mRNA_S-dermatodea_contig8962.17045.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8962.17045.1
Unique NamemRNA_S-dermatodea_contig8962.17045.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8962.17045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8962contigS-dermatodea_contig8962:6427..6962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size536
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8962.17045.1prot_S-dermatodea_contig8962.17045.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8962 6552..6947 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925375.0650992-UTR-S-dermatodea_contig8962:6426..65511622925375.0650992-UTR-S-dermatodea_contig8962:6426..6551Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8962 6427..6551 +
1694079890.4930122-UTR-S-dermatodea_contig8962:6426..65511694079890.4930122-UTR-S-dermatodea_contig8962:6426..6551Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8962 6427..6551 +
1622925375.088438-UTR-S-dermatodea_contig8962:6947..69621622925375.088438-UTR-S-dermatodea_contig8962:6947..6962Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8962 6948..6962 +
1694079890.5108895-UTR-S-dermatodea_contig8962:6947..69621694079890.5108895-UTR-S-dermatodea_contig8962:6947..6962Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8962 6948..6962 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925375.0778918-CDS-S-dermatodea_contig8962:6551..69471622925375.0778918-CDS-S-dermatodea_contig8962:6551..6947Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8962 6552..6947 +
1694079890.5019276-CDS-S-dermatodea_contig8962:6551..69471694079890.5019276-CDS-S-dermatodea_contig8962:6551..6947Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8962 6552..6947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8962.17045.1

>prot_S-dermatodea_contig8962.17045.1 ID=prot_S-dermatodea_contig8962.17045.1|Name=mRNA_S-dermatodea_contig8962.17045.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=132bp
MRHGQGGQKKKEATMALLRGAGVYRVTGNKLTGQGTQYWIAFVGRGPAKR
PHPTLCKEDDEHVFRCKDSGTSDPAAPVEVDVGFEDVVNDPGKAPSEPTP
LTTTLMKWQVILLQRAEFTRGNRRRQTLLFR*
back to top

mRNA from alignment at S-dermatodea_contig8962:6427..6962+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8962.17045.1 ID=mRNA_S-dermatodea_contig8962.17045.1|Name=mRNA_S-dermatodea_contig8962.17045.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=536bp|location=Sequence derived from alignment at S-dermatodea_contig8962:6427..6962+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACTCCGCCGTCGCGCAAAACGTGCAGCGGCTCCTTATCGCCCGTGGGAG
TTCCAACAGATATTATACCCAGGAAAAAGTGGAGCTTGAGTTAGGGTTGG
AGCGAGGAGCACGTATTATGGGACCATGCGTCATGGGCAAGGAGGTCAGA
AGAAGAAGGAAGCAACCATGGCCCTTCTCAGAGGAGCGGGCGTGTACCGG
GTCACGGGAAATAAGTTGACGGGCCAGGGTACGCAGTACTGGATTGCCTT
TGTTGGCAGAGGACCGGCGAAGCGACCCCATCCGACCCTCTGTAAGGAGG
ACGACGAGCATGTTTTTCGGTGCAAGGACAGTGGTACCTCGGATCCGGCG
GCGCCTGTCGAGGTGGACGTGGGCTTTGAGGACGTGGTCAATGACCCGGG
CAAGGCGCCATCGGAACCTACGCCGCTGACAACCACGCTCATGAAATGGC
AAGTAATACTGCTGCAGCGCGCAGAGTTCACGCGAGGGAACCGCCGACGG
CAAACACTGCTGTTCCGGTAGAGAAAGCTTGTGGAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8962:6427..6962+

>mRNA_S-dermatodea_contig8962.17045.1 ID=mRNA_S-dermatodea_contig8962.17045.1|Name=mRNA_S-dermatodea_contig8962.17045.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at S-dermatodea_contig8962:6427..6962+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGTCATGGGCAAGGAGGTCAGAAGAAGAAGGAAGCAACCATGGCCCT
TCTCAGAGGAGCGGGCGTGTACCGGGTCACGGGAAATAAGTTGACGGGCC
AGGGTACGCAGTACTGGATTGCCTTTGTTGGCAGAGGACCGGCGAAGCGA
CCCCATCCGACCCTCTGTAAGGAGGACGACGAGCATGTTTTTCGGTGCAA
GGACAGTGGTACCTCGGATCCGGCGGCGCCTGTCGAGGTGGACGTGGGCT
TTGAGGACGTGGTCAATGACCCGGGCAAGGCGCCATCGGAACCTACGCCG
CTGACAACCACGCTCATGAAATGGCAAGTAATACTGCTGCAGCGCGCAGA
GTTCACGCGAGGGAACCGCCGACGGCAAACACTGCTGTTCCGGTAGATGC
GTCATGGGCAAGGAGGTCAGAAGAAGAAGGAAGCAACCATGGCCCTTCTC
AGAGGAGCGGGCGTGTACCGGGTCACGGGAAATAAGTTGACGGGCCAGGG
TACGCAGTACTGGATTGCCTTTGTTGGCAGAGGACCGGCGAAGCGACCCC
ATCCGACCCTCTGTAAGGAGGACGACGAGCATGTTTTTCGGTGCAAGGAC
AGTGGTACCTCGGATCCGGCGGCGCCTGTCGAGGTGGACGTGGGCTTTGA
GGACGTGGTCAATGACCCGGGCAAGGCGCCATCGGAACCTACGCCGCTGA
CAACCACGCTCATGAAATGGCAAGTAATACTGCTGCAGCGCGCAGAGTTC
ACGCGAGGGAACCGCCGACGGCAAACACTGCTGTTCCGGTAG
back to top