mRNA_S-dermatodea_contig8977.17057.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8977.17057.1
Unique NamemRNA_S-dermatodea_contig8977.17057.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8977.17057.1 vs. uniprot
Match: A0A6H5JJQ2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ2_9PHAE)

HSP 1 Score: 585 bits (1509), Expect = 1.740e-195
Identity = 385/699 (55.08%), Postives = 450/699 (64.38%), Query Frame = 1 
Query:  349 KTLGRLFARALQLHPRNAGLWIKAASWEMFDSGNSSSARALMQRGLRINPGSRSLLLQYFRLEFCYVQKLAGRREVLGLEGGDGXXXXXXXXGIGDAELGVEVDGESAGRESMDIPELEAEEGQGGDTSLDGVKQAAEAAAAARA---ARPAPVMNDISRRFYKGAVPLAVFRAAIKAVPGDVGFRADFLRCCATDFPSLGDEVAEAILTSIAQDFPESCEAWEVRALHPLLAAQGKGKGFRQEGAAAAGGTGDGVVQECVNVFELAVEAVGAREPGMWVRYSAFIRGRLESRAQGEGGRESEXXXXXXXXXXXXXXXXXXXXXXXXXIEGGVS-ETVAAA---------VALQLQQVLTRAVKAHLSGNRDPTDGSPXXXXXXXXXXXXXXXXXXXXXXXXDTED--------RHEKTRRAEDAREALSAGLADVCLAQGEPGLALEALRAATACLPSRAGPWLRRAALERRLASLGLGPSP---PSSSPTVAAAEGRTTA-------IATATLQEGLKSVPPTAAEYPKVWRELLGTLVAAGAG-----KKAIAAAFRAAVGACDPTGADEGIAQGEFLAGYLRWSASAEGAEAARGALRWARRSFLLAGTGAAAAYGEAIELERTVSADGGXXXXXXXXXXXXXGRVKRVRELYEDAVDKFGESMPTIWNEYAEFETQEGDIKRANAVRWRARQRQ 2337
            + LGRLFARALQLHPRN GLWIKAASWE FD GN+SSAR+LMQRGLRINPG+R+L LQYFRLEF YV+KL GRRE+LGLE   G        G GD   G +      GR  MDIPELEAE GQ G  S   V++AA A  A      ARPAPVMND +RRFYKGAVP+AVFRAA+KAVP DVGFRA FLRCCA DFP L  E A++ILTS+ +DFP+SCEAWEVRA +P LAA+    G        AG  G  VVQE ++ FELAVEAVGA +P MWVRY++F+RGRLE+  +G  GR+                           ++GG   E V A+         +A +L++VL R+V+ HL+G   P D  PXXXXXXXXXXX              T               RR ED+REALSAGLADVCLA GEP  AL ALRAAT  LP R GPWLRRAALERRLA+LG  P     P+S                    +A ATL+ G+K+V P A  YP +WRELL +LVA+GAG     K A+AAAFR AV AC    A    AQGEFLAGY+RWSA+ EG +AAR AL+WARRSFLL GTGAAAAYGEAIELER +  + G              R KRVREL+ED+VDKFG  +P IW EYA+FE QEG++KRANAVRWR++Q+Q
Sbjct:    4 QALGRLFARALQLHPRNPGLWIKAASWEFFDGGNTSSARSLMQRGLRINPGARNLWLQYFRLEFSYVEKLMGRREILGLEAERG--------GAGDNGQGNDXXX-XGGRRGMDIPELEAEAGQSGGPSFKAVRKAAGAEGALGGDDGARPAPVMNDTARRFYKGAVPMAVFRAAVKAVPADVGFRAGFLRCCAEDFPVLSSEAAQSILTSMERDFPDSCEAWEVRASYPQLAAEAAAAGRD------AGRLGSAVVQESLDTFELAVEAVGASQPDMWVRYASFLRGRLEA-CEGAKGRKR----------------------GGGAVDGGKGGEMVGASAPXXXXXXXLAARLREVLARSVEIHLAGGAAPND--PXXXXXXXXXXXIAARKERGGASLLATRGVSAPAEGLEAPSRRREEDSREALSAGLADVCLALGEPEEALAALRAATGVLPRRPGPWLRRAALERRLAALGGDPGQAGRPASGXXXXXXXXXXXXXXXXXADVAAATLRAGIKAVSPAAPGYPDLWRELLASLVASGAGHSKKGKTAVAAAFREAVEACGGGSAGNN-AQGEFLAGYVRWSAAVEGPDAARRALQWARRSFLLTGTGAAAAYGEAIELERALGEEAGEEGT----------RAKRVRELFEDSVDKFGRELPAIWEEYAQFEIQEGNVKRANAVRWRSQQQQ 651
[Close]
BLAST of mRNA_S-dermatodea_contig8977.17057.1 vs. uniprot
Match: A0A835YXJ8_9STRA (U3 small nucleolar RNA-associated protein 6-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXJ8_9STRA)

HSP 1 Score: 272 bits (696), Expect = 2.360e-76
Identity = 176/416 (42.31%), Postives = 233/416 (56.01%), Query Frame = 1 
Query:    1 TQTETRSIAAKRREFEYMLRRHEARRLDFLRYAEHELRLESLRSIRTKRIESGQXXXXXXXXXXXXXXXXXNGTSASDYSCVRLVRSIFDRAVMKFPGDVDLWLRYIEFAAGQGQTKTLGRLFARALQLHPRNAGLWIKAASWEMFDSGNSSSARALMQRGLRINPGSRSLLLQYFRLEFCYVQKLAGRREVLGL-----EGGDGXXXXXXXXGIGDAELGVEV-----DGESAGRESMDIPELEAEEGQGGDTSLDGVKQAAEAAAAARAARPAPVMNDISRRFYKGAVPLAVFRAAIKAVPGDVGFRADFLRCCATDFPSLGDEVAEAILTSIAQDFPESCEAWEVRALHPLLAAQGKGKGFRQEGAAAAGGTGDGVVQ---ECVNVFELAVEAVGAREPGMWVRYSAFIRGRL 1209
            T+ E R+IAA+RR+ EY+ RR +AR++DFLRY E+EL LE LR IR K                                              KFPGDV L L++I+FAA Q  TK L R+F RALQLHP NAGLWIKAASWE FD  N+ +AR L+QR LRIN  ++ L +QYFRLE+CY+QK+ GR++VLGL     EGG+G         +GDA  G+++     +GES+G +   +   E EEG+              A+   R+A    VM+D +++FYKG VPLA+FRAA KA+P D+  R   L+ C T+FP L   V  AIL S+ +DFP S EAW +RA HPLL  QG    +  E  AA       VV    +C+  FE AV++       +W++YS F+  RL
Sbjct:   26 TREEVRAIAARRRDHEYLARRRQARKVDFLRYIEYELNLEILRKIRRK----------------------------------------------KFPGDVSLCLQHIDFAAKQTSTKILSRIFGRALQLHPHNAGLWIKAASWEFFDCANAVAARVLLQRALRINGVNQRLWVQYFRLEWCYLQKVIGRQQVLGLIEDDSEGGEG---------VGDAG-GLDIPEVQGEGESSGPDFSQVAAAEQEEGK--------------ASQKKRSASRQVVMSDATKQFYKGGVPLAIFRAARKALPDDIALRGHCLQVCCTEFPELSKHVQSAILDSLKEDFPASAEAWALRAQHPLLVLQG----YEDEDLAA-------VVDAEGQCIQAFEAAVKSSAGDGADIWLQYSQFLHARL 360
[Close]
BLAST of mRNA_S-dermatodea_contig8977.17057.1 vs. uniprot
Match: A0A485KQ44_9STRA (Aste57867_10082 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQ44_9STRA)

HSP 1 Score: 201 bits (511), Expect = 4.250e-51
Identity = 138/335 (41.19%), Postives = 179/335 (53.43%), Query Frame = 1 
Query:   10 ETRSIAAKRREFEYMLRRHEARRLDFLRYAEHELRLESLRSIRTKRIESGQXXXXXXXXXXXXXXXXXNGTSASDYSCVRLVRSIFDRAVMKFPGDVDLWLRYIEFAAGQGQTKTLGRLFARALQLHPRNAGLWIKAASWEMFDSGNSSSARALMQRGLRINPGSRSLLLQYFRLEFCYVQKLAGRREVLGLEGGDGXXXXXXXXGIGDAELGVEVDGESAGRE-SMDIPELEAEEGQGGDTSLDGVKQAAEAAAAARAARPAPVMNDISRRFYKGAVPLAVFRAAIKAVPGDVGFRADFLRCCATDFPSL-GDEVAEAILTSIAQDFPESCEAW 1008
            E R I  KRR+FEY ++R   R++D LRY E+EL L++LR  R KR+                       ++ SD++ +  V +IFDRA++K  GDVDLWL++I F   QG TK L  LF  ALQ+HPRN  LWI+AASWE   + N  SAR LMQR +RINP S+ L L+YFRLE  YVQKL  RREVLGL+                       D ++  +E S+DI  +E EE        D   +AA+A A A +A     + D  R    GA+P  VF  A++A+P D  FR  FL      FPS     VA+AIL S   +FP     W
Sbjct:   29 EVRQIVQKRRDFEYTMKRTPLRKVDCLRYIEYELNLDALRRQRKKRM-------------------GLKKSTLSDHTGISRVHNIFDRALLKHRGDVDLWLQHIAFCKNQGSTKILSLLFTHALQVHPRNEALWIEAASWEFATNLNVDSARVLMQRSIRINPHSQKLWLEYFRLELLYVQKLRARREVLGLD-----------------------DKKALPKELSLDIAPVEGEE--------DDASKAADAVADATSA-----VEDSRREILLGAIPKIVFHNAVQAIPSDAAFRLAFLDITNL-FPSAYAKPVADAILASATMEFPTDAAVW 307
[Close]
BLAST of mRNA_S-dermatodea_contig8977.17057.1 vs. uniprot
Match: A0A024UHP5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UHP5_9STRA)

HSP 1 Score: 197 bits (501), Expect = 8.770e-50
Identity = 130/336 (38.69%), Postives = 178/336 (52.98%), Query Frame = 1 
Query:    1 TQTETRSIAAKRREFEYMLRRHEARRLDFLRYAEHELRLESLRSIRTKRIESGQXXXXXXXXXXXXXXXXXNGTSASDYSCVRLVRSIFDRAVMKFPGDVDLWLRYIEFAAGQGQTKTLGRLFARALQLHPRNAGLWIKAASWEMFDSGNSSSARALMQRGLRINPGSRSLLLQYFRLEFCYVQKLAGRREVLGLEGGDGXXXXXXXXGIGDAELGVEVDGESAGRESMDIPELEAEEGQGGDTSLDGVKQAAEAAAAARAARPAPVMNDISRRFYKGAVPLAVFRAAIKAVPGDVGFRADFLRCCATDFPSLGDEVAEAILTSIAQDFPESCEAW 1008
            T+ E R I  KRR+FEY ++R   R++D LRY E+EL L++LR  R KR+                        S+SD++ ++ V +IFDRA+MK  GDVDLWL++I F    G +K L +LF  ALQLHPRN  LWI+AASWE   + N  SAR LMQR +R+NP S+ L L+YFRLEF YVQKL  RREVLGL+               D    +E+        S+DI  ++ E    G   +D + ++A+ +A          ++       +GA+P  V+R A  A+P D  FR  F+        + G  VA+ IL S   DFP     W
Sbjct:   26 TKEEVRQIVQKRRDFEYTMKRTPLRKVDCLRYIEYELNLDALRRQRKKRL-------------------GLQKQSSSDHTGMQRVHNIFDRALMKHRGDVDLWLQHIAFCKNTGSSKLLSKLFTNALQLHPRNETLWIEAASWEFSTNLNVDSARVLMQRSIRMNPHSKKLWLEYFRLEFLYVQKLRTRREVLGLDA--------------DTTKPLEL--------SLDIAPVKGE----GAAQVDAIAESAKESA----------VDKSRHEILQGAIPKIVYRNASHAIPNDAAFRLQFVSISNLFPATYGSPVAKVILESSLADFPTDAAVW 306
[Close]
BLAST of mRNA_S-dermatodea_contig8977.17057.1 vs. uniprot
Match: A0A6G0XVP7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVP7_9STRA)

HSP 1 Score: 194 bits (494), Expect = 6.680e-49
Identity = 127/327 (38.84%), Postives = 165/327 (50.46%), Query Frame = 1 
Query:   10 ETRSIAAKRREFEYMLRRHEARRLDFLRYAEHELRLESLRSIRTKRIESGQXXXXXXXXXXXXXXXXXNGTSASDYSCVRLVRSIFDRAVMKFPGDVDLWLRYIEFAAGQGQTKTLGRLFARALQLHPRNAGLWIKAASWEMFDSGNSSSARALMQRGLRINPGSRSLLLQYFRLEFCYVQKLAGRREVLGLEGGDGXXXXXXXXGIGDAELGVEVDGESAGRESMDIPELEAEEGQGGDTSLDGVKQAAEAAAAARAARPAPVMNDISRRFYKGAVPLAVFRAAIKAVPGDVGFRADFLRCCATDFPSLGDEVAEAILTSIAQDFP 990
            E R I  KRR+FEY ++R   R++D LRY E+E+ L++LR  R KR+                        S SD++ ++ V +IFDRA+MK  GDVDLWL++I F    G TK + +LF +ALQLHPRN  +WI+AASWE   + N  SAR LMQR +RINP S+ L  +YFRLE  YVQKL  RREVLGL+                               ++DI  +E EE              A  AA    A     +         GA+P  VF+ A++A+P D  FR DFL  C    P     VA+ IL S   DFP
Sbjct:   29 EIRQIVQKRRDFEYTMKRTPLRKVDCLRYIEYEINLDALRRQRKKRM-------------------GLQKKSLSDFAGMQRVHNIFDRALMKHRGDVDLWLQHIAFCKNTGSTKIMSKLFTKALQLHPRNEAIWIEAASWEFASNLNVDSARVLMQRSIRINPHSKKLWHEYFRLELLYVQKLRARREVLGLDA-------------------------KPQESTLDIAPVEGEE-------------VASGAATDAVAEETSAVEKSRHEILHGAIPKIVFQNAVQAIPQDAVFRLDFLTICNLFPPVYAKPVADVILESAGADFP 298
[Close]
BLAST of mRNA_S-dermatodea_contig8977.17057.1 vs. uniprot
Match: W4H669_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H669_9STRA)

HSP 1 Score: 194 bits (492), Expect = 1.280e-48
Identity = 128/336 (38.10%), Postives = 173/336 (51.49%), Query Frame = 1 
Query:    1 TQTETRSIAAKRREFEYMLRRHEARRLDFLRYAEHELRLESLRSIRTKRIESGQXXXXXXXXXXXXXXXXXNGTSASDYSCVRLVRSIFDRAVMKFPGDVDLWLRYIEFAAGQGQTKTLGRLFARALQLHPRNAGLWIKAASWEMFDSGNSSSARALMQRGLRINPGSRSLLLQYFRLEFCYVQKLAGRREVLGLEGGDGXXXXXXXXGIGDAELGVEVDGESAGRESMDIPELEAEEGQGGDTSLDGVKQAAEAAAAARAARPAPVMNDISRRFYKGAVPLAVFRAAIKAVPGDVGFRADFLRCCATDFPSLGDEVAEAILTSIAQDFPESCEAW 1008
            T+ E R I  KRR+FEY ++R   R++D LRY E+EL L++LR  R KR+                        S SD+S ++ V +IFDRA+MK  GDVDLWL++I F    G +K L +LF  ALQLHPRN  +WI+AA+WE   + N  SAR L+QR +RINP S+ L L+YFRLEF YVQKL  RREVLGL+                       +       S+DI  ++ E     D  +D    +  +   +R            +   +GA+P  VFR AI+A+P +  FR  F+  C     + G  VA+ IL S   DFP     W
Sbjct:   26 TKDEVRQIVQKRRDFEYTMKRTPLRKVDCLRYIEYELNLDALRRQRKKRM-------------------GLTKLSLSDHSGMQRVHNIFDRALMKHRGDVDLWLQHIAFCKNTGSSKLLSKLFTNALQLHPRNEAIWIEAAAWEFATNLNVDSARVLLQRSIRINPHSQKLWLEYFRLEFLYVQKLRTRREVLGLD----------------------TEKTKPKELSLDIAPVDGE-----DAPIDATTDSESSTEKSR------------QEILQGAIPKIVFRNAIQAIPQNAAFRLAFIAICNLFPATYGHPVAKFILDSTLADFPNDATVW 303
[Close]
BLAST of mRNA_S-dermatodea_contig8977.17057.1 vs. uniprot
Match: A0A433Q7W8_9FUNG (U3 small nucleolar RNA-associated protein 6-domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q7W8_9FUNG)

HSP 1 Score: 181 bits (460), Expect = 3.620e-46
Identity = 128/337 (37.98%), Postives = 186/337 (55.19%), Query Frame = 1 
Query:    1 TQTETRSIAAKRREFEYMLRRHEARRLDFLRYAEHELRLESLRSIRTKRIESGQXXXXXXXXXXXXXXXXXNGTSASDYSCVRLVRSIFDRAVMKFPGDVDLWLRYIEFAAGQGQTKTLGRLFARALQLHPRNAGLWIKAASWEMFDSGNSSSARALMQRGLRINPGSRSLLLQYFRLEFCYVQKLAGRREVLGLEGGDGXXXXXXXXGIGDA-ELGVEVDGESAGRESMDIPELEAEEGQGGDTSLDGVKQAAEAAAAARAARPAPVMNDISRRFYKGAVPLAVFRAAIKAVPGDVGFRADFLRCCATDFPSLGDEVAEA-ILTSIAQDFPESCEA 1005
            ++ E +SI  KR +FEY L+R  ++++D+LRYAE+E+ LE+LR  R  R++                    N TS SDY+ VR +  IF+R + KF GDV LWL+YIEFA G G ++TLG++FA A+Q+HP    LWI AASWE  ++ N  +AR LMQRGLR+N  S SL  +YFRLE  YV+K+  RR++LG++            G  DA +  + +  +  G E +D  +   E+G         V++  E+   A      PV+  +  R         V+R AI A+P ++ FR  F+   A DF     E+ E  I  SI +DFP++ EA
Sbjct:   26 SKAEIKSIVKKRTKFEYALKRRISKKVDYLRYAEYEMNLEALRKKRKVRLD-----------------IKSNKTSLSDYAGVRRIYFIFERVLRKFKGDVALWLQYIEFAKGNGASRTLGKIFASAIQMHPTKPSLWIMAASWEFEENANIVAARVLMQRGLRLNSTSTSLWHEYFRLELVYVEKIKARRKILGIDQRSQSTLEELEAGQTDANDDNMIMLPKITGEEFVDEADETGEKGA--------VRKMEESMVEALKENNNPVLEGLLGRI--------VYRNAIVAIPNNLPFRKKFIDIYA-DFSDT--EMGEQEIYESIRRDFPQNTEA 326
[Close]
BLAST of mRNA_S-dermatodea_contig8977.17057.1 vs. uniprot
Match: A0A067CUV9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CUV9_SAPPC)

HSP 1 Score: 186 bits (472), Expect = 4.390e-46
Identity = 121/342 (35.38%), Postives = 164/342 (47.95%), Query Frame = 1 
Query:   10 ETRSIAAKRREFEYMLRRHEARRLDFLRYAEHELRLESLRSIRTKRIESGQXXXXXXXXXXXXXXXXXNGTSASDYSCVRLVRSIFDRAVMKFPGDVDLWLRYIEFAAGQGQTKTLGRLFARALQLHPRNAGLWIKAASWEMFDSGNSSSARALMQRGLRINPGSRSLLLQYFRLEFCYVQKLAGRREVLGLEGGDGXXXXXXXXGIGDAELGVEVDGESAGRESMDIPELEAEEGQGGDTSLDGVKQAAEAAAAARAARPAPVMNDISRRFYKGAVPLAVFRAAIKAVPGDVGFRADFLRCCATDFPSLGDEVAEAILTSIAQDFPESCEAWEVRALHPLL 1035
            E R I  KRR+FEY ++R   R++D LRY E+EL L++LR  R KR+                       T+ SD++ V  V +IF+RAV K  GD+DLWL++I +       K + +LF  ALQLHPRN  +WI+AASWE   + N  SAR LMQR +RINP S+ L  +YFRLEF YVQKL  RRE+LGL+               +  L +E   E A   + + P L A                               M +  +     A+P  V++ AI+A+P D  FR  F+  C     S    VA+ +LTS  +DF      W      P  
Sbjct:   29 EIRQIVQKRRDFEYTMKRQPLRKVDCLRYIEYELNLDALRRQRKKRM-------------------GLKKTTISDHAPVARVHNIFERAVNKHKGDIDLWLQHIAYCKNNASRKMMSKLFTSALQLHPRNEAIWIEAASWEFNTNLNMDSARVLMQRSIRINPHSQRLWAEYFRLEFLYVQKLRARRELLGLDA--------PVEKPKELSLDIETLDEEANLATDEAPALSA-------------------------------MEESRQAILNAAIPKIVYQNAIQAIPSDASFRLQFVEICHLFPTSYSKAVADIVLTSALEDFQTDATVWSAYCQQPAF 312
[Close]
BLAST of mRNA_S-dermatodea_contig8977.17057.1 vs. uniprot
Match: A0A1V9ZX16_9STRA (Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial-like n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZX16_9STRA)

HSP 1 Score: 191 bits (484), Expect = 4.610e-46
Identity = 126/345 (36.52%), Postives = 173/345 (50.14%), Query Frame = 1 
Query:    1 TQTETRSIAAKRREFEYMLRRHEARRLDFLRYAEHELRLESLRSIRTKRIESGQXXXXXXXXXXXXXXXXXNGTSASDYSCVRLVRSIFDRAVMKFPGDVDLWLRYIEFAAGQGQTKTLGRLFARALQLHPRNAGLWIKAASWEMFDSGNSSSARALMQRGLRINPGSRSLLLQYFRLEFCYVQKLAGRREVLGLEGGDGXXXXXXXXGIGDAELGVEVDGESAGRESMDIPELEAEEGQGGDTSLDGVKQAAEAAAAARAARPAPVMNDISRRFYKGAVPLAVFRAAIKAVPGDVGFRADFLRCCATDFPSLGDEVAEAILTSIAQDFPESCEAWEVRALHPLL 1035
            T+ E R I  KRR+FEY ++R   R++D LRY E+EL L++LR  R KR+                       T+ SD++ +  V +IF+RA+MK  GD+DLWL++I F    G  K + +LF  ALQ+HPRN  +WI+AASWE   + N  SAR LMQR +RINP S+ L  +YFRLEF YVQKL  RREVLGL+                AE   E+        S+DI  L  E        L  ++Q+                    +    GA+P  +++ AIKA+P DV FR  F+        +    V + IL+S+  DFP+   AW      P  
Sbjct:  550 TKDEIRQIVQKRRDFEYTMKRQPLRKVDCLRYIEYELNLDALRRQRKKRM-------------------GLKKTTLSDHAPITRVHNIFERALMKHKGDIDLWLQHIAFCKNNGSRKLMSKLFTSALQMHPRNEAIWIEAASWEFTSNLNIDSARVLMQRSIRINPHSQRLWTEYFRLEFLYVQKLRVRREVLGLDA--------------PAEKPKEL--------SLDIEPLAEEPAXXXADKLSEMEQS-------------------RQEILNGAIPKIIYQNAIKAIPSDVQFRLKFVEISHLFPVNYSKSVTDLILSSLLADFPKDIAAWSAFCQQPAF 834
[Close]
BLAST of mRNA_S-dermatodea_contig8977.17057.1 vs. uniprot
Match: A0A433A2E5_9FUNG (U3 small nucleolar RNA-associated protein 6-domain-containing protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433A2E5_9FUNG)

HSP 1 Score: 183 bits (465), Expect = 4.200e-45
Identity = 144/408 (35.29%), Postives = 205/408 (50.25%), Query Frame = 1 
Query:    1 TQTETRSIAAKRREFEYMLRRHEARRLDFLRYAEHELRLESLRSIRTKRIESGQXXXXXXXXXXXXXXXXXNGTSASDYSCVRLVRSIFDRAVMKFPGDVDLWLRYIEFAAGQGQTKTLGRLFARALQLHPRNAGLWIKAASWEMFDSGNSSSARALMQRGLRINPGSRSLLLQYFRLEFCYVQKLAGRREVLGLEGGDGXXXXXXXXGIGDA-ELGVEVDGESAGRESMDIPELEAEEGQGGDTSLDGVKQAAEAAAAARAARPAPVMNDISRRFYKGAVPLAVFRAAIKAVPGDVGFRADFLRCCATDFPSLGDEVAEA-ILTSIAQDFPESCEAWEVRALHPLLAAQGKG-------KGFRQEGAAAAGGTGDGVVQECVNVFELAVEAVGAREPGMWVRYSAFI 1197
            ++ E +SI  KR +FEY L+R  ++++D+LRYAE+E+ LE+LR  R  R++                    N TS SDY+ VR +  IF+R + KF GDV LWL+YIEFA G G ++TLG++FA A+Q+HP    LWI AASWE  ++ N  +AR LMQRGLR+N  S SL  +YFRLE  YV+K+  RR++LG++            G  DA +  + +  +  G E +D  +   E+G         V++  E+   A      PV+  +  R         V+R AI A+P ++ FR  F+   A DF     E+ E  I  SI +DFP++ EA    A   L  A           KG R                 CV  F   VE +   E  MW  Y+ F+
Sbjct:   26 SKAEIKSIVKKRTKFEYALKRRISKKVDYLRYAEYEMNLEALRKKRKVRLD-----------------IKSNKTSLSDYAGVRRIYFIFERVLRKFKGDVALWLQYIEFAKGNGASRTLGKIFASAIQMHPTKPSLWIMAASWEFEENANIVAARVLMQRGLRLNSTSTSLWHEYFRLELVYVEKIKARRKILGIDQRSQSTLEELEAGQTDANDDNMIMLPKITGEEFVDEADETGEKGA--------VRKMEESMVEALKENNNPVLEGLLGRI--------VYRNAIVAIPNNLPFRKKFIDIYA-DFSDT--EMGEQEIYESIRRDFPQNTEARSYLAARHLSRANEVDVENPEFVKGLRS----------------CVEEFGRCVEELPTSE--MWEHYTRFL 379
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8977.17057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJQ2_9PHAE1.740e-19555.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YXJ8_9STRA2.360e-7642.31U3 small nucleolar RNA-associated protein 6-domain... [more]
A0A485KQ44_9STRA4.250e-5141.19Aste57867_10082 protein n=1 Tax=Aphanomyces stella... [more]
A0A024UHP5_9STRA8.770e-5038.69Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0XVP7_9STRA6.680e-4938.84Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4H669_9STRA1.280e-4838.10Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]
A0A433Q7W8_9FUNG3.620e-4637.98U3 small nucleolar RNA-associated protein 6-domain... [more]
A0A067CUV9_SAPPC4.390e-4635.38Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZX16_9STRA4.610e-4636.52Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1... [more]
A0A433A2E5_9FUNG4.200e-4535.29U3 small nucleolar RNA-associated protein 6-domain... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8977contigS-dermatodea_contig8977:2507..8892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score716.5
Seed ortholog evalue1.4e-203
Seed eggNOG ortholog2880.D8LSS2
KEGG koko:K14557
KEGG Pathwayko03008,map03008
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.snoRNA binding
EggNOG OGsCOG5191@1,KOG2396@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-15_002810.1
Exons3
Model size2824
Cds size2298
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8977.17057.1prot_S-dermatodea_contig8977.17057.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8977 2982..8841 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925376.0463982-UTR-S-dermatodea_contig8977:2506..29811622925376.0463982-UTR-S-dermatodea_contig8977:2506..2981Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8977 2507..2981 -
1694079891.253411-UTR-S-dermatodea_contig8977:2506..29811694079891.253411-UTR-S-dermatodea_contig8977:2506..2981Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8977 2507..2981 -
1622925376.0967348-UTR-S-dermatodea_contig8977:8841..88921622925376.0967348-UTR-S-dermatodea_contig8977:8841..8892Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8977 8842..8892 -
1694079891.3050416-UTR-S-dermatodea_contig8977:8841..88921694079891.3050416-UTR-S-dermatodea_contig8977:8841..8892Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8977 8842..8892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925376.0599303-CDS-S-dermatodea_contig8977:2981..31161622925376.0599303-CDS-S-dermatodea_contig8977:2981..3116Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8977 2982..3116 -
1694079891.275637-CDS-S-dermatodea_contig8977:2981..31161694079891.275637-CDS-S-dermatodea_contig8977:2981..3116Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8977 2982..3116 -
1622925376.073564-CDS-S-dermatodea_contig8977:5306..71691622925376.073564-CDS-S-dermatodea_contig8977:5306..7169Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8977 5307..7169 -
1694079891.2854536-CDS-S-dermatodea_contig8977:5306..71691694079891.2854536-CDS-S-dermatodea_contig8977:5306..7169Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8977 5307..7169 -
1622925376.084927-CDS-S-dermatodea_contig8977:8541..88411622925376.084927-CDS-S-dermatodea_contig8977:8541..8841Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8977 8542..8841 -
1694079891.2946496-CDS-S-dermatodea_contig8977:8541..88411694079891.2946496-CDS-S-dermatodea_contig8977:8541..8841Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8977 8542..8841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8977.17057.1

>prot_S-dermatodea_contig8977.17057.1 ID=prot_S-dermatodea_contig8977.17057.1|Name=mRNA_S-dermatodea_contig8977.17057.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=766bp
MLRRHEARRLDFLRYAEHELRLESLRSIRTKRIESGQGGGGGGVGGAEKK
KRKKNGTSASDYSCVRLVRSIFDRAVMKFPGDVDLWLRYIEFAAGQGQTK
TLGRLFARALQLHPRNAGLWIKAASWEMFDSGNSSSARALMQRGLRINPG
SRSLLLQYFRLEFCYVQKLAGRREVLGLEGGDGGGGGGAAGGIGDAELGV
EVDGESAGRESMDIPELEAEEGQGGDTSLDGVKQAAEAAAAARAARPAPV
MNDISRRFYKGAVPLAVFRAAIKAVPGDVGFRADFLRCCATDFPSLGDEV
AEAILTSIAQDFPESCEAWEVRALHPLLAAQGKGKGFRQEGAAAAGGTGD
GVVQECVNVFELAVEAVGAREPGMWVRYSAFIRGRLESRAQGEGGRESEE
GGNKKRRKGGRDEVTADLVGGGGGIEGGVSETVAAAVALQLQQVLTRAVK
AHLSGNRDPTDGSPPPPTAAQRRAAATTIATTAAGAGGDTEDRHEKTRRA
EDAREALSAGLADVCLAQGEPGLALEALRAATACLPSRAGPWLRRAALER
RLASLGLGPSPPSSSPTVAAAEGRTTAIATATLQEGLKSVPPTAAEYPKV
WRELLGTLVAAGAGKKAIAAAFRAAVGACDPTGADEGIAQGEFLAGYLRW
SASAEGAEAARGALRWARRSFLLAGTGAAAAYGEAIELERTVSADGGAAV
AAAAAAASGGGRVKRVRELYEDAVDKFGESMPTIWNEYAEFETQEGDIKR
ANAVRWRARQRQASR*
back to top

mRNA from alignment at S-dermatodea_contig8977:2507..8892-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8977.17057.1 ID=mRNA_S-dermatodea_contig8977.17057.1|Name=mRNA_S-dermatodea_contig8977.17057.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6386bp|location=Sequence derived from alignment at S-dermatodea_contig8977:2507..8892- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGCAGACCGAAACCCGCTCCATTGCCGCAAAGCGGAGGGAGTTCGAGTA
CATGCTGCGCCGCCACGAGGCTCGCAGGCTGGACTTCTTGCGGTACGCGG
AGCACGAGCTTCGCCTAGAGTCGCTGCGCTCTATTCGCACCAAGCGCATC
GAGAGCGGGCAAGGCGGTGGCGGCGGCGGGGTCGGGGGTGCGGAGAAGAA
GAAGAGAAAGAAGAACGGGACGTCGGCGTCGGACTACTCGTGCGTGCGGC
TGGTGCGTTCGATTTTCGACCGGGCGGTGATGAAGTTTCCCGGGGATGTG
GACCTCTGGCTGCGGTACATCGAGTTCGCTGCTGGGCAGGGGCAGACCAA
GGTGGGTGTTGTGCCGTCTTGTGTGTGTGTGTGTGGCCGGGGGGGGGGGG
GGGGGGGGGGGGGATACATGACATGAAACCATAGCATCATACACAACAAG
TGAGCCCCTCCATAGGTGTAGCTTGGACCATTTTCCCTTTTGAAAAGGTG
GGACCCGAACGCTCGCTCTGTCTTTGACATCCTTTTATTTTAGGGAGTTG
CAACCACCTTCAATGTATCCTATTGTTAATAGTATAGTACAGCTGTAGTA
CAGGTTGGACCGTTTATCATTGAGCAGAACGCCGACCTCCATTGCGCCAG
CTTTGGCCACCTTGCCTCTCTACAAGACAGGTGTCCCAATGCTCGCTGTG
TCTTGTATGTACGAACGAACCTTTTCTTGTTTCAGGGAGATGATTGTGTT
TCAGTGTGATGGCCTATCGTATGCGGAATGGGCCCTGGAAATGTATAGGA
TTAAGAGTTCAAAATGTATCAACCTTTTTTTGCAGGATTTTCAAGCTACA
CTTGGATTATATGTGGCTCCCGACGCCCACACTGTCGAACGCACATCCGT
ACCCCTCCTTGCGGGTTAGGGTTACAGTTTTGGTTACAGTATTCTTAAGG
TTAAGGGTTATTCTGGTAGGGTTACGACTTTATTAAGTACAAAGTTTTGC
GAAGTTTTGCCTACAGAGTATTTGTGTTTGTGTTTGTTGTCTCCGTGCTT
GTGCTTCTGCTCCCGCGTGCCGTATGATAGTGCTTGTGTGTTTTGCTTGC
AGCGGTTGTGAAACACGGCAGACACCTTAGCGCGCATTCGACCGGCGCCA
GCTCTCCGAGCGCCGCTCGTCTGTGATGGGCCGCTAGGGAGGGAGTCGAA
ATTACCATTCTTCTTCTGGCCCTATGTATACCAGTACACATGTCTGGAGA
CGTTTCGCGCAAAATTTTCAATCACGGTACATCGCCGCTAACCCCCACGT
CCATAGAGCCCTGCGCCCCGGCATCTCCCCCCCCCCCCCCCCCCAACTCC
CGTTGTGTCCAATCAACCCATGCCATATCGGTTGGCGTCGCAAACGCAAG
GGTGATGACTAGTAACTGGTATCATATCATCCTTGCGAAACGCCGCCTGG
GCCAGCGAAAATCCGGCATATCATTCCGTCCCGGCATTGTTGGATCGCAT
GGTCTACGTCAGTTTGGATACGACACGCGTTTAACATAAGTACTCAAGTA
CCCCTCTAAAAAAGTAAATATTTCAGAAACATAGAGCGAGCGTTGGGGTC
CCACCTTTTCAAGAGGGAAGATGGTCCAAGCTGGATCTATGGAGGCTCAA
GTACCCCCCCCCCCCTTAACCATAACCCTATCCCTAACCCCCCCCCTCCC
CTCCGCCCTCCCGTTACCATCAGACACTCGGAAGGCTCTTCGCCCGCGCA
CTCCAGCTGCACCCCCGCAACGCCGGGCTCTGGATCAAAGCGGCCAGTTG
GGAGATGTTCGACTCCGGAAACTCCTCCTCCGCGCGCGCCCTCATGCAGC
GGGGGCTGCGGATCAACCCGGGGTCCCGAAGCCTCCTGCTCCAGTACTTC
CGGCTGGAGTTCTGCTATGTGCAGAAGCTCGCCGGCAGGCGAGAGGTGCT
GGGTTTGGAGGGGGGAGATGGCGGTGGTGGTGGCGGTGCTGCCGGGGGGA
TCGGGGACGCGGAGCTTGGCGTCGAGGTGGACGGTGAAAGCGCGGGGCGG
GAAAGCATGGACATACCCGAGCTGGAGGCGGAGGAAGGACAGGGCGGGGA
CACCAGCTTGGACGGCGTGAAACAGGCGGCCGAGGCCGCTGCCGCTGCGA
GAGCCGCGCGCCCGGCCCCCGTGATGAACGACATCTCGCGGCGGTTCTAC
AAGGGAGCCGTGCCGCTCGCCGTGTTCCGCGCGGCGATCAAGGCGGTGCC
CGGAGACGTGGGATTCCGAGCGGATTTTCTCCGATGCTGCGCGACGGATT
TCCCCTCTCTGGGAGATGAGGTCGCGGAAGCCATCCTTACCTCCATCGCG
CAAGATTTCCCGGAGAGCTGTGAGGCGTGGGAGGTGCGAGCGTTGCACCC
GCTCCTCGCTGCGCAAGGGAAGGGGAAGGGTTTCCGCCAGGAGGGTGCCG
CCGCCGCGGGGGGTACCGGGGATGGGGTGGTGCAGGAGTGCGTGAATGTT
TTCGAGCTCGCCGTTGAGGCGGTCGGGGCCCGAGAGCCTGGGATGTGGGT
GCGGTACTCGGCTTTCATTCGGGGTAGGCTCGAGTCCCGGGCGCAGGGGG
AAGGGGGAAGGGAGAGCGAGGAGGGAGGGAACAAGAAGAGACGAAAAGGT
GGCCGTGACGAGGTTACGGCCGACCTTGTTGGCGGCGGCGGCGGAATCGA
GGGAGGAGTATCCGAGACCGTCGCCGCTGCCGTCGCGCTTCAGCTTCAGC
AGGTTCTCACTCGGGCGGTGAAGGCACACCTGAGCGGCAACAGAGACCCC
ACTGACGGGTCTCCTCCTCCTCCGACGGCCGCGCAGAGGCGCGCGGCAGC
AACCACCATCGCCACGACAGCGGCGGGAGCCGGCGGCGATACCGAAGATC
GCCACGAGAAAACTCGCCGAGCGGAGGACGCCCGAGAGGCCCTCTCCGCA
GGGCTAGCGGATGTCTGCCTCGCGCAGGGAGAGCCCGGCCTCGCCCTGGA
GGCCCTCCGCGCCGCAACGGCGTGCCTGCCGTCGCGAGCGGGGCCCTGGC
TTCGCCGGGCGGCTCTCGAGCGGCGGCTCGCCTCGCTCGGCCTCGGACCC
TCGCCTCCATCCTCTTCGCCTACGGTGGCGGCGGCAGAGGGGAGAACAAC
CGCGATCGCGACGGCCACCCTCCAGGAAGGGCTAAAGTCCGTCCCGCCCA
CCGCGGCGGAGTACCCGAAGGTCTGGAGGGAGCTCCTGGGAACCCTCGTG
GCGGCCGGGGCCGGGAAAAAAGCGATAGCCGCGGCGTTCCGCGCCGCCGT
GGGGGCGTGCGACCCAACGGGAGCGGACGAGGGGATCGCGCAGGGGGAGT
TTCTGGCGGGATATTTGCGGTGGAGTGCTTCCGCTGAAGGCGCGGAGGCC
GCGCGCGGTGCGTTGCGCTGGGCGAGGCGGTCATTCTTGCTTGCGGGGAC
CGGTGCGGCGGCAGCTTACGGCGAGGCGATCGAGTTGGAAAGGACGGTTT
CGGCGGATGGCGGGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGTCCGGG
GGTGGAAGAGTGAAGCGCGTCAGGGAGCTGTATGAAGTGAGTTTTTTGTG
TGTGTGTTGGTGTACTGCTGTGTGTATAGTGTGTTTGGTGGCTGGGCGCG
TTTCTTCGTGCCCCCCTATTAATACTGTTTTTGTGTGGCTTCGCGGCCAG
TCGTTTTTTTCAGATTGGGGAGGGGTTTTGTCTGCGGGTCGAGGTTGTGG
GTTGTCTTAGACCGCGGCGGTACGGGGTCTGCGGTTTGTTGATTTGAGTT
GATTGATTCGCGCAACGTATGGCCGGGTCGCTTTCGGGGCTCAACTTGTG
GTGGTCAGATGCGCAAAGAGTCAAGGATCAACCTGACTTTACCTGGAATG
CTTATTTCCCACATAAAGAGCTCTACAGCACACAGGAGTACAGTAATACT
TGGTCTATTCGTACCTGCTCTGTATGATACAATTGTACAAATTAGCACGC
CACGACACAGGAGGAACCAGTTGCCGACGATGGCATGCTTCATAAAATTG
TAATGGAGTGCCCCCCCCCCCCCCCCGCCCCCCCACAACATCCCCCCCCC
CACGCTACCCCCCGCCCGCCCCCACCCTACAGAACCAAAACCNNNNNNNN
NNAGTCGCCCGCGCGCCAGGGGGGAGCCGCTGGGCGGCGGGGGCATCCTT
TAAAAAATTTTGAGGGGGGGCCCCCCCCCCCCCCCCTCCCACGCCCTTGA
AGGCAGCATTCTCGAAGGGGGGTGACTAACTGGTTTCCACACTGCACCCT
ATCCTTGTTTGAAGGAATACCAGGGTACGCTCCAGTACGATTCTCCCTCC
CGTGAGTCGAGATGCTCCGGGATTCATTGTCTTGCGGGTTCCTCGGGTAT
TCCCGTGCCCCCCCCCCCCACCCCCCCCCCCCACTCCCTTTCCCCACCCC
CCACGGACTAACGCATGGCCCAGCTACTTGTGAGTAACTAATTTGTTGCG
GTCTGTTGACCATGCTCCACCGAAAGAGCGTCCGTTGCTCTCTCACCTTA
CACGACCGACGTCCAACGCGGTCAAGAGACCAGGTGACTAAAATATCCCC
GCGAAAAAACACGAACTAGGGAGGTACAGAGTAATCAGGACCAAAATTCT
GCTCAATGCTTGTAGGGTATTCGAGTTATTCGAGTCTTGTTTTTAATGTC
GGCTCGGACACCATTATTTTTTTGTATAATTTTTTATTTTGACGACTACA
GTAGTAGGTAATACTATCCACGGCTAGGCTACGCCGTGAAGTGAGAAATC
CTACTCTTTTCAAAATGGCGTCGAAATCGTTTACTGGTAGGATTTAGTAC
GAAATTCGGCCTCAAGTCGTGTGGAAGTTTAGTGCGGCGTTGCTGTGGTG
GTTCCACACTAAAAACGCTTTAAAAAAACGTTTGAAACGCTCTTCATTAA
TAAAGATAAGTTGCGGATGTTGCGAAAGGCCAGGGCCAGACCAGATTAAT
TCCTGGTTTGATATGTTCGGTATACTTTTTGGGAAATTTTGTCGTCGTTT
ACTACTACAGTCTGTATATCTGCAAAATATGTTTTTTTTTCCATTCGTTT
TGCTCCCGGTATTTTTGTATATCGGCTGTTCTACTTCTGAGCCGCATTTT
TTGTTTTTTTTCAAATGCGCACGTGCTTACGATAGCGAGAGGTGACGAAT
CAACCCCACTGCGGACGGTCCAAAAAGAAAAAACGAGATGATATGATACG
ACCAGCCATCTATCTATCCATTCGTTCCATCTCATTCATCCCTCCATCCA
TCAAGCCAAGCGATTATATTCTACAATCGGCCGATCGAATCGATCTACTA
CTGTATTATACTATTATATTATACTATTAATACTATACTATTGCGGAGGA
CCATAGGTAACAGGTCCAGATTTGCCACAAGCCCCAAACCTAGATAAACA
AATATAGGGTGGAATTACCCAGATTTCATGGTCGATATTTCTTGTATAAG
GCCATCCATATCTCGTGTTTTTCTTTCTTGACGAGAGTTTTGCTGTTGTT
TGGGCATTCATGGTATTATAGGAAAAGTACTACTGTAGTAATAGTAGGGT
ATTATATTAATGGTCGTCATATTTGATTACTATACTATACTATACTAGAG
CTGTGTTCATCCTCCGTAATAGTGCTGTATCCATCGCTCGCTTTATTTTC
TGACAATTTGCTTTCCTTTTCGTGCGTGTCGGATCGTCGGATCGCGTTTG
ATACGTGATTATCTATATAACTCCAGGACGCGGTTGACAAGTTCGGGGAG
AGCATGCCCACCATCTGGAACGAGTACGCCGAATTCGAGACTCAGGAGGG
GGACATCAAACGCGCCAACGCGGTGCGGTGGAGGGCTCGGCAGCGGCAGG
CCAGCCGCTAGCTCGGTCCATCACAGCAGCACCAGCAGTAGTAGCAAATC
CGTCAATTCTAAGATATCGCAGATACAATTGCTGTCCGTGACAGCAGGAG
CAGAGCAGCAGGAGCAGGAGACGCACCAATCCTAGGATATCGCAGCGTAA
GAAGGCGGTAGGGCTGGGCGTCATGGGCGATTCGTCTCAGCAGAAGGCGC
CGCCCGCTATGTAGAGGCACACGGTTTTGGCTGTGATAAACCGGGTTGGG
CGCAGTATTTTCTTCCAAGCATGTGGCGGGTAACAGCAGCACGTAGGGTC
ATAACCTAACAGATTTGCTGAATCCGTACAGCGAGTGACAGCAGTCGCTC
GTGGGCTGTTATTATGTTATTATCGCTTGTGGCGAGGTTACGATAGGATA
AACACAGAGAGTTAATTAATATTACACAAACACAGACACCCAAGCTGCCT
TCCTGTCAGCTTGTCGGTTAACACCTCAGAAAAACG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8977:2507..8892-

>mRNA_S-dermatodea_contig8977.17057.1 ID=mRNA_S-dermatodea_contig8977.17057.1|Name=mRNA_S-dermatodea_contig8977.17057.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4596bp|location=Sequence derived from alignment at S-dermatodea_contig8977:2507..8892- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGCGCCGCCACGAGGCTCGCAGGCTGGACTTCTTGCGGTACGCGGA
GCACGAGCTTCGCCTAGAGTCGCTGCGCTCTATTCGCACCAAGCGCATCG
AGAGCGGGCAAGGCGGTGGCGGCGGCGGGGTCGGGGGTGCGGAGAAGAAG
AAGAGAAAGAAGAACGGGACGTCGGCGTCGGACTACTCGTGCGTGCGGCT
GGTGCGTTCGATTTTCGACCGGGCGGTGATGAAGTTTCCCGGGGATGTGG
ACCTCTGGCTGCGGTACATCGAGTTCGCTGCTGGGCAGGGGCAGACCAAG
ATGCTGCGCCGCCACGAGGCTCGCAGGCTGGACTTCTTGCGGTACGCGGA
GCACGAGCTTCGCCTAGAGTCGCTGCGCTCTATTCGCACCAAGCGCATCG
AGAGCGGGCAAGGCGGTGGCGGCGGCGGGGTCGGGGGTGCGGAGAAGAAG
AAGAGAAAGAAGAACGGGACGTCGGCGTCGGACTACTCGTGCGTGCGGCT
GGTGCGTTCGATTTTCGACCGGGCGGTGATGAAGTTTCCCGGGGATGTGG
ACCTCTGGCTGCGGTACATCGAGTTCGCTGCTGGGCAGGGGCAGACCAAG
ACACTCGGAAGGCTCTTCGCCCGCGCACTCCAGCTGCACCCCCGCAACGC
CGGGCTCTGGATCAAAGCGGCCAGTTGGGAGATGTTCGACTCCGGAAACT
CCTCCTCCGCGCGCGCCCTCATGCAGCGGGGGCTGCGGATCAACCCGGGG
TCCCGAAGCCTCCTGCTCCAGTACTTCCGGCTGGAGTTCTGCTATGTGCA
GAAGCTCGCCGGCAGGCGAGAGGTGCTGGGTTTGGAGGGGGGAGATGGCG
GTGGTGGTGGCGGTGCTGCCGGGGGGATCGGGGACGCGGAGCTTGGCGTC
GAGGTGGACGGTGAAAGCGCGGGGCGGGAAAGCATGGACATACCCGAGCT
GGAGGCGGAGGAAGGACAGGGCGGGGACACCAGCTTGGACGGCGTGAAAC
AGGCGGCCGAGGCCGCTGCCGCTGCGAGAGCCGCGCGCCCGGCCCCCGTG
ATGAACGACATCTCGCGGCGGTTCTACAAGGGAGCCGTGCCGCTCGCCGT
GTTCCGCGCGGCGATCAAGGCGGTGCCCGGAGACGTGGGATTCCGAGCGG
ATTTTCTCCGATGCTGCGCGACGGATTTCCCCTCTCTGGGAGATGAGGTC
GCGGAAGCCATCCTTACCTCCATCGCGCAAGATTTCCCGGAGAGCTGTGA
GGCGTGGGAGGTGCGAGCGTTGCACCCGCTCCTCGCTGCGCAAGGGAAGG
GGAAGGGTTTCCGCCAGGAGGGTGCCGCCGCCGCGGGGGGTACCGGGGAT
GGGGTGGTGCAGGAGTGCGTGAATGTTTTCGAGCTCGCCGTTGAGGCGGT
CGGGGCCCGAGAGCCTGGGATGTGGGTGCGGTACTCGGCTTTCATTCGGG
GTAGGCTCGAGTCCCGGGCGCAGGGGGAAGGGGGAAGGGAGAGCGAGGAG
GGAGGGAACAAGAAGAGACGAAAAGGTGGCCGTGACGAGGTTACGGCCGA
CCTTGTTGGCGGCGGCGGCGGAATCGAGGGAGGAGTATCCGAGACCGTCG
CCGCTGCCGTCGCGCTTCAGCTTCAGCAGGTTCTCACTCGGGCGGTGAAG
GCACACCTGAGCGGCAACAGAGACCCCACTGACGGGTCTCCTCCTCCTCC
GACGGCCGCGCAGAGGCGCGCGGCAGCAACCACCATCGCCACGACAGCGG
CGGGAGCCGGCGGCGATACCGAAGATCGCCACGAGAAAACTCGCCGAGCG
GAGGACGCCCGAGAGGCCCTCTCCGCAGGGCTAGCGGATGTCTGCCTCGC
GCAGGGAGAGCCCGGCCTCGCCCTGGAGGCCCTCCGCGCCGCAACGGCGT
GCCTGCCGTCGCGAGCGGGGCCCTGGCTTCGCCGGGCGGCTCTCGAGCGG
CGGCTCGCCTCGCTCGGCCTCGGACCCTCGCCTCCATCCTCTTCGCCTAC
GGTGGCGGCGGCAGAGGGGAGAACAACCGCGATCGCGACGGCCACCCTCC
AGGAAGGGCTAAAGTCCGTCCCGCCCACCGCGGCGGAGTACCCGAAGGTC
TGGAGGGAGCTCCTGGGAACCCTCGTGGCGGCCGGGGCCGGGAAAAAAGC
GATAGCCGCGGCGTTCCGCGCCGCCGTGGGGGCGTGCGACCCAACGGGAG
CGGACGAGGGGATCGCGCAGGGGGAGTTTCTGGCGGGATATTTGCGGTGG
AGTGCTTCCGCTGAAGGCGCGGAGGCCGCGCGCGGTGCGTTGCGCTGGGC
GAGGCGGTCATTCTTGCTTGCGGGGACCGGTGCGGCGGCAGCTTACGGCG
AGGCGATCGAGTTGGAAAGGACGGTTTCGGCGGATGGCGGGGCGGCGGTG
GCGGCGGCGGCGGCGGCGGCGTCCGGGGGTGGAAGAGTGAAGCGCGTCAG
GGAGCTGTATGAAACACTCGGAAGGCTCTTCGCCCGCGCACTCCAGCTGC
ACCCCCGCAACGCCGGGCTCTGGATCAAAGCGGCCAGTTGGGAGATGTTC
GACTCCGGAAACTCCTCCTCCGCGCGCGCCCTCATGCAGCGGGGGCTGCG
GATCAACCCGGGGTCCCGAAGCCTCCTGCTCCAGTACTTCCGGCTGGAGT
TCTGCTATGTGCAGAAGCTCGCCGGCAGGCGAGAGGTGCTGGGTTTGGAG
GGGGGAGATGGCGGTGGTGGTGGCGGTGCTGCCGGGGGGATCGGGGACGC
GGAGCTTGGCGTCGAGGTGGACGGTGAAAGCGCGGGGCGGGAAAGCATGG
ACATACCCGAGCTGGAGGCGGAGGAAGGACAGGGCGGGGACACCAGCTTG
GACGGCGTGAAACAGGCGGCCGAGGCCGCTGCCGCTGCGAGAGCCGCGCG
CCCGGCCCCCGTGATGAACGACATCTCGCGGCGGTTCTACAAGGGAGCCG
TGCCGCTCGCCGTGTTCCGCGCGGCGATCAAGGCGGTGCCCGGAGACGTG
GGATTCCGAGCGGATTTTCTCCGATGCTGCGCGACGGATTTCCCCTCTCT
GGGAGATGAGGTCGCGGAAGCCATCCTTACCTCCATCGCGCAAGATTTCC
CGGAGAGCTGTGAGGCGTGGGAGGTGCGAGCGTTGCACCCGCTCCTCGCT
GCGCAAGGGAAGGGGAAGGGTTTCCGCCAGGAGGGTGCCGCCGCCGCGGG
GGGTACCGGGGATGGGGTGGTGCAGGAGTGCGTGAATGTTTTCGAGCTCG
CCGTTGAGGCGGTCGGGGCCCGAGAGCCTGGGATGTGGGTGCGGTACTCG
GCTTTCATTCGGGGTAGGCTCGAGTCCCGGGCGCAGGGGGAAGGGGGAAG
GGAGAGCGAGGAGGGAGGGAACAAGAAGAGACGAAAAGGTGGCCGTGACG
AGGTTACGGCCGACCTTGTTGGCGGCGGCGGCGGAATCGAGGGAGGAGTA
TCCGAGACCGTCGCCGCTGCCGTCGCGCTTCAGCTTCAGCAGGTTCTCAC
TCGGGCGGTGAAGGCACACCTGAGCGGCAACAGAGACCCCACTGACGGGT
CTCCTCCTCCTCCGACGGCCGCGCAGAGGCGCGCGGCAGCAACCACCATC
GCCACGACAGCGGCGGGAGCCGGCGGCGATACCGAAGATCGCCACGAGAA
AACTCGCCGAGCGGAGGACGCCCGAGAGGCCCTCTCCGCAGGGCTAGCGG
ATGTCTGCCTCGCGCAGGGAGAGCCCGGCCTCGCCCTGGAGGCCCTCCGC
GCCGCAACGGCGTGCCTGCCGTCGCGAGCGGGGCCCTGGCTTCGCCGGGC
GGCTCTCGAGCGGCGGCTCGCCTCGCTCGGCCTCGGACCCTCGCCTCCAT
CCTCTTCGCCTACGGTGGCGGCGGCAGAGGGGAGAACAACCGCGATCGCG
ACGGCCACCCTCCAGGAAGGGCTAAAGTCCGTCCCGCCCACCGCGGCGGA
GTACCCGAAGGTCTGGAGGGAGCTCCTGGGAACCCTCGTGGCGGCCGGGG
CCGGGAAAAAAGCGATAGCCGCGGCGTTCCGCGCCGCCGTGGGGGCGTGC
GACCCAACGGGAGCGGACGAGGGGATCGCGCAGGGGGAGTTTCTGGCGGG
ATATTTGCGGTGGAGTGCTTCCGCTGAAGGCGCGGAGGCCGCGCGCGGTG
CGTTGCGCTGGGCGAGGCGGTCATTCTTGCTTGCGGGGACCGGTGCGGCG
GCAGCTTACGGCGAGGCGATCGAGTTGGAAAGGACGGTTTCGGCGGATGG
CGGGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGTCCGGGGGTGGAAGAG
TGAAGCGCGTCAGGGAGCTGTATGAAGACGCGGTTGACAAGTTCGGGGAG
AGCATGCCCACCATCTGGAACGAGTACGCCGAATTCGAGACTCAGGAGGG
GGACATCAAACGCGCCAACGCGGTGCGGTGGAGGGCTCGGCAGCGGCAGG
CCAGCCGCTAGGACGCGGTTGACAAGTTCGGGGAGAGCATGCCCACCATC
TGGAACGAGTACGCCGAATTCGAGACTCAGGAGGGGGACATCAAACGCGC
CAACGCGGTGCGGTGGAGGGCTCGGCAGCGGCAGGCCAGCCGCTAG
back to top