mRNA_S-dermatodea_contig8966.17051.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8966.17051.1
Unique NamemRNA_S-dermatodea_contig8966.17051.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8966.17051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8966contigS-dermatodea_contig8966:2975..7306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size677
Cds size435
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8966.17051.1prot_S-dermatodea_contig8966.17051.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8966 2975..3409 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925375.6625931-CDS-S-dermatodea_contig8966:2974..34091622925375.6625931-CDS-S-dermatodea_contig8966:2974..3409Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8966 2975..3409 -
1694079890.9460056-CDS-S-dermatodea_contig8966:2974..34091694079890.9460056-CDS-S-dermatodea_contig8966:2974..3409Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8966 2975..3409 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925375.6763709-UTR-S-dermatodea_contig8966:3409..35831622925375.6763709-UTR-S-dermatodea_contig8966:3409..3583Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8966 3410..3583 -
1694079890.967098-UTR-S-dermatodea_contig8966:3409..35831694079890.967098-UTR-S-dermatodea_contig8966:3409..3583Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8966 3410..3583 -
1622925375.6860864-UTR-S-dermatodea_contig8966:7240..73061622925375.6860864-UTR-S-dermatodea_contig8966:7240..7306Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8966 7241..7306 -
1694079890.9792771-UTR-S-dermatodea_contig8966:7240..73061694079890.9792771-UTR-S-dermatodea_contig8966:7240..7306Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8966 7241..7306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8966.17051.1

>prot_S-dermatodea_contig8966.17051.1 ID=prot_S-dermatodea_contig8966.17051.1|Name=mRNA_S-dermatodea_contig8966.17051.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=145bp
MVASVSSGMDWDATSEMVQMGVRSGITKQFPAISNQMFIGEALTQKLPFA
GLAEMWAALDKFATNTLPAPAMYGSKSGLTSSGVFNAYAAPPIKSGKGSQ
SRKPAGMPVMMIARDTDAFAIDFAGWPCNEHTWDQVFQVSSTFKT
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mRNA from alignment at S-dermatodea_contig8966:2975..7306-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8966.17051.1 ID=mRNA_S-dermatodea_contig8966.17051.1|Name=mRNA_S-dermatodea_contig8966.17051.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4332bp|location=Sequence derived from alignment at S-dermatodea_contig8966:2975..7306- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCTGGTCTACCTTTTGCCTCGTGGCTACGAGCGGGTTTATAACAAGGAA
CTGAGTCCCATCACATGTGAGCATTAATGATCCACACGTCCCTGAAGGCG
TTGAGGTAGAACCCCGTTACAATTGGCGTTGATGGCAGGGCGCTTTCTCA
AACGTGTGGTTTTGTTTTTTCTCTTCTCTCACTTGCTGGCTTTCAGCATG
TGAGTTGGTTGTGATCGGTTGTTGTTTTTCATATAGTTTCATTTTTTTTT
GCGCGATCGCGCCCTTTTGGGGCGAGTCGTGTGCGGGGGGCGCAGCCTTT
CGACAGTTGCGCCCCAGTGTATCGACTGTTATGTATGGCCGCCGTGTGCG
CGCGTGCACGCGCGCTTAGTGATGGGCGCGCTACTGCTGCTGTGGTCAGC
GTTTGATTTTTTTTTGAGTGGATGGAATCATTTCTGTCTCCGGATGTGCT
TTGTCTTGTTTTATACATGTGGGCATTTCATTTGTTTTATGTGTGGTCCG
CGTGTATGCTATTTGTTTTTCTTGTTCAACGCTTGTATGTCTGGGTTGCG
AATTGCTTCCGGATCTCATGCGTTGACAGTTGACAGTGGTCGCGCTGCTG
CAGACCGGCACGCGGTGTGTCTCGCGCGCGGTGGTGCATAGGTTCAGCGT
TCCTCGCCTGCGTATCATTTCTCCGACACGTGCTCACGAGTTGCACGTGA
TTCGCTCTGTACATGTATATTTATGAGGATCTCACCTATTCTTGTACAAG
AACAGTATGCTGGCATATAATTATATTTGTGTTTTCGAGTGGTTGAGTGG
CGTTTAGACACATGACCATCTTGGTTGTCTGCTGTGGTCACTTTTGGCGC
GCGTCAATCGCACGGCGGCTGTGTATGACGCCATGACAGCCATGGCTGTG
TCCTATGGCAGAAAGGGATGTGCGCTTATGCGGCGGTCCTCGGTTCTGTC
GTAACGAATTTTGTTGGTTCTCAGAGAAATTACAACCTGACAACGGTGCT
TTTGCTGGAGAGGCAAATTCTCTCTTGCTTTTTGTGAGCTGATATTGCTC
CGTTTTGGTGGTGCTTCAGCGAATTTCCGCTTTTCATGCGCGTTCTTCTT
TTGTGCTTGTACGCTGCTCGGGTTTGTAGCGTTGGGGATGGGGATTCCAC
AGTGTCCACGGGACCGCCCGTGGCGCCATTGTGTGCGCATACTTGCTTGG
CCAGCCCCATGTGTTCAATCTACGCGGATTTTTTTGTCTGGTTTACAGAA
AATTCGTGCGCACACTTTTGCTTTGCTTGACTAGCTCCGTGTGTACATGA
CACACATGGTTCTGCTTGCTTAGCTATTATAGTAGCTGCTGTGGTGCTCT
GCATGTATGCATGATGACATTGGCTTTCCCCCTTTATTTTTCCCCACCCT
TCCCGGATAACAGCCCTCCCCTGCTGTGACTTACCGTCTGCATAGGTGTG
ACGAGCTCTTCGGGTCTTTCTTTTAATGTCTATCTCAGGCATGACTCTCG
ATTTTGTTTTTTTATACTGTTCACGCGCACTGGTTAATTATCGACCCTTA
CTTTGTGCTCGACGTATATACATATCATACCATGCGGGATTCTGCCAAAA
ATGGCTTTGTCCGTCCTGTGTATATGTGCGCGGGTAATAGGTGCGAGATA
CATACATTTTTTGTTGTTGCTGTTCTTGTCTCTCCCCCAACGCTCGTGCC
AGATAAAACTCTGACAACCTGCTGTATGTAGGTGTGCGATCGAATTTTTT
GTTTTGTCATGGACGGGACAGCATGAAAACATGTACCTACCACGCGTGAC
TCTCGAAAAAAATGTTTTGTCGTGGAATGGACAAATTTGATTTTGTCGAT
TGAATTTTGTTTTGTCATGGACGGGACAGCATAAAAACATGTACCCCCCA
GGCGTGACTCTCGCAAAATTTGTTTTGTCGTGGAATGGACAAATTTGATT
TTGTCGATTGAATTTTTGTTTTGTCATGGACGGGACAGCATAAAAACATG
TACCCCCCAGGCGTGACTCTCGAAAAATTTGTTTTGTCGTGGAATGGACA
AATTTGATTTTGTCGATCGAAGGTTTGATTTGTCATGGACGGGACAGCAT
AAAAACATGTACACCCCAGGCATTACTCTCGAAAAAATTGTTTTGTCGTG
GACGGGACTGCTTACAACATGTGCCCGTCACGTGTGACTTTGGAACACCA
TGGTGTTTGTCGTGGACGGGACTGCATAAAACATGTACCCGTCAAGAGTG
ACTTTGGAAAACTAAATTGTGTTGCCACGCACGGGGTAGGTGTATGTCCG
GCTTCAATAATGGAGTTTGGGCTTGCCGTTTAGGATTTTTATGCACTCCT
CGGACGGCATTGGAGAGCACGCCCGCCATTTTTGCGTGTCCCTCTGACGG
TTTATTTTTCTTGGTGGCTGCTGGATTCTCACGACCCCTTTTGAGGCAGC
GTGTTTCTGTTTTCCCTCGTGTTTCCACGCACCCATGTGGGGTCGCGTGG
CCGTAGGATCCGATAGAATTTTTCTACTTCTGTTTTGATATATTTGTTTT
CATTTGTTTTGCTTTATTTTGGGCCGTCTCTAGCGAGCGTGACCCCTGCG
GTCAGGCCGTTTTGTTTTCCTTTATAGTTGATGGAGTACGGTGCCAACTA
TGTAACGCGCCTCTTCCGAGGAGGTTGTGGTACTCGATGCATACGGATCC
GGCCATGGCTGCGGTTATGTCGTCCGATGTCGCGGATGCCCGTTGTGCGG
GACATTCAGAGACATGTTCGGCGCTGCCGACGCTCGGGGCACCCCTGCGG
CAGCAGCCGACGGCGTGGGCGCAACCCACGAGTCCGCTCGTGGCCCCTCC
ACGGTTTCGACCGTCGGGGATGGGGCAACCCACGAGTCCGCTCGTGACCT
CCCCACGGCTACGGCCAAGGGGGAAGGATCAGACCACGAGCTGAGCGCTC
CCCCCCGCTGCGGGGCCCGTGGGGGGGGGGGGGGGCAGGAACCCCGCCAT
GAGCTGACCGCTCGTGGCACCTCCGCGGCTGAGACCGTGGGGGAGGGGCG
GAGACCCCGCCATGAGCTGACTGCTCGTGGCACCCCGGCGGCTGAGACCG
TGGGGGAGGGGCGGTGACTCGAGCACGGGGTGATCGCTCGTGGCACGCTC
GCGGCTGAGACCGTGGAGGAGAGACTCGACCACGAGCCGAACGCTAGTGG
CACCTCTGCGGCTGCGGCCGTGGGAGAGGGGACCGCCCGCGAGCTGACTA
CTCGTGGATCCCCCGCGGCTGTGGCGGCCAGAACAACCTCGCGAGCACGC
TCGTGGCGCCTTCAAGGCTGCGGCTGTGAGGGTCGGGTCGGGTCACGCGC
GTAATCTCCTCGGCTGGAGGCAGCCTCCAGGTCGGCGGCGAATCAACCTC
GGCGGCGCTGTCAAATCGCAAGACGAGAGTGCAGCAGGCTTACGTCCTTA
TGTCCGCCATAAAGGCAGTGAAAATCAAAGCCTGAGCTCCCGTTCCCAAC
GGGTATGAATGCCATCGACGCCGCCGTACAGCTTCAGCTTTCGCTCAAGA
AGTGTTTGTTGGACATCCTCGCCCAGTGCGGTCCTGAGAGCGTTCAAGAC
CATTCGCACAGATTATTTCGCGGATGGTGCCGACCCTTGAATAAATGTCT
ACAGTCGGTCATCAATGACGTAGCTGATTCCGACTCATCGCTGTCCCAAC
TGATCGATGAATTTTTCGAACAGGTCGAACAAAAGCTGGACGCCGGGGTC
ACCCAGCTGGAAGGCTTCCAGCATCTCTGTCGGTTGCTGAATAAGCATTT
TGACCGCACCACGCAAGGGCAGACCTTGCAACGGTTGATCAGTTTCCAAA
TAGCGGATGGGGTTCCTTTCGAGGAGTACTACCGTCAGTTGCGTCGGATG
GTTGCGAGTGTGTCCAGTGGGATGGACTGGGATGCAACGTCTGAGATGGT
GCAGATGGGTGTGCGATCCGGCATTACCAAGCAGTTTCCCGCCATCTCTA
ATCAGATGTTTATCGGGGAGGCCTTGACGCAGAAGCTTCCGTTCGCGGGC
TTGGCAGAGATGTGGGCGGCACTAGATAAGTTTGCTACCAACACGTTGCC
GGCCCCGGCCATGTATGGCTCTAAGAGTGGACTGACTTCTTCTGGAGTTT
TTAATGCATACGCTGCCCCGCCGATTAAGAGTGGTAAAGGGAGCCAGTCC
CGCAAACCAGCTGGCATGCCAGTCATGATGATCGCGCGAGACACAGACGC
TTTTGCGATTGATTTTGCTGGTTGGCCGTGCAATGAGCACACTTGGGATC
AAGTCTTTCAAGTGAGCTCTACTTTCAAAACA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8966:2975..7306-

>mRNA_S-dermatodea_contig8966.17051.1 ID=mRNA_S-dermatodea_contig8966.17051.1|Name=mRNA_S-dermatodea_contig8966.17051.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at S-dermatodea_contig8966:2975..7306- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTGCGAGTGTGTCCAGTGGGATGGACTGGGATGCAACGTCTGAGAT
GGTGCAGATGGGTGTGCGATCCGGCATTACCAAGCAGTTTCCCGCCATCT
CTAATCAGATGTTTATCGGGGAGGCCTTGACGCAGAAGCTTCCGTTCGCG
GGCTTGGCAGAGATGTGGGCGGCACTAGATAAGTTTGCTACCAACACGTT
GCCGGCCCCGGCCATGTATGGCTCTAAGAGTGGACTGACTTCTTCTGGAG
TTTTTAATGCATACGCTGCCCCGCCGATTAAGAGTGGTAAAGGGAGCCAG
TCCCGCAAACCAGCTGGCATGCCAGTCATGATGATCGCGCGAGACACAGA
CGCTTTTGCGATTGATTTTGCTGGTTGGCCGTGCAATGAGCACACTTGGG
ATCAAGTCTTTCAAGTGAGCTCTACTTTCAAAACAATGGTTGCGAGTGTG
TCCAGTGGGATGGACTGGGATGCAACGTCTGAGATGGTGCAGATGGGTGT
GCGATCCGGCATTACCAAGCAGTTTCCCGCCATCTCTAATCAGATGTTTA
TCGGGGAGGCCTTGACGCAGAAGCTTCCGTTCGCGGGCTTGGCAGAGATG
TGGGCGGCACTAGATAAGTTTGCTACCAACACGTTGCCGGCCCCGGCCAT
GTATGGCTCTAAGAGTGGACTGACTTCTTCTGGAGTTTTTAATGCATACG
CTGCCCCGCCGATTAAGAGTGGTAAAGGGAGCCAGTCCCGCAAACCAGCT
GGCATGCCAGTCATGATGATCGCGCGAGACACAGACGCTTTTGCGATTGA
TTTTGCTGGTTGGCCGTGCAATGAGCACACTTGGGATCAAGTCTTTCAAG
TGAGCTCTACTTTCAAAACA
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