mRNA_S-dermatodea_contig8959.17043.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8959.17043.1
Unique NamemRNA_S-dermatodea_contig8959.17043.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8959.17043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8959contigS-dermatodea_contig8959:4202..5348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size554
Cds size552
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8959.17043.1prot_S-dermatodea_contig8959.17043.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8959 4202..5348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925374.9741757-CDS-S-dermatodea_contig8959:4201..45201622925374.9741757-CDS-S-dermatodea_contig8959:4201..4520Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8959 4202..4520 +
1694079890.4583962-CDS-S-dermatodea_contig8959:4201..45201694079890.4583962-CDS-S-dermatodea_contig8959:4201..4520Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8959 4202..4520 +
1622925374.9866598-CDS-S-dermatodea_contig8959:4739..49211622925374.9866598-CDS-S-dermatodea_contig8959:4739..4921Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8959 4740..4921 +
1694079890.4668026-CDS-S-dermatodea_contig8959:4739..49211694079890.4668026-CDS-S-dermatodea_contig8959:4739..4921Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8959 4740..4921 +
1622925375.0030155-CDS-S-dermatodea_contig8959:5297..53481622925375.0030155-CDS-S-dermatodea_contig8959:5297..5348Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8959 5298..5348 +
1694079890.4755259-CDS-S-dermatodea_contig8959:5297..53481694079890.4755259-CDS-S-dermatodea_contig8959:5297..5348Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8959 5298..5348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8959.17043.1

>prot_S-dermatodea_contig8959.17043.1 ID=prot_S-dermatodea_contig8959.17043.1|Name=mRNA_S-dermatodea_contig8959.17043.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=184bp
RPVRSTVDGKALDHGECRLMWSADEDGGAYLRETRTMEITPAGTVLNVMG
MGAQGVNSTEWGVVVDESPTNFFLAHPDQSQAPLPVAKTRVAGRDKAAMD
ALFMCNGVESDALDALTSGEYFSQTRKGVRRVAEKVKEDQGQWGNLKSQN
FIKEDVEGWDPLWTGQQVEAAFRARARVAATMAT
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mRNA from alignment at S-dermatodea_contig8959:4202..5348+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8959.17043.1 ID=mRNA_S-dermatodea_contig8959.17043.1|Name=mRNA_S-dermatodea_contig8959.17043.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1147bp|location=Sequence derived from alignment at S-dermatodea_contig8959:4202..5348+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGACCGGTGCGCTCGACGGTTGATGGGAAAGCACTCGACCATGGTGAATG
TCGGCTCATGTGGTCGGCCGATGAAGACGGCGGTGCTTACCTGCGCGAGA
CGCGTACGATGGAAATCACCCCGGCGGGGACAGTCCTAAACGTGATGGGC
ATGGGCGCACAAGGCGTTAACAGCACTGAGTGGGGGGTCGTTGTCGACGA
GTCTCCAACGAACTTCTTTCTGGCTCACCCGGACCAGAGTCAGGCCCCCC
TACCGGTTGCCAAAACGAGGGTGGCCGGGCGGGACAAGGCCGCTATGGAC
GCACTCTTCATGTGCAATGGTACGTGGAAGTGTCTTGCTGGGTAGGCAGA
CTGTGTCTTTAGTCAGTGTATTTCTCCTGTAGGGCAGCGGATTTTGGACT
TGGGAAGGGGGCGGAATGCTTAAGGACCACGGAGCGCAACGGTATGCGCA
CCGACTGGAGTACCCCTTTCATGTTGCGAACGGTCTCACTAACTGTACAT
ACTTTAGCCCTCACCCCCTTTGTATGTTGTTGTGGCAGGCGTTGAAAGCG
ATGCGCTCGACGCCCTGACGTCAGGGGAATACTTCTCTCAAACAAGAAAG
GGTGTGAGACGCGTCGCGGAAAAGGTCAAGGAGGACCAAGGGCAATGGGG
CAACCTAAAATCCCAAAACTTCATCAAAGAGGACGTTGAAGGTTGGGACC
CGCTTTGGACGGGCCAGCAGGTGTGATTACTCTGCATGAATTGCCTTGTT
CTTTCCGTCCACTGCGTTGAGGAGCTCACCTGATGGTACCCTCGCTCATC
GCGGCGCTAGCGCATCTGGTATTGCTCCCAACATATGTGTTGCATCGGCC
AGGGTTGGGGGCGTGTACAAATTCTCACCGCTAGAACGAGGGGGGCTAGG
GGCGAGCAAGCAAGCCGTGACGACCCGGGCGCTACGGCAGCCCCGTTGAT
GTTGCAACTCCCGCCCATAAATTACCTCGGAATATTTTTTTCTTGACCCA
CCTCTGTGTGTACCTTTAGGCGGAAGGTTCGCGTCACCCGTGTCTCTTGT
AGACACTTCACTATAATAATCGCACCTTCCACGCACGCGATTGCAGGTCG
AGGCCGCATTCCGCGCACGCGCGCGAGTGGCAGCAACTATGGCCACC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8959:4202..5348+

>mRNA_S-dermatodea_contig8959.17043.1 ID=mRNA_S-dermatodea_contig8959.17043.1|Name=mRNA_S-dermatodea_contig8959.17043.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at S-dermatodea_contig8959:4202..5348+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGACCGGTGCGCTCGACGGTTGATGGGAAAGCACTCGACCATGGTGAATG
TCGGCTCATGTGGTCGGCCGATGAAGACGGCGGTGCTTACCTGCGCGAGA
CGCGTACGATGGAAATCACCCCGGCGGGGACAGTCCTAAACGTGATGGGC
ATGGGCGCACAAGGCGTTAACAGCACTGAGTGGGGGGTCGTTGTCGACGA
GTCTCCAACGAACTTCTTTCTGGCTCACCCGGACCAGAGTCAGGCCCCCC
TACCGGTTGCCAAAACGAGGGTGGCCGGGCGGGACAAGGCCGCTATGGAC
GCACTCTTCATGTGCAATGCGACCGGTGCGCTCGACGGTTGATGGGAAAG
CACTCGACCATGGTGAATGTCGGCTCATGTGGTCGGCCGATGAAGACGGC
GGTGCTTACCTGCGCGAGACGCGTACGATGGAAATCACCCCGGCGGGGAC
AGTCCTAAACGTGATGGGCATGGGCGCACAAGGCGTTAACAGCACTGAGT
GGGGGGTCGTTGTCGACGAGTCTCCAACGAACTTCTTTCTGGCTCACCCG
GACCAGAGTCAGGCCCCCCTACCGGTTGCCAAAACGAGGGTGGCCGGGCG
GGACAAGGCCGCTATGGACGCACTCTTCATGTGCAATGGCGTTGAAAGCG
ATGCGCTCGACGCCCTGACGTCAGGGGAATACTTCTCTCAAACAAGAAAG
GGTGTGAGACGCGTCGCGGAAAAGGTCAAGGAGGACCAAGGGCAATGGGG
CAACCTAAAATCCCAAAACTTCATCAAAGAGGACGTTGAAGGTTGGGACC
CGCTTTGGACGGGCCAGCAGGCGTTGAAAGCGATGCGCTCGACGCCCTGA
CGTCAGGGGAATACTTCTCTCAAACAAGAAAGGGTGTGAGACGCGTCGCG
GAAAAGGTCAAGGAGGACCAAGGGCAATGGGGCAACCTAAAATCCCAAAA
CTTCATCAAAGAGGACGTTGAAGGTTGGGACCCGCTTTGGACGGGCCAGC
AGGTCGAGGCCGCATTCCGCGCACGCGCGCGAGTGGCAGCAACTATGGCC
ACCGTCGAGGCCGCATTCCGCGCACGCGCGCGAGTGGCAGCAACTATGGC
CACC
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