mRNA_S-dermatodea_contig89565.17040.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig89565.17040.1
Unique NamemRNA_S-dermatodea_contig89565.17040.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig89565.17040.1 vs. uniprot
Match: D7FKC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKC7_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.020e-25
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 RRQGYGPRLLVELIDPNASLHLQAAGINQVISSAQLKLSVLGQSCLCPGWSAVVANLLES 180
            RRQG GPRLLVEL+DPNA+LHLQAAGI  V+SSAQ+KLSVL QSCLCPGW+AVVANLLES
Sbjct:  516 RRQGCGPRLLVELVDPNAALHLQAAGIKHVVSSAQVKLSVLAQSCLCPGWAAVVANLLES 575
[Close]
BLAST of mRNA_S-dermatodea_contig89565.17040.1 vs. uniprot
Match: A0A6H5LKR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKR1_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.020e-25
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 RRQGYGPRLLVELIDPNASLHLQAAGINQVISSAQLKLSVLGQSCLCPGWSAVVANLLES 180
            RRQG GPRLLVEL+DPNA+LHLQAAGI  V+SSAQ+KLSVL QSCLCPGW+AVVANLLES
Sbjct:  528 RRQGCGPRLLVELVDPNAALHLQAAGIKHVVSSAQVKLSVLAQSCLCPGWAAVVANLLES 587
[Close]
BLAST of mRNA_S-dermatodea_contig89565.17040.1 vs. uniprot
Match: A0A7R9UDC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDC3_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.560e-12
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 RRQGYGPRLLVELIDPNASLHLQAAGINQVISSAQLKLSVLGQSCLCPGWSAVVANLLES 180
            RR G GPR+  ELI P A+ HL+ AG+  V+ +  LKLS+L  SCLCPG S ++ NL+ S
Sbjct:  509 RRNGSGPRVFTELIQPQATRHLRTAGLRHVVCTDALKLSLLAHSCLCPGLSTLLVNLMRS 568
[Close]
BLAST of mRNA_S-dermatodea_contig89565.17040.1 vs. uniprot
Match: A0A7S1GD92_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GD92_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.420e-7
Identity = 22/52 (42.31%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 LLVELIDPNASLHLQAAGINQVISSAQLKLSVLGQSCLCPGWSAVVANLLES 180
            +LV+L+ P + L++ + G+N V+   +L+LS++ QSCLCPG+S ++ NL+ S
Sbjct:  331 VLVQLMRPASKLNVNSVGVNLVVCQDELRLSLMAQSCLCPGFSTMIVNLVRS 382
[Close]
BLAST of mRNA_S-dermatodea_contig89565.17040.1 vs. uniprot
Match: A0A5B8MSS4_9CHLO (Calcium-activated potassium channel protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MSS4_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 1.770e-6
Identity = 21/57 (36.84%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   22 RLLVELIDPNASLH----LQAAGINQVISSAQLKLSVLGQSCLCPGWSAVVANLLES 180
            ++++++I P   LH    +Q + I+Q++   ++K+S+LGQ+CLCPG+S ++ NL++S
Sbjct:  419 QVILQIIRPENKLHFIASMQQSEIDQIVCINEIKMSMLGQNCLCPGFSTLIGNLIQS 475
[Close]
BLAST of mRNA_S-dermatodea_contig89565.17040.1 vs. uniprot
Match: L1JCR4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JCR4_GUITC)

HSP 1 Score: 49.7 bits (117), Expect = 2.180e-5
Identity = 23/64 (35.94%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    1 RRQGYGPRLLVELIDPNASLHLQAAGIN----QVISSAQLKLSVLGQSCLCPGWSAVVANLLES 180
            RR G   R++++L+ P    HL  +       Q+I   ++K+++LG+SCLCPG+S +++NL+ S
Sbjct:  405 RRPGEDIRIILQLLRPENRHHLNVSTCGGTDVQIICMDEIKMNLLGKSCLCPGFSTLISNLMIS 468
[Close]
BLAST of mRNA_S-dermatodea_contig89565.17040.1 vs. uniprot
Match: F4PHS0_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PHS0_CAVFA)

HSP 1 Score: 48.5 bits (114), Expect = 5.580e-5
Identity = 22/52 (42.31%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   25 LLVELIDPNASLHLQAAGINQVISSAQLKLSVLGQSCLCPGWSAVVANLLES 180
            +  ++++PN    +  AG  QVIS  +LK+ +L QSCL PG+S ++ NLL S
Sbjct:  594 IYAQVMNPNYKKQMYDAGATQVISIQELKMMMLAQSCLSPGFSTLMMNLLRS 645
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig89565.17040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FKC7_ECTSI1.020e-2585.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LKR1_9PHAE1.020e-2585.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9UDC3_9STRA2.560e-1251.67Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1GD92_9STRA1.420e-742.31Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5B8MSS4_9CHLO1.770e-636.84Calcium-activated potassium channel protein n=1 Ta... [more]
L1JCR4_GUITC2.180e-535.94Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
F4PHS0_CAVFA5.580e-542.31Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig89565contigS-dermatodea_contig89565:145..324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue5.1e-21
Seed eggNOG ortholog2880.D7FKC7
KEGG koko:K04936
KEGG TC1.A.1.3.1,1.A.1.3.2,1.A.1.3.3
KEGG Pathwayko04022,ko04270,ko04911,ko04924,ko04970,ko04972,map04022,map04270,map04911,map04924,map04970,map04972
EggNOG free text desc.large conductance calcium-activated potassium channel activity
EggNOG OGsKOG1420@1,KOG1420@2759
Ec32 ortholog descriptionPotassium channel, calcium-activated, BK, alpha subunit
Ec32 orthologEc-05_005710.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925374.8129988-CDS-S-dermatodea_contig89565:144..3241622925374.8129988-CDS-S-dermatodea_contig89565:144..324Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89565 145..324 +
1694079890.3757482-CDS-S-dermatodea_contig89565:144..3241694079890.3757482-CDS-S-dermatodea_contig89565:144..324Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89565 145..324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig89565.17040.1prot_S-dermatodea_contig89565.17040.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig89565 145..324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig89565.17040.1

>prot_S-dermatodea_contig89565.17040.1 ID=prot_S-dermatodea_contig89565.17040.1|Name=mRNA_S-dermatodea_contig89565.17040.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=60bp
RRQGYGPRLLVELIDPNASLHLQAAGINQVISSAQLKLSVLGQSCLCPGW
SAVVANLLES
back to top

mRNA from alignment at S-dermatodea_contig89565:145..324+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig89565.17040.1 ID=mRNA_S-dermatodea_contig89565.17040.1|Name=mRNA_S-dermatodea_contig89565.17040.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at S-dermatodea_contig89565:145..324+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGAGGCAGGGTTACGGCCCCCGCCTGCTGGTGGAGCTGATCGACCCCAA
CGCCTCTCTTCACCTCCAAGCCGCCGGCATCAACCAGGTCATCAGCAGCG
CACAGCTGAAGCTGAGCGTGCTGGGACAGTCGTGTCTTTGCCCCGGGTGG
TCAGCCGTCGTTGCGAACCTGCTCGAGTCC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig89565:145..324+

>mRNA_S-dermatodea_contig89565.17040.1 ID=mRNA_S-dermatodea_contig89565.17040.1|Name=mRNA_S-dermatodea_contig89565.17040.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at S-dermatodea_contig89565:145..324+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGAGGCAGGGTTACGGCCCCCGCCTGCTGGTGGAGCTGATCGACCCCAA
CGCCTCTCTTCACCTCCAAGCCGCCGGCATCAACCAGGTCATCAGCAGCG
CACAGCTGAAGCTGAGCGTGCTGGGACAGTCGTGTCTTTGCCCCGGGTGG
TCAGCCGTCGTTGCGAACCTGCTCGAGTCCAGGAGGCAGGGTTACGGCCC
CCGCCTGCTGGTGGAGCTGATCGACCCCAACGCCTCTCTTCACCTCCAAG
CCGCCGGCATCAACCAGGTCATCAGCAGCGCACAGCTGAAGCTGAGCGTG
CTGGGACAGTCGTGTCTTTGCCCCGGGTGGTCAGCCGTCGTTGCGAACCT
GCTCGAGTCC
back to top