mRNA_S-dermatodea_contig8968.17054.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8968.17054.1
Unique NamemRNA_S-dermatodea_contig8968.17054.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8968.17054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8968contigS-dermatodea_contig8968:1561..2623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size587
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8968.17054.1prot_S-dermatodea_contig8968.17054.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8968 1561..2516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925375.8233702-CDS-S-dermatodea_contig8968:1560..17631622925375.8233702-CDS-S-dermatodea_contig8968:1560..1763Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8968 1561..1763 -
1694079891.0600057-CDS-S-dermatodea_contig8968:1560..17631694079891.0600057-CDS-S-dermatodea_contig8968:1560..1763Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8968 1561..1763 -
1622925375.8366308-CDS-S-dermatodea_contig8968:2064..23381622925375.8366308-CDS-S-dermatodea_contig8968:2064..2338Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8968 2065..2338 -
1694079891.075942-CDS-S-dermatodea_contig8968:2064..23381694079891.075942-CDS-S-dermatodea_contig8968:2064..2338Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8968 2065..2338 -
1622925375.8509512-CDS-S-dermatodea_contig8968:2513..25161622925375.8509512-CDS-S-dermatodea_contig8968:2513..2516Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8968 2514..2516 -
1694079891.095302-CDS-S-dermatodea_contig8968:2513..25161694079891.095302-CDS-S-dermatodea_contig8968:2513..2516Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8968 2514..2516 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925375.8613596-UTR-S-dermatodea_contig8968:2516..26231622925375.8613596-UTR-S-dermatodea_contig8968:2516..2623Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8968 2517..2623 -
1694079891.109116-UTR-S-dermatodea_contig8968:2516..26231694079891.109116-UTR-S-dermatodea_contig8968:2516..2623Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8968 2517..2623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8968.17054.1

>prot_S-dermatodea_contig8968.17054.1 ID=prot_S-dermatodea_contig8968.17054.1|Name=mRNA_S-dermatodea_contig8968.17054.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=160bp
MGFHQEDKVRCDGGTGGAGMTEYTQPCAYKSHTKHDYSKREHHNRDPETS
VINCLTIDRCKTAPVLYLESTKEQLHKTVMKNLAAEVRRVSPVQQGRHNR
RGRVYVLPCSQQAYSSQRPTAEKAGVRLSALQAGEVHGGIVGPELAQNSW
GGGGWSLSV*
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mRNA from alignment at S-dermatodea_contig8968:1561..2623-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8968.17054.1 ID=mRNA_S-dermatodea_contig8968.17054.1|Name=mRNA_S-dermatodea_contig8968.17054.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1063bp|location=Sequence derived from alignment at S-dermatodea_contig8968:1561..2623- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCATCAATCGCGGCCATCAGGCGCGCTATCCCTGGGATTGGAGAGCTTGC
TGTGAAACAGGCCAGCAAACGTAGAAAATTCGCGGAGAATAATGAAGACC
CGAACGCATGGTAAGCAGGGGAACGTGGTGGCTCTCCGGGGTTTCAGTGT
GACTGCCCCCCTCGGTATGTGGCGATTTAGCTGTCTTATATTTTATCCCA
CATCTACGAGCATGTTATTGTGAGGGCATTAACTCCCTGGCGTTCGTTGT
CATCACTTCGGCGTTGCGCCGTCTTTGCATCGCAGGGTTTTCACCAGGAA
GACAAGGTCAGATGTGATGGAGGTACAGGCGGAGCAGGCATGACCGAGTA
CACGCAACCCTGCGCTTACAAGAGCCACACGAAGCACGACTACTCAAAGA
GAGAGCATCACAATCGTGACCCCGAAACATCGGTGATCAATTGCCTCACC
ATCGACAGGTGCAAAACTGCCCCAGTTTTGTACCTGGAGAGCACCAAGGA
GCAACTGCACAAGACGGTAATGAAGAACCTCGCTGCCGAGGTAAGGAGAG
TTTCGCCAGGTGTGTTACATAGGAACCTGTAGGTAAGGGGCTTGCATATG
TTGCTGGGAATAAAGTGTTGCGCATACGTACCAATATATTTGTACGTAAT
CCACAATATAATACTCCACAGCTCGACGTGTGTCTATTTACATTGCGCTT
TGTTTATACACAGGTCTCCCAGAGGAGACTGCTGCCGGATATTAGTCCCC
ATCGTTCTGTCGTGAATGTACACACCGAGAAACTACCCGCTACGACAAGC
TGACGATCTCGCCCCCACCGTCCCCGTGCTAACCTGGAAATTTTTACTTC
TCGCCGGCAGTTCAGCAAGGACGACACAACCGTCGAGGTAGGGTATATGT
CCTACCCTGTAGTCAACAGGCTTATTCCTCACAACGTCCTACCGCAGAAA
AGGCGGGTGTGCGTCTGTCCGCACTGCAAGCGGGCGAAGTTCATGGCGGA
ATCGTTGGTCCTGAACTGGCCCAAAATTCGTGGGGGGGGGGAGGGTGGAG
CCTGTCCGTGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8968:1561..2623-

>mRNA_S-dermatodea_contig8968.17054.1 ID=mRNA_S-dermatodea_contig8968.17054.1|Name=mRNA_S-dermatodea_contig8968.17054.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at S-dermatodea_contig8968:1561..2623- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGGGTTTTCACCAGGAAGACAAGGTCAGATGTGATGGAGGTACAGG
CGGAGCAGGCATGACCGAGTACACGCAACCCTGCGCTTACAAGAGCCACA
CGAAGCACGACTACTCAAAGAGAGAGCATCACAATCGTGACCCCGAAACA
TCGGTGATCAATTGCCTCACCATCGACAGGTGCAAAACTGCCCCAGTTTT
GTACCTGGAGAGCACCAAGGAGCAACTGCACAAGACGGTAATGAAGAACC
TCGCTGCCGAGGTAAGGAGAGTTTCGCCAGGGTTTTCACCAGGAAGACAA
GGTCAGATGTGATGGAGGTACAGGCGGAGCAGGCATGACCGAGTACACGC
AACCCTGCGCTTACAAGAGCCACACGAAGCACGACTACTCAAAGAGAGAG
CATCACAATCGTGACCCCGAAACATCGGTGATCAATTGCCTCACCATCGA
CAGGTGCAAAACTGCCCCAGTTTTGTACCTGGAGAGCACCAAGGAGCAAC
TGCACAAGACGGTAATGAAGAACCTCGCTGCCGAGGTAAGGAGAGTTTCG
CCAGTTCAGCAAGGACGACACAACCGTCGAGGTAGGGTATATGTCCTACC
CTGTAGTCAACAGGCTTATTCCTCACAACGTCCTACCGCAGAAAAGGCGG
GTGTGCGTCTGTCCGCACTGCAAGCGGGCGAAGTTCATGGCGGAATCGTT
GGTCCTGAACTGGCCCAAAATTCGTGGGGGGGGGGAGGGTGGAGCCTGTC
CGTGTGATTCAGCAAGGACGACACAACCGTCGAGGTAGGGTATATGTCCT
ACCCTGTAGTCAACAGGCTTATTCCTCACAACGTCCTACCGCAGAAAAGG
CGGGTGTGCGTCTGTCCGCACTGCAAGCGGGCGAAGTTCATGGCGGAATC
GTTGGTCCTGAACTGGCCCAAAATTCGTGGGGGGGGGGAGGGTGGAGCCT
GTCCGTGTGA
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