFSASA--PEPYMDEVFHVPQTQAYCRGEY 267
            L+  +GA   +S LG  W  S +A  P+PY+DEVFH+PQ QAYC+G++
Sbjct:   59 LITFLGALFFSSILGLYWTMSVNAFVPKPYLDEVFHIPQAQAYCKGKW 106
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8978.17058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A1Y2VF19_9PEZI2.170e-653.33Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-g... [more]
A0A061R4K7_9CHLO3.630e-666.67Dolichyl-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-dolichol a... [more]
A0A0P9FBV2_RHOGW1.020e-553.33Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-g... [more]
A0A8H6XGB5_9AGAR1.060e-547.46Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-g... [more]
A0A061QZA4_9CHLO1.160e-566.67Dolichyl-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-dolichol a... [more]
A0A0A9V330_ARUDO1.440e-548.89Dolichyl-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-dolichol a... [more]
M7U5Y1_BOTF13.200e-545.00Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-g... [more]
A0A384K519_BOTFB3.590e-545.00Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-g... [more]
M7WKK8_RHOT14.850e-559.46Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-g... [more]
A0A420YHC5_9PEZI4.970e-550.00Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-g... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8978contigS-dermatodea_contig8978:4387..7788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size271
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925376.1255054-CDS-S-dermatodea_contig8978:4386..46021622925376.1255054-CDS-S-dermatodea_contig8978:4386..4602Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8978 4387..4602 +
1694079891.3154237-CDS-S-dermatodea_contig8978:4386..46021694079891.3154237-CDS-S-dermatodea_contig8978:4386..4602Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8978 4387..4602 +
1622925376.1353881-CDS-S-dermatodea_contig8978:7735..77861622925376.1353881-CDS-S-dermatodea_contig8978:7735..7786Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8978 7736..7786 +
1694079891.3256373-CDS-S-dermatodea_contig8978:7735..77861694079891.3256373-CDS-S-dermatodea_contig8978:7735..7786Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8978 7736..7786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8978.17058.1prot_S-dermatodea_contig8978.17058.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8978 4387..7786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8978.17058.1

>prot_S-dermatodea_contig8978.17058.1 ID=prot_S-dermatodea_contig8978.17058.1|Name=mRNA_S-dermatodea_contig8978.17058.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=89bp
PRLWLRPYSAQLSFYQMLQPREGYESHPAEKRASRPSRATADVTKILVVA
IGAASFLGAAWAFSASAPEPYMDEVFHVPQTQAYCRGEY
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mRNA from alignment at S-dermatodea_contig8978:4387..7788+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8978.17058.1 ID=mRNA_S-dermatodea_contig8978.17058.1|Name=mRNA_S-dermatodea_contig8978.17058.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3402bp|location=Sequence derived from alignment at S-dermatodea_contig8978:4387..7788+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCACGGCTCTGGCTGCGGCCTTATTCAGCTCAGCTGTCGTTTTACCAGAT
GCTGCAGCCACGAGAAGGCTATGAATCTCACCCGGCGGAGAAACGTGCAT
CCCGTCCTTCAAGAGCTACAGCGGACGTGACGAAAATCCTCGTCGTTGCG
ATCGGAGCGGCTTCTTTCCTGGGAGCAGCGTGGGCTTTCAGCGCTAGCGC
GCCCGAACCCTACATGGTGAGTAGTCAATCGCGCCGCTTTCGAGCGTGGG
GTGACCAGTGTCACTGCTGAGCTTAGCTCCTGTGTACGGTGGGACTTGCC
TGTCAGCCAGCAGCGGTCTCGGTTTGGATCTGTGAGATTGATTTGGATAC
ACACTTTTTCAAGCAAGAAGGGGATGCGGGTGCGTGCTCGTTGCTTCGTG
TTCGTGGATTCGTACAAGTATAATATTACAACTATAAAACACGACATGCG
GAGAGATGAGAGATGCTCTGCTGGCTTCTCTTGAAGCACGCACGGTGCAT
GCATGGATGGCAGGGGTGACATGATGGTGAGGTTTAAGCGCGGGGCATTG
CTTTCCGCAATTAACAGGGCGGACTGTTAAGGTTGACGCAATGAAACGCA
TGCGCAGCAGCAAGCGAAGCGAGAATTGGGCCTTGATCGGTGCGCGAAGC
AATGGGGTAGGGAGTCGTACTGCTGATACTTGTTGTACATACTTGTAGGA
TATGGCGGTACCACGTCTCATGCGCACAACAGCCGAGAGCTACAACTGCC
GTAGTACAAAGCTCTACATATTTACCTAGCTCGAGAGCTGTCGCTCCATC
AACCGAGCATTCTTGATTGCGCTGTGGTCGTGGTTGAAGCAAGGGCCATC
TACTGAGGCCGACTCTTGTCGCAACAGAAAACGAAAACGAAAATGGACGG
TTTTCGATATTTATTTTCGGTCACAGAAAATCCAAGAATCGCTGTCTTAT
CGGCTCCGGTTTGTTTTGTATTTGAATCATCAGCTGTACTGCTGTAATTG
CCAACGTAGTTTTTTCTCCCTGTGCCAGACAGAGAGAGACACCACAGAAC
AGCAGCCCCTTGGCAGGGCGAGACAGAGCAAGCGGCCGCGGGCGACACGG
CGATGCACCATGACTGGCGCGTCTCGTCCACGCCCGTGTGTCTCCAGCAG
CGTGCTCTGCTGTGTCGGCAGTGTTGTTTGCAGGATGCATGTGCATACAT
CAGACATGATGATACTTTTGTCGTTGTACACGCGTGTGAGATTGGGAACG
GAAAGAGACTGCTCAGCTCCACGGCTGCATTCAGCAGTCTTTGCACACGA
ACAGCAGTCTTTGCACACGAACAGCAGTCTTTGCACACGAACAGCAGTCT
TTGCACACGAACAGCAGTCTTTGCGCGGCAGGGGTGGCTTGTCCAGGCGG
CACGCCGGTGCGCATGCGCCGTCCGCGGCCTGGCGCCGTCTGTGTGGGCC
TGTTTGCTGTCCTACCCGTGTTACAAGACCCTACTATGATGTGAAAATAC
CCATACTATGACGACAAAAGCAGAGTCTCGCGCCGCAGATGGGCTTACGC
CTCCGACTACCTTAGTGCGTCGAAAACGGAGATCGATTTTCGATGTCGAT
TCTTCCTCCGAAATGGAGCCCATTTTCGATATGGAGGGCAATCGAAAACG
CGATATCGAAAATGGCTCCTCGAAAATGGGCTATTTCGGATTCGATAAGA
AAGAAAATCGAAAATGAATATCGAAAATGAATACAGTATTGAAAATCGTC
CATTAGAGATATCGTTTTCTGTTGCGATAAGAGTCGGCCTCAGCCGACTG
GGCCACTCACGCGACAATGGATGCTCATGAATACAAGTATACAAGAAGGA
CCCTGTACAAACACTACACTGCTGCACAGAGGACTGCTGTGGCCGGTACA
GTAATCGGGAACCACCGCCGGTAATCTTGTTTTTCAAACCCAGCAGCGAA
CCAACCGCGGCTAAGTGCTACCAGTACAATTCGCCGTAAAAAGTAAGGGC
GGTGGGATCATGCCGCCGCTGCATGGCCTTCGTCCTAGAGAGCGCCTACA
TCCCATGGGTGGGTGCACTCGTGCATCCATGTACATGTTAAATGCATGTA
TCATGTATGTGTACGTAGACCGACGGGGGAGATAAACCTGGCGTAGGCGC
TCGAGAGGAGGAGTGCCGTTACCACCTACACTCACCTACAATGGCCGTCT
TGTAATTTCATTGTCGACTTTCTTTGGACAAAGAGTGGCGTTTAGGCCTT
TTGTCGTTTCTCCGTTGACAACCCCCCAATCCCAACCCTGACCCTATCCT
TACTAAAGCAACCCTGACCCCAACCCTGACCCGAACCCACAGCATTGGGT
ACGTGCTATCGGGTTAGGGTTACGGTTAGGGTGGGTACGTGCTAGGTTGG
TGTACTGTAGACAACTACGGCCTAATTCGGGCGTACCGTCCTGTCTAAAA
CGATGCACCACCGTCCGTGTGTGCAGGTAGCAGTAGTTTTGGTATTTATA
AAAATACAAAATCTAGTTCCCATGTACATCCCTAACTCACAAGCACACTG
GTTCAGGAGANNNNNNNNNNNNTGAAAGTAGGTACGTCCTTTACTCTCTC
AGTAAGGCACATGTGCTGGGGGGGACTATAAATGACTATAAATGACTATA
AATGACTATAAATGACTATAAATGACTATAAATGTCTATAAGTGTACAGG
TGGACTTATAATAGTGTGTATACATCGCGCGAGAAAGAAAAACTCCATTT
CCAAATCGTGAGCAGAACGTGTCCCCGTGTATATGTACCGCCGGTCAACA
GAAATTCTCGGGGGGTATCCCTCCAGTGATTCTGTACATGTGTCTCAATT
TATAAATGGGGAGACATTCCAAGCAGAAGGCAATTGGGTACAGTATAGAG
TGCAGAGTATATTCTCTTCGCGGCAACCAACCGACCGAAGCGCCGCGACG
TGTTCTGATTGGACCTAAATGTCAACCATTGTCCAAAGTCGACCAGTATA
CTGCTGTGTAGTAATATACCAATATTAGGTGGTACACTCTGCTCAATTTA
ACGGCAGTGGAGACTCGCCCTCCTCGTCCTAGCCCGTCGACGCCGCCGAG
CGTTACTTGCGAGCACTTCTTCTGTTTCAGCAAGGGACCGGACGCCCCTC
TCGGCTCGCGTTGGCTTGCGCCCACAAACAACCTCAACCGCGAGCGGGGT
TGGTTGATAGCTACGACGGTCGAACGTTTGGCGGGTCACCCCCTCGTGGT
GCGAGGTGGTCTGAACCAAATTTCTCGATTCTGCTCTCGGTTTCCCTTTT
GCTCCCCTCCCGAACGGCCACCCCCCCCCTCCCCGCCCATTTTGCCCAGG
ACGAGGTGTTTCACGTTCCCCAGACTCAGGCTTACTGCAGAGGGGAGTAC
GG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8978:4387..7788+

>mRNA_S-dermatodea_contig8978.17058.1 ID=mRNA_S-dermatodea_contig8978.17058.1|Name=mRNA_S-dermatodea_contig8978.17058.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig8978:4387..7788+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCACGGCTCTGGCTGCGGCCTTATTCAGCTCAGCTGTCGTTTTACCAGAT
GCTGCAGCCACGAGAAGGCTATGAATCTCACCCGGCGGAGAAACGTGCAT
CCCGTCCTTCAAGAGCTACAGCGGACGTGACGAAAATCCTCGTCGTTGCG
ATCGGAGCGGCTTCTTTCCTGGGAGCAGCGTGGGCTTTCAGCGCTAGCGC
GCCCGAACCCTACATGCCACGGCTCTGGCTGCGGCCTTATTCAGCTCAGC
TGTCGTTTTACCAGATGCTGCAGCCACGAGAAGGCTATGAATCTCACCCG
GCGGAGAAACGTGCATCCCGTCCTTCAAGAGCTACAGCGGACGTGACGAA
AATCCTCGTCGTTGCGATCGGAGCGGCTTCTTTCCTGGGAGCAGCGTGGG
CTTTCAGCGCTAGCGCGCCCGAACCCTACATGGACGAGGTGTTTCACGTT
CCCCAGACTCAGGCTTACTGCAGAGGGGAGTACGACGAGGTGTTTCACGT
TCCCCAGACTCAGGCTTACTGCAGAGGGGAGTAC
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