mRNA_S-dermatodea_contig8974.17056.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8974.17056.1
Unique NamemRNA_S-dermatodea_contig8974.17056.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8974.17056.1 vs. uniprot
Match: D8LQ21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ21_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 1.030e-105
Identity = 162/206 (78.64%), Postives = 181/206 (87.86%), Query Frame = 1 
Query:    1 EKSYDGFARGYDDLDGGWVASAIGMEDLRSQLLARATGRVLEVGVGTGLNLQHYRRAVVSDIDAVDLSPGMLSQASAKSESLGMAGITRLQQMDVEDLKFPSRTFDTVVDTFSLCVFSNPAAALREMARVCKPTGRVLLLENSKSNFGPLAAYQDMTASYLADKGGAKGCFWNQDVEALAREAGLRVERSSAALPGGVFRALECVP 618
            ++SYDGFA GYD+LDGGW ASAIG+E+LRSQLLA ATGRVLEVGVGTGLNL+HYRR +VS I+AVDLSPGMLSQAS++SESLGM  + +L  MD E L FPS  FDTVVDTFSLCVFS+P+AALREMARVCKP GRVLLLENSKS+FGPLAAYQD+TAS+L +KGGAKGCFWNQDVEAL R AGL V RSS AL GG+FR LEC P
Sbjct:   37 KESYDGFAEGYDNLDGGWAASAIGLEELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSGIEAVDLSPGMLSQASSRSESLGMERLVKLSVMDAEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSDFGPLAAYQDLTASFLVNKGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLECAP 242
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BLAST of mRNA_S-dermatodea_contig8974.17056.1 vs. uniprot
Match: A0A6H5K3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H3_9PHAE)

HSP 1 Score: 312 bits (800), Expect = 1.610e-97
Identity = 160/206 (77.67%), Postives = 174/206 (84.47%), Query Frame = 1 
Query:    1 EKSYDGFARGYDDLDGGWVASAIGMEDLRSQLLARATGRVLEVGVGTGLNLQHYRRAVVSDIDAVDLSPGMLSQASAKSESLGMAGITRLQQMDVEDLKFPSRTFDTVVDTFSLCVFSNPAAALREMARVCKPTGRVLLLENSKSNFGPLAAYQDMTASYLADKGGAKGCFWNQDVEALAREAGLRVERSSAALPGGVFRALECVP 618
            ++SYDGFA GYDDLDGGW ASAIG+E       A ATGRVLEVGVGTGLNL+HYRR +VS I+AVDLSPGMLSQAS++SESLGM  +  L  MDVE L FPS  FDTVVDTFSLCVFS+P+AALREMARVCKP GRVLLLENSKSNFGPLAAYQD TAS+L +KGGAKGCFWNQDVEAL R AGL V RSS AL GG+FR LECVP
Sbjct:  281 KESYDGFAEGYDDLDGGWAASAIGLE-------ASATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGMLSQASSRSESLGMKRLVNLSVMDVEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSNFGPLAAYQDFTASFLVNKGGAKGCFWNQDVEALCRGAGLEVVRSSPALAGGLFRTLECVP 479
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BLAST of mRNA_S-dermatodea_contig8974.17056.1 vs. uniprot
Match: A0A836CG23_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG23_9STRA)

HSP 1 Score: 221 bits (563), Expect = 1.170e-65
Identity = 121/206 (58.74%), Postives = 140/206 (67.96%), Query Frame = 1 
Query:    1 EKSYDGFARGYDDLDGGWVASAIGMEDLRSQLLARATGRVLEVGVGTGLNLQHYRRAVVSDIDAVDLSPGMLSQASAKSESLGMAGITRLQQMDVEDLKFPSRTFDTVVDTFSLCVFSNPAAALREMARVCKPTGRVLLLENSKSNFGPLAAYQDMTASYLADKGGAKGCFWNQDVEALAREAGLRVERSSAALPGGVFRALECVP 618
            ++SYD FA  YD LDG  +A  +G++ LR  + + A GRVLEV VGTGLNL +YRR  VS IDAVDLSP ML+QA  +    G+  I    +MDVE LKF   TFDTVVDTF LCVF +P AALREM RVC   GRVLLLENSKS    L AYQD+TA  L+    +KGC WNQDVEALAR AGL V  S      G+FRA+EC P
Sbjct:   23 KQSYDTFASSYDGLDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQDLTAGALSRI--SKGCVWNQDVEALARSAGLTVVHSYKCA-AGLFRAVECTP 225
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BLAST of mRNA_S-dermatodea_contig8974.17056.1 vs. uniprot
Match: A0A7S0WEJ0_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0WEJ0_9CHLO)

HSP 1 Score: 186 bits (472), Expect = 7.050e-52
Identity = 98/197 (49.75%), Postives = 132/197 (67.01%), Query Frame = 1 
Query:    1 EKSYDGFARGYDDLDGGWVASAIGMEDLRSQLLARATGRVLEVGVGTGLNLQHYRRAVVSDIDAVDLSPGMLSQASAKSESLGMAG-ITRLQQMDVEDLKFPSRTFDTVVDTFSLCVFSNPAAALREMARVCKPTGRVLLLENSKSNFGPLAAYQDMTASYLADKGGAKGCFWNQDVEALAREAGLRVERSSAALPG 588
            +++YDG+A  YDDLDGG  A A+G++ +R   L  A+G VLE+ VGTGLNL  Y  + ++   A+DLSPGML+QA  +++ L      +R  + D   L F   +FD VVDTFSLCV  N  AALRE+ RV +P+GR +L+E+SKS+ GPL AYQD+T+  +  K  +KGC WNQDVE L RE+GL+V     AL G
Sbjct:   52 KRAYDGYASTYDDLDGGSAAKALGLDAMRGDALRGASGDVLELAVGTGLNLASYDMSKINTFTAIDLSPGMLAQAKVRADELNFRRESSRFIEADATALPFEDASFDVVVDTFSLCVIENSVAALREVRRVLRPSGRAVLIEHSKSDVGPLGAYQDLTSKPV--KSMSKGCVWNQDVEGLLRESGLKVVSVQRALLG 246
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BLAST of mRNA_S-dermatodea_contig8974.17056.1 vs. uniprot
Match: A0A836BNX8_9CHLO (Methyltransf_11 domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BNX8_9CHLO)

HSP 1 Score: 185 bits (469), Expect = 3.790e-51
Identity = 112/219 (51.14%), Postives = 143/219 (65.30%), Query Frame = 1 
Query:    1 EKSYDGFARGYDDLDGGWVASAIGMEDLRSQLLARATGRVLEVGVGTGLNLQHYR--------------RAV-----VSDIDAVDLSPGMLSQASAKSE-SLGMAGIT-RLQQMDVEDLKFPSRTFDTVVDTFSLCVFSNPAAALREMARVCKPTGRVLLLENSKSNFGPLAAYQDMTASYLADKGGAKGCFWNQDVEALAREAGLRVERSSAALPGGV 594
            +++YD +A  YD+LDGG  A A+G   LR QLLA+A GRVLEV VGTGLNL +Y                AV     VS ++AVDLSPGML QA  +++ S  ++G +   +Q DV  L +   +FD+VVDTFSLCVF +P  AL+EMARV +P+GRVLLLE+++S+   LAAYQD TA  +A  G  KGC WNQDVE LA  AGLRVE +  +  G V
Sbjct:   54 QQAYDRYAGSYDELDGGVAAEALGFPQLRQQLLAQARGRVLEVAVGTGLNLPYYSWDERSGAASGDEAAAAVAESRGVSSVEAVDLSPGMLDQARRRTQASPALSGRSISFRQADVTALPYGDDSFDSVVDTFSLCVFPDPGTALKEMARVVRPSGRVLLLEHTRSDNPLLAAYQDATAGPVAALG--KGCVWNQDVEGLAAAAGLRVEAAERSAAGTV 270
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BLAST of mRNA_S-dermatodea_contig8974.17056.1 vs. uniprot
Match: E1Z8H8_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z8H8_CHLVA)

HSP 1 Score: 182 bits (462), Expect = 6.330e-51
Identity = 101/198 (51.01%), Postives = 128/198 (64.65%), Query Frame = 1 
Query:    1 EKSYDGFARGYDDLDGGWVASAIGMEDLRSQLLARATGRVLEVGVGTGLNLQHYRRAVVSDIDAVDLSPGMLSQASAKSESLGMAGITRLQQMDVEDLK--FPSRTFDTVVDTFSLCVFSNPAAALREMARVCKPTGRVLLLENSKSNFGPLAAYQDMTASYLADKGGAKGCFWNQDVEALAREAGLRVERSSAALPG 588
            EK+YD +A  YD LDGG  A  +G   LR QLL RA G VLE  +GTGLNL  Y  A ++ + A+DLS GML++A  ++E LGMA   +L Q DVE L+     R FDTVVDTFSLCVF +P AA+REMA   +P G +LLLE+S+S FGPL  YQD+TA  +   G  KGC WN +V      AGL+++R    + G
Sbjct:    4 EKAYDRYAATYDLLDGGDAAEQLGFPALRQQLLRRAQGAVLETAIGTGLNLPFYDTAALASLTAIDLSSGMLARARQRAEQLGMADSVQLVQADVEHLQEALGGRAFDTVVDTFSLCVFPDPGAAIREMAACLRPGGVLLLLEHSRSEFGPLGWYQDVTAPAVMAAG--KGCRWNDNVSQHVEAAGLKIKRVERHVAG 199
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BLAST of mRNA_S-dermatodea_contig8974.17056.1 vs. uniprot
Match: A0A061R1H8_9CHLO (Methyltransferase type 11 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R1H8_9CHLO)

HSP 1 Score: 184 bits (468), Expect = 6.870e-51
Identity = 100/196 (51.02%), Postives = 124/196 (63.27%), Query Frame = 1 
Query:    1 EKSYDGFARGYDDLDGGWVASAIGMEDLRSQLLARATGRVLEVGVGTGLNLQHYRRAVVSDIDAVDLSPGMLSQASAKSESLGMAGITRLQQMDVEDLKFPSRTFDTVVDTFSLCVFSNPAAALREMARVCKPTGRVLLLENSKSNFGPLAAYQDMTASYLADKGGAKGCFWNQDVEALAREAGLRVERSSAALPG 588
            + +YD +A  YD+LD G  A  + + +LR  LL RA+G VLEVGVGTG+NL  Y +  VS +  VDLS GML +A  +   +G  G+  LQQ DVE L F   +FD VVDTFSLCV+ +P  ALREMARV +P G VLLL +++S F PLA YQD TA  +   G  +GC WNQDV  LA  AGL V      L G
Sbjct:   83 QAAYDRYASEYDELDDGMAADFLRLPELRRSLLRRASGNVLEVGVGTGINLPLYDKRKVSSVTGVDLSVGMLHEAEQRVRRIGSDGLVTLQQADVESLPFADSSFDAVVDTFSLCVYPDPLQALREMARVLRPGGSVLLLAHTRSTFTPLAVYQDATAQVVRRMG--RGCEWNQDVGGLAASAGLEVVEQERHLGG 276
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BLAST of mRNA_S-dermatodea_contig8974.17056.1 vs. uniprot
Match: K8YNM9_NANGC (Rrna (Guanine-n-)-methyltransferase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YNM9_NANGC)

HSP 1 Score: 194 bits (493), Expect = 8.130e-50
Identity = 111/208 (53.37%), Postives = 140/208 (67.31%), Query Frame = 1 
Query:    7 SYDGFARGYDDLDGGWVASAIGMEDLRSQLLARATGRVLEVGVGTGLNLQHYR----RAVVSDIDAVDLSPGMLSQASAKSESLGMA-GITRLQQMDVEDLKFPSRTFDTVVDTFSLCVFSNPAAALREMARVCKP-TGRVLLLENSKSNFGPLAAYQDMTASYLADKGGAKGCFWNQDVEALAREAGLRVERSSAALPGGVFRALEC 612
            +YD +A  YD LDGG  A  +G++  R +L+ RA G VLE GVGTGLNL  Y      A    +DA+DLSPGML +A +K+  L +     R ++MDV  + F   +FD V DTFSLCV+ +PA AL+EMARVCK  +GRVLLLENS+SN  P+AAYQD+TA  +A  GG KGC +NQDV +LAR+AGLRV  S   L GG+   LEC
Sbjct:  566 AYDEYASSYDGLDGGDAARFLGLDAARKELIGRARGHVLECGVGTGLNLPFYEFGSGSAPTVSLDAIDLSPGMLREARSKAAFLNLGPDAVRFREMDVAKMDFADESFDCVCDTFSLCVYLDPAQALKEMARVCKAESGRVLLLENSRSNLLPVAAYQDVTAGIVARYGG-KGCVYNQDVASLARQAGLRV-MSQKPLLGGLMTMLEC 771
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BLAST of mRNA_S-dermatodea_contig8974.17056.1 vs. uniprot
Match: A0A4D9D970_9STRA (THUMP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D970_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.050e-49
Identity = 109/208 (52.40%), Postives = 138/208 (66.35%), Query Frame = 1 
Query:    7 SYDGFARGYDDLDGGWVASAIGMEDLRSQLLARATGRVLEVGVGTGLNLQHYR----RAVVSDIDAVDLSPGMLSQASAKSESLGMA-GITRLQQMDVEDLKFPSRTFDTVVDTFSLCVFSNPAAALREMARVCKP-TGRVLLLENSKSNFGPLAAYQDMTASYLADKGGAKGCFWNQDVEALAREAGLRVERSSAALPGGVFRALEC 612
            +YD +A  YD LDGG  A  +G++  R  L+  A G +LE GVGTGLNL  Y      A    +DA+DLSPGML +A +K+  L +     R  +MDV  + F   +FD V DTFSLCV+ +PA AL+EMARVCK  +GRVLLLENS+SN  P+AAYQD+TA ++A  GG KGC +NQDV +LAR+AGLRV  S   L GG+   LEC
Sbjct:  548 AYDEYASSYDGLDGGDAARFLGLDAARKDLIGLARGHILECGVGTGLNLPFYEFGSGSAPAVSLDAIDLSPGMLREARSKAAFLNLGPDAVRFHEMDVAKMNFADESFDCVCDTFSLCVYLDPAKALKEMARVCKAVSGRVLLLENSRSNLLPVAAYQDVTAGFVARYGG-KGCVYNQDVASLARQAGLRV-MSQKPLLGGLITMLEC 753
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BLAST of mRNA_S-dermatodea_contig8974.17056.1 vs. uniprot
Match: A0A8J9WTP0_9CHLO (Probable ubiquinone/menaquinone biosynthesis C-methyltransferase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WTP0_9CHLO)

HSP 1 Score: 178 bits (451), Expect = 3.720e-49
Identity = 99/203 (48.77%), Postives = 129/203 (63.55%), Query Frame = 1 
Query:    1 EKSYDGFARGYDDLDGGWVASAIGMEDLRSQLLARATGRVLEVGVGTGLNLQHYRRAVVSDIDAVDLSPGMLSQASAKSESLGMAGITRLQQMDVEDLKFPSRTFDTVVDTFSLCVFSNPAAALREMARVCKPTGRVLLLENSKSNFGPLAAYQDMTASYLADKGGAKGCFWNQDVEALAREAGLRVERSSAALPGGVFRALE 609
            E++YD +A  YD LD      A+G  +LR +L+A A G+VLE+ VGTGLNL  Y    +  + A+D+S GML QA  +++ L         Q DV  L F +  FD V+DTFSLCVF +PAAA+RE ARV +P G +LLLE+ +S F PLA YQD+TA  +A  G  KGCFWNQDV  L   AGLRV+R   ++ GG+   LE
Sbjct:   24 EEAYDQYAGSYDVLDSSAATDALGFPELRRELIAEAHGKVLELAVGTGLNLPLYHPDQLESLSALDISAGMLQQARMRAQGLSSQLPVTFLQGDVAALPFEAAYFDCVLDTFSLCVFPDPAAAVREAARVLRPGGTLLLLEHQRSPFAPLAWYQDLTADAVAAMG--KGCFWNQDVAGLLNAAGLRVQRKKESI-GGLIVLLE 223
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8974.17056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ21_ECTSI1.030e-10578.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3H3_9PHAE1.610e-9777.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CG23_9STRA1.170e-6558.74S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S0WEJ0_9CHLO7.050e-5249.75Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]
A0A836BNX8_9CHLO3.790e-5151.14Methyltransf_11 domain-containing protein n=1 Tax=... [more]
E1Z8H8_CHLVA6.330e-5151.01Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A061R1H8_9CHLO6.870e-5151.02Methyltransferase type 11 n=1 Tax=Tetraselmis sp. ... [more]
K8YNM9_NANGC8.130e-5053.37Rrna (Guanine-n-)-methyltransferase n=1 Tax=Nannoc... [more]
A0A4D9D970_9STRA1.050e-4952.40THUMP domain-containing protein n=2 Tax=Monodopsid... [more]
A0A8J9WTP0_9CHLO3.720e-4948.77Probable ubiquinone/menaquinone biosynthesis C-met... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8974contigS-dermatodea_contig8974:1196..5539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.0
Seed ortholog evalue2.4e-74
Seed eggNOG ortholog2880.D8LQ21
KEGG koko:K17803
EggNOG free text desc.methyltransferase activity
EggNOG OGsCOG0500@1,KOG4300@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-15_001250.1
Exons5
Model size1537
Cds size555
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925375.9331117-UTR-S-dermatodea_contig8974:1195..21051622925375.9331117-UTR-S-dermatodea_contig8974:1195..2105Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8974 1196..2105 -
1694079891.1576753-UTR-S-dermatodea_contig8974:1195..21051694079891.1576753-UTR-S-dermatodea_contig8974:1195..2105Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8974 1196..2105 -
1622925376.0071175-UTR-S-dermatodea_contig8974:5467..55391622925376.0071175-UTR-S-dermatodea_contig8974:5467..5539Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8974 5468..5539 -
1694079891.2379622-UTR-S-dermatodea_contig8974:5467..55391694079891.2379622-UTR-S-dermatodea_contig8974:5467..5539Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8974 5468..5539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925375.9463327-CDS-S-dermatodea_contig8974:2105..23041622925375.9463327-CDS-S-dermatodea_contig8974:2105..2304Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8974 2106..2304 -
1694079891.1825902-CDS-S-dermatodea_contig8974:2105..23041694079891.1825902-CDS-S-dermatodea_contig8974:2105..2304Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8974 2106..2304 -
1622925375.961105-CDS-S-dermatodea_contig8974:2950..30181622925375.961105-CDS-S-dermatodea_contig8974:2950..3018Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8974 2951..3018 -
1694079891.192116-CDS-S-dermatodea_contig8974:2950..30181694079891.192116-CDS-S-dermatodea_contig8974:2950..3018Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8974 2951..3018 -
1622925375.970892-CDS-S-dermatodea_contig8974:3961..40991622925375.970892-CDS-S-dermatodea_contig8974:3961..4099Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8974 3962..4099 -
1694079891.2005208-CDS-S-dermatodea_contig8974:3961..40991694079891.2005208-CDS-S-dermatodea_contig8974:3961..4099Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8974 3962..4099 -
1622925375.9806716-CDS-S-dermatodea_contig8974:4790..49341622925375.9806716-CDS-S-dermatodea_contig8974:4790..4934Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8974 4791..4934 -
1694079891.2123423-CDS-S-dermatodea_contig8974:4790..49341694079891.2123423-CDS-S-dermatodea_contig8974:4790..4934Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8974 4791..4934 -
1622925375.9946787-CDS-S-dermatodea_contig8974:5461..54671622925375.9946787-CDS-S-dermatodea_contig8974:5461..5467Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8974 5462..5467 -
1694079891.229352-CDS-S-dermatodea_contig8974:5461..54671694079891.229352-CDS-S-dermatodea_contig8974:5461..5467Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8974 5462..5467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8974.17056.1prot_S-dermatodea_contig8974.17056.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8974 2106..5467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8974.17056.1

>prot_S-dermatodea_contig8974.17056.1 ID=prot_S-dermatodea_contig8974.17056.1|Name=mRNA_S-dermatodea_contig8974.17056.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=185bp
MEDLRSQLLARATGRVLEVGVGTGLNLQHYRRAVVSDIDAVDLSPGMLSQ
ASAKSESLGMAGITRLQQMDVEDLKFPSRTFDTVVDTFSLCVFSNPAAAL
REMARVCKPTGRVLLLENSKSNFGPLAAYQDMTASYLADKGGAKGCFWNQ
DVEALAREAGLRVERSSAALPGGVFRALECVPIL*
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mRNA from alignment at S-dermatodea_contig8974:1196..5539-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8974.17056.1 ID=mRNA_S-dermatodea_contig8974.17056.1|Name=mRNA_S-dermatodea_contig8974.17056.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4344bp|location=Sequence derived from alignment at S-dermatodea_contig8974:1196..5539- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGAAATCGTACGACGGATTTGCGCGGGGTTACGACGACCTCGACGGGGG
ATGGGTGGCCTCCGCCATTGGTATGGAGGTGCGCTGCTTGTTTTGCGGCC
ATAGAGTTACCGTTTGCATATGCGTACAACAGAACAGCAGTACCTTCCCG
CTCGTAAGACACACGCCTGTAAGAAAACTAGTTCAATAATTTTGGTGCAA
TTAGGAAATACTTTTCTTTGGCCTATGATGTGTCCTACGCTCCGTTTTCC
CTTGCGACCACGGCTGGACTCTGAGAGAGATCAGTTAATGTGAGAACGAC
GAGGAAAGCAGCAGCATCAATAAAGTGCTCACGGCACCAGCCGTGGGATC
GTACCATAATATGCGCAGTGCGTCTTGTTCAGAAGAGCAAGGGTGCATGC
GCACCGAAGCTTGTAGATTTCAGCCCATTCGATCCGTGGCACGAAGCATC
CCACCTTCAATATCTACTGTGAGTGCTATTATTCACACAACCCTACCTGT
CAAAGCACCTGTGGGTTTGATAGCAACGACTAACAGTATCGTCGTGAACC
TGTTTTTGTCCTCGACCTCATTCAGCCGACACTATCCCTAACGTTTGCTG
CGCAGGATCTCCGATCGCAGCTTCTAGCACGAGCTACGGGACGTGTCCTC
GAAGTTGGCGTGGGGACGGGTCTTAATCTTCAGCACTATCGGCGGGCGGT
TGTGTCGGATATCGACGCGGTCGACCTGAGTCCGGGCATGCTCAGCCAGG
TATGTAACACATGTTGAATCCGCTGGTGTTCACGCCGCTTCTGCTGCTTG
TTCGTTATGCTCTGTCGACGTTTCACCCCGCTCTATAGCGCACGCGTCGT
TTCATGTTGTATTTGTCGATGGAAGGCCTTTATCAAACGCATGGCGTTCT
TGCGAGTGTCTGGTGAGACTGCTACTGTAGAGCCTATGTGTGGGAGGCTG
TTGTTGCTGTTGCGTGTGACGATATCAAATTTCGTAACTTTCGCACGCGC
GTGTGTGGTATATACACCGAACGTGACGCTTCGGTGTTGGGTATTATCTC
AGTTACAGTTGCACGGGAAGCGAACCAGGCGTTAGCCGCCGTTTACTGTC
ACCGTCCTGCTACCGTTGATGTTGTACAATAGGTGAGATCGCTGTACAAT
ACTAGACCGTGATAACCGGACAGCACTGCTGTTCCCTTTTCGCGCGGCAC
GTACGACAGGAGAAGCTGAACCACAAATTGAAGTCCGGACTGTTCCCCCA
CTGCCTTTCTTTTATCAACAAACGTTACGTACATAAAATATTATGACCGT
GTACAACGGGAGCTACACCGTGGAGAGTCTGACCAGCGTGCTTTCGTCAA
ATGCACGAGGGCAGTAATACACTAAAAGAGTAACGCCCCCATGGCGGCAT
CTTGGCCTGAGGAGTATTGTCACCTGTTTTACCTAAGCAGGCATCCGCGA
AGAGCGAGTCGCTGGGCATGGCAGGGATAACGCGACTGCAGCAGATGGAC
GTCGAGGACCTCAAGTTCCCGTCGAGAACGTTCGACACCGTGGTAGACAC
TTTCTCCCTGTGTGTCTTCTCCAACCCGGTAAGGAGCCGTTCTTACCAGC
GCCCCTTCACTAACAAAAAGCGGCAGCGCCTTCATTGGGTGATGGATTAC
CATACGTACAACCGATCAGCCCCGCAAATGGTTGCCGACCCCGCTCGTGG
TCAGACGAGAAAAATCAAGGGATCGAGAAATAATTAAAAACTACGGAATA
TAAAAAAACAAAGCAGACAAATAAACAAGCAGAGAAACAAAGCTCAGAGA
AACCGCGAGAGCTACAGTACCCATGGATCCACGGTCCCAACTCACCCACC
CGAACGAAAAACAAAGAAAAAAATTGGAAAAAAACTGCGTGATCGTTTTC
TTCGCGAAACTGAGATTGGGCCAAAAACAGAAAATCTCCCGCCGCCTCAT
TTCGTCACGAAGAAGCCATGCTTGAAAGATCGCGCCGGTTTTGCTGTAAT
ATAAATTGTTGTGTCCGTGTTTTTCGTGAGAAAGTCACCCTCCGTGTTGG
GAACCACCCGACCTCAAGGCAAGCCACGCCCACGCGATAACACAGCCCAT
GAAGCATCGAGCAGCGAATCTTACCCTTTTAGAGGAGTACTTGTTTTCGC
AGGCGCGCGGTCTAGGAGCGCGAGTGCGTTTTGTGCGCCCTGCCCTGCCT
TGTTGTTTCTATCATCCTCCCGTGTTATACCTTACTGTTTGTTGTACCGT
TTATTGTACAAGGGTAGGCGGTCAGCATGCATCCGAATCCCTTGCTCGTG
GCGACGGGTTTCATTCAACGTATGACATGCAGAGCGTGTTGTCTTGGTAG
GAAATTCGAATGATTTTATTTTGTTGGGGGAAATACAGATGACGCGGCGA
CCACTTTTTTACTCCTGCATGGTGATGAACCGGCAGGGATCTTGATGCCT
CTTTTACCTGGCTTGTTGTAGTACACGAACAAGGTCCTGAACTCTCCGCG
TCCTCCCCAACGCTACAACAGGCGGCGGCACTGCGAGAGATGGCGAGAGT
CTGTAAGCCGACCGGTCGTGTGCTGCTGCTCGAAAACAGGTGAGTAAAGC
CAGGTCGGTCTTCGCCAACAACAACGGAACACCACCGTTACAGCGGTCGA
TGGCCGTGTGCAGTACACGGCTTTTATCCCCCTCCTTTTCCCCAAGCCCG
CGGTTTCGCTCTGACAAGACGCGTTTCCGTTCCTTTTTTGAGTACGATAC
TATACTTTTTGCAGACTAATTTTTTTGTGGTGTCCCCGCACTCCACCCCA
TCTTAAAAAAACGCCTTAAGTGTTGTTCCGGCGAGAGTTTGACGACGAGC
AGGACGTCAACAGCCCCCTGTTCGCACGCGCCCGCTCCATAAGACCCCCT
TTGAAATCATCGCGTGGCGTCGTATAGCCACACTCCTTGAGGTTTAAAGC
AGCTCTCCCGCCCCTCCTCAAGACAATTTAGTATATGCGATATAATGGAA
GAATACACCGGTGTTCAAAACCTCCGTTTAATGTGAACGGGTCCCAACAT
GCATGCATGCCAATGGTGCCAGTTAAAATGGGTAGGGGTATCATAGGTGT
GATGATACGTCATACTGCACGTGATTTCATGGAGTGCTGTTGCTTGACAG
CGGTACCCACCTATGCCCCCCCCCCCCCCGCCTCCCCCGCCCCCCGCGCG
CGCGCGCACTTTACGCCTCGGGCTTCGCTCGGCAGTAAGAGCAACTTCGG
CCCGCTGGCGGCCTATCAGGATATGACCGCCTCCTACCTAGCCGACAAGG
GCGGCGCCAAGGGGTGCTTCTGGAACCAAGACGTAGAGGCGTTGGCGAGG
GAAGCGGGGTTGCGGGTAGAGAGGTCGTCAGCGGCGCTTCCGGGCGGTGT
GTTTCGGGCTCTGGAGTGCGTACCGATTTTGTAGATCGTGCTTGTGTTGA
TTGTGGACGTCTGCTGTTACGGTGGAACAGAGTAACCAATTCGGGGCTGG
GCCCGTTTATTGCCGAAAATCGCGGCGACGGGAATAAGGAAGTGCTCCGT
GCATGCAAGCGGAGCGTGGCAGGGTCATCATACCTTGTTCACCGCCACTG
CTGCGAAATACGGCGACGAGTAGCAACCGCATCTGTGTGCAGTTTCCCCT
GGAGTGTGCCCGTGAGTTATTGGGGATGTACAGGTGAACTATATTCTGTT
TTTTATAAACTGCAGTAGCAACCGAGCATTTCCCCGGATGAAGCCCAGCA
AGCTTACGAGGAAGTCAACAACTACAACTCCGGTGATATGATCGATTTAC
AGAGTTGCACGGGAGGTCCATTGCATCGAGATTGTTTGGGGTTGAGTCTG
ACAATAATTCCATCATCACACGATGGGAGATCTCTACCCTACTAAAGGGT
ACAAACATGAAATAATCAAGGATAGTTTGGGAACTCGTTTGTGTCTCCGT
AGCCTGTCTAAATTTTGTAGAGGATCGACTGTCGATCTCGTCCGCTTCCT
GTTTTGTACCCTTAGGGTGGGGATCTCCCATCGTGTGATGGTAGTCTAGG
TAGTAGTTATTAGCGGGCCCCCTCGGCTCGTTTACTTATTACCTGAATGC
ATCCCTCCGATTCATAGTCAGACTCGGCCCCAAACAATCCCGATAAACTC
CTATGCAACTCTGCAAATCGATCTTATCACCGGAGTTGTAGTTGTTCACC
TCCCTGTAAAGCTTGCTGGGGCTTCATCCACGGAATGCTCGGTTGCTGCA
GTTTGTTGAAGATGCGGGTGAACCTTTTTGTTGCTATCGAATGATGATGC
GGGTTGAACCATGGTGTGAATGTTATCAAAATATTATAATAGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8974:1196..5539-

>mRNA_S-dermatodea_contig8974.17056.1 ID=mRNA_S-dermatodea_contig8974.17056.1|Name=mRNA_S-dermatodea_contig8974.17056.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at S-dermatodea_contig8974:1196..5539- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGATGGAGGATCTCCGATCGCAGCTTCTAGCACGAGCTACGGGACG
TGTCCTCGAAGTTGGCGTGGGGACGGGTCTTAATCTTCAGCACTATCGGC
GGGCGGTTGTGTCGGATATCGACGCGGTCGACCTGAGTCCGGGCATGCTC
AGCCAGGATCTCCGATCGCAGCTTCTAGCACGAGCTACGGGACGTGTCCT
CGAAGTTGGCGTGGGGACGGGTCTTAATCTTCAGCACTATCGGCGGGCGG
TTGTGTCGGATATCGACGCGGTCGACCTGAGTCCGGGCATGCTCAGCCAG
GCATCCGCGAAGAGCGAGTCGCTGGGCATGGCAGGGATAACGCGACTGCA
GCAGATGGACGTCGAGGACCTCAAGTTCCCGTCGAGAACGTTCGACACCG
TGGTAGACACTTTCTCCCTGTGTGTCTTCTCCAACCCGGCATCCGCGAAG
AGCGAGTCGCTGGGCATGGCAGGGATAACGCGACTGCAGCAGATGGACGT
CGAGGACCTCAAGTTCCCGTCGAGAACGTTCGACACCGTGGTAGACACTT
TCTCCCTGTGTGTCTTCTCCAACCCGGCGGCGGCACTGCGAGAGATGGCG
AGAGTCTGTAAGCCGACCGGTCGTGTGCTGCTGCTCGAAAACAGGCGGCG
GCACTGCGAGAGATGGCGAGAGTCTGTAAGCCGACCGGTCGTGTGCTGCT
GCTCGAAAACAGTAAGAGCAACTTCGGCCCGCTGGCGGCCTATCAGGATA
TGACCGCCTCCTACCTAGCCGACAAGGGCGGCGCCAAGGGGTGCTTCTGG
AACCAAGACGTAGAGGCGTTGGCGAGGGAAGCGGGGTTGCGGGTAGAGAG
GTCGTCAGCGGCGCTTCCGGGCGGTGTGTTTCGGGCTCTGGAGTGCGTAC
CGATTTTGTAGTAAGAGCAACTTCGGCCCGCTGGCGGCCTATCAGGATAT
GACCGCCTCCTACCTAGCCGACAAGGGCGGCGCCAAGGGGTGCTTCTGGA
ACCAAGACGTAGAGGCGTTGGCGAGGGAAGCGGGGTTGCGGGTAGAGAGG
TCGTCAGCGGCGCTTCCGGGCGGTGTGTTTCGGGCTCTGGAGTGCGTACC
GATTTTGTAG
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