mRNA_S-dermatodea_contig8953.17036.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8953.17036.1
Unique NamemRNA_S-dermatodea_contig8953.17036.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8953.17036.1 vs. uniprot
Match: D8LE96_ECTSI (Ubiquitin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE96_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.340e-36
Identity = 101/196 (51.53%), Postives = 122/196 (62.24%), Query Frame = 1 
Query:    1 VESSADYGVQVEMLDL---AGVMLPSGGGA---IAGVSPLGAWRRFWRVTNHRLDSVNFTFMINPTPSQPESVYPYAWLNYVIPPLLREIKLLLKPRDTQIILEVDKIDLTREFGQCRFDWVFEAAP-----TESSV-------------------VPVQVA----AASDLLQEKAQLEGDLGEAARVALAAERQE 486
            VESS   GVQVEMLD    A +ML +GGG    +AG  PL   +RFWRVTNHR+DSV FTF I PTPS+ ++VYP    NY +P   R++ LLLKPR+T  I+EVDK+DLTREF    F+WVFEA P     TE +                    VP  V      ASDLL+++AQLEGDLGEAARVAL  E++E
Sbjct: 3666 VESSTSNGVQVEMLDATDTAMMMLGAGGGGHMTMAGGFPL---KRFWRVTNHRMDSVTFTFKIEPTPSRLDTVYPSRRPNYHVP-AGRDVTLLLKPRETAGIMEVDKLDLTREFQPHPFNWVFEALPETPTATEGAATAPXXXXXXXXXXXXXGEAVPTTVLPTALTASDLLEKQAQLEGDLGEAARVALKLEQEE 3857
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8953.17036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE96_ECTSI1.340e-3651.53Ubiquitin domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8953contigS-dermatodea_contig8953:997..3624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue4.1e-33
Seed eggNOG ortholog2880.D8LE96
KEGG koko:K11840,ko:K11869
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons4
Model size490
Cds size486
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8953.17036.1prot_S-dermatodea_contig8953.17036.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8953 997..3622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925374.5557754-CDS-S-dermatodea_contig8953:996..10261622925374.5557754-CDS-S-dermatodea_contig8953:996..1026Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8953 997..1026 +
1694079890.248451-CDS-S-dermatodea_contig8953:996..10261694079890.248451-CDS-S-dermatodea_contig8953:996..1026Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8953 997..1026 +
1622925374.5666463-CDS-S-dermatodea_contig8953:1642..17381622925374.5666463-CDS-S-dermatodea_contig8953:1642..1738Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8953 1643..1738 +
1694079890.2683156-CDS-S-dermatodea_contig8953:1642..17381694079890.2683156-CDS-S-dermatodea_contig8953:1642..1738Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8953 1643..1738 +
1622925374.5790582-CDS-S-dermatodea_contig8953:2379..25821622925374.5790582-CDS-S-dermatodea_contig8953:2379..2582Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8953 2380..2582 +
1694079890.2779703-CDS-S-dermatodea_contig8953:2379..25821694079890.2779703-CDS-S-dermatodea_contig8953:2379..2582Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8953 2380..2582 +
1622925374.5996106-CDS-S-dermatodea_contig8953:3465..36221622925374.5996106-CDS-S-dermatodea_contig8953:3465..3622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8953 3466..3622 +
1694079890.2872143-CDS-S-dermatodea_contig8953:3465..36221694079890.2872143-CDS-S-dermatodea_contig8953:3465..3622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8953 3466..3622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8953.17036.1

>prot_S-dermatodea_contig8953.17036.1 ID=prot_S-dermatodea_contig8953.17036.1|Name=mRNA_S-dermatodea_contig8953.17036.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=162bp
VESSADYGVQVEMLDLAGVMLPSGGGAIAGVSPLGAWRRFWRVTNHRLDS
VNFTFMINPTPSQPESVYPYAWLNYVIPPLLREIKLLLKPRDTQIILEVD
KIDLTREFGQCRFDWVFEAAPTESSVVPVQVAAASDLLQEKAQLEGDLGE
AARVALAAERQE
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mRNA from alignment at S-dermatodea_contig8953:997..3624+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8953.17036.1 ID=mRNA_S-dermatodea_contig8953.17036.1|Name=mRNA_S-dermatodea_contig8953.17036.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2628bp|location=Sequence derived from alignment at S-dermatodea_contig8953:997..3624+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGAGAGCTCGGCCGATTACGGAGTGCAGGCGCGTGGTTGTGTTGTGTT
GTGTTGTGTTGTGCGGGCGCTTTTGATGGGTCAACTTATGGCGGGCGCGT
CATGCATGGCCGTGTTTTCTTTTTTCCTCATATTTTCGGTGAGGGAGCAC
TCGCGCTTATAGCGTATGTAGCCTCGTGCGTGTATTTTGTTTCGCATTTA
ATGCTGTGAATGAGGGGGGTTGTGTTGTGTCGGCGCGAGAGAGGCCTGGC
GCTCTGTCGTTCGATTGCGCTGTTTTTGTGGGGGGGGGGAGGGGGTCGTG
TCTGTTGGCTGTTGATGTTGTTCTCTAGGGTTGGTGTTTGGCAGTTAACT
GATGTACTGAACGATTGGGCGAATGCGGCGAGGACCTACTGTGAGTGTTG
CCTGCTAGACAGGCTTGCGCGCGCTCAGCAAGCTCGTCAAGCTGTCCGCC
AGGCACATGAATACCATTAACACTACCTCCAACCAAGGAACACAAGAACA
CTTATTCGTCTACTATTCTTGTACTGTCTGCAGCGTGTGTGGCATTCCCC
GCCTTGGACACACTCTAGCACGGTCATTTGACGCACTTTTTATAACATGG
CTAAGCAGAATGATGCCTGTCTTGTGTGTTACGACCGCTCCTCCAGGTGG
AGATGCTTGATCTGGCAGGTGTCATGCTACCCTCGGGGGGGGGGGCTATC
GCCGGAGTTTCTCCGTTGGGAGCATGGAGGCGTTTTTGGCGGGTGAGCGA
GCCGTTTCACAGCAAGTACATGTATGCGCCCCCACGTACAGGTATTGATT
GGTTGATTGATTGATTGATTGATTGATTTGTTGATTATCACACTTACAAC
GGACCGGCCCGCCAATGGTTACCGATCCCGCTCATGGTCGGATGAGAAAT
CGAGAAGTCGAAAAAACTAACGGAACTGCCTATATAGTACCTGGTACGTG
ATAAATACTCAACGCAAATAAACGGTATGAATCAGACGGAACGTACCTCG
GAACGTGGGTCTGCTTATATACTGTAGGCGTTATCATAAAGCAGGCGATG
TGCGTGTGAAACTAATGTAGAGAGCAAAGCGCGGCCTGGAATGGTTTGTC
TTGAGTGGGGAGATCGGTCTACTCACCGCTCTACTGTCGATGAGAGGTTC
TCTTTCTCGCTGGTGAGGGCATATAGTATATACACACCCCGCCCGTACCC
TGGCCTTGGACGGCATGTGCACTATGATAGAGCTCTATCCAGGTTGGGCG
GCTTTCGACTTCCGAGCCACCATGCCTCTGTGCGCATTGCTGCATGATGA
ACCCAACTCGTCTCTGCAAACAAGTGACCCCACCCCCCCACCCCCTCTAC
CGGCACTGCTACCCTAATGCACTCTCCCGCTAGGTGACGAATCACCGATT
GGACAGCGTGAACTTCACTTTCATGATCAACCCCACCCCGTCGCAACCGG
AATCGGTGTATCCTTACGCTTGGCTAAATTACGTCATACCGCCCCTGCTG
CGCGAGATCAAGCTTCTCCTAAAGCCGCGAGACACCCAGATCATCCTCGA
GGTGGACAAGATCGACCTCACCCGAGAATTCGGCCAGTGAGTGTGTGTGG
GTTGTCCGCGCCTGGCGTGTTATGACGCGCCCCACGTCACCCTGCTGAGG
TGTACTATTGATTAGTATTATGGGGCACAGCTGTATTATTAGTATTATTA
CTAGCACAACTGACAGTCATAGGACCAAATCTGCTAAAAGGTTTCCGCAA
CCAGTAGACGAACTTCTGAAAAACTCAAGTCTGACCGTGAGAGCTCTACA
ACATATACGATATAATACAATATATGATATACTGTAATACGATGTTCCGG
CCAAGAGTCGTGTCTTGTCGAGAAAACAATCAATTCCGAAGAAGACGATC
GGGGCTTTGGACCATTGCTGCTTTCTTAGCAGCTCAACATTATTTTCTGT
TACCTATGCCCTACCGTGAAAAGCCCATGTTGGACGTCCCGCGTGAGTTT
GTGTGTTTGCTTTTGTTTGTGCGGAAGGCCATTGCGGTGCTGTTTTTTGC
GGTTATCTGGATGCCGCCGGCAACTCTCAGTAATAATACGGTCGGATGAT
GTGAAGGATGGGGTGCGGCTTGGAACGTGCGATGAGCATGAGTACAGTAG
AACATCCTCGTGGCCGTCTGTCTGTCTCTCCCTCGGAGCATGCTTGCGTT
GCTTCGGGCTTACCAATAATGGCGTACCCCACCCGTACAGTAAACTCCTT
TTTCACTTATCAATTTCCCGTCCTCGAAAAAAAAAAATGTTTTTCCCCTC
CTCGAAAAACCACAAACAGCTGTTTTTCGTTTTTCCCTTCTCATGGAAAC
CATCAAATTCAAACACACAAAAACACGCTAATGTCGTCGTTTTCTTTTTC
GTTTTCGTCACCTCTGCCACCCTTCGCCCACCCGCCCACGCGCCCACCCG
CCCACCCGCCCACCTCCAGGTGTCGCTTCGACTGGGTGTTCGAGGCCGCG
CCGACGGAAAGCAGCGTGGTTCCGGTTCAGGTAGCGGCCGCTTCCGACCT
CCTCCAAGAAAAAGCCCAGCTCGAGGGAGACTTGGGCGAGGCGGCGAGGG
TGGCTCTGGCGGCGGAGCGACAAGAGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8953:997..3624+

>mRNA_S-dermatodea_contig8953.17036.1 ID=mRNA_S-dermatodea_contig8953.17036.1|Name=mRNA_S-dermatodea_contig8953.17036.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at S-dermatodea_contig8953:997..3624+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGAGAGCTCGGCCGATTACGGAGTGCAGGTCGAGAGCTCGGCCGATTA
CGGAGTGCAGGTGGAGATGCTTGATCTGGCAGGTGTCATGCTACCCTCGG
GGGGGGGGGCTATCGCCGGAGTTTCTCCGTTGGGAGCATGGAGGCGTTTT
TGGCGGGTGGAGATGCTTGATCTGGCAGGTGTCATGCTACCCTCGGGGGG
GGGGGCTATCGCCGGAGTTTCTCCGTTGGGAGCATGGAGGCGTTTTTGGC
GGGTGACGAATCACCGATTGGACAGCGTGAACTTCACTTTCATGATCAAC
CCCACCCCGTCGCAACCGGAATCGGTGTATCCTTACGCTTGGCTAAATTA
CGTCATACCGCCCCTGCTGCGCGAGATCAAGCTTCTCCTAAAGCCGCGAG
ACACCCAGATCATCCTCGAGGTGGACAAGATCGACCTCACCCGAGAATTC
GGCCAGTGACGAATCACCGATTGGACAGCGTGAACTTCACTTTCATGATC
AACCCCACCCCGTCGCAACCGGAATCGGTGTATCCTTACGCTTGGCTAAA
TTACGTCATACCGCCCCTGCTGCGCGAGATCAAGCTTCTCCTAAAGCCGC
GAGACACCCAGATCATCCTCGAGGTGGACAAGATCGACCTCACCCGAGAA
TTCGGCCAGTGTCGCTTCGACTGGGTGTTCGAGGCCGCGCCGACGGAAAG
CAGCGTGGTTCCGGTTCAGGTAGCGGCCGCTTCCGACCTCCTCCAAGAAA
AAGCCCAGCTCGAGGGAGACTTGGGCGAGGCGGCGAGGGTGGCTCTGGCG
GCGGAGCGACAAGAGGTGTCGCTTCGACTGGGTGTTCGAGGCCGCGCCGA
CGGAAAGCAGCGTGGTTCCGGTTCAGGTAGCGGCCGCTTCCGACCTCCTC
CAAGAAAAAGCCCAGCTCGAGGGAGACTTGGGCGAGGCGGCGAGGGTGGC
TCTGGCGGCGGAGCGACAAGAG
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