mRNA_S-dermatodea_contig8952.17035.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8952.17035.1
Unique NamemRNA_S-dermatodea_contig8952.17035.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8952.17035.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 2.220e-94
Identity = 140/233 (60.09%), Postives = 174/233 (74.68%), Query Frame = 3 
Query:  369 RPFTVGWTGAPEDARFDVDLHYCGSYSFCFDEEDGCGFFIASLCDQEGVGCELDEDGGHEVTMPEPIAGISGDGYRVRISQVGMDRQRCSEDFFLMASADAPMVGEPGGPSIEVVAPNSLSMAVAGEEYTVEFDYDNGFGSRVGRFKIDLYADMGQGDCGAWVVSVCDKPNSGCHDTQGDYNVVIPATTTAGVYRIRVGLFGDDSVFGCSQPFEVAPE-------GEDLWQAS 1046
            RP+ V W GA  D RF+VDLHYCGSYSFCF E + CGF+IA++C++    C + +D   +VT PEP+AG S +GYRVRIS+VG D  RCSEDF+L+ASAD    GEPGGP++EVVAP + ++AVAGE YTVEFDYDNGFG ++GRFKIDLY   G GDCG+WV SVCDKP+ GC D++GDY+VVIPA +  G+Y+IRVGLFGDDS++ CS  FE+          G  LW  S
Sbjct:   40 RPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGVLAAGGGLWMDS 272
[Close]
BLAST of mRNA_S-dermatodea_contig8952.17035.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 3.140e-90
Identity = 135/225 (60.00%), Postives = 173/225 (76.89%), Query Frame = 3 
Query:  369 RPFTVGWTGAPEDARFDVDLHYCGSYSFCFDEEDGCGFFIASLCDQ-EGVGCELDEDGGHEVTMPEPIAGISGDGYRVRISQVGMDRQRCSEDFFLMASADAPMVGEPGGPSIEVVAPNSLSMAVAGEEYTVEFDYDNGFGSRVGRFKIDLYADMGQ---GDCGAWVVSVCDKPNSGCHDTQGDYNVVIPATTTAGVYRIRVGLFGDDSVFGCSQPFEVAPEGED 1031
            RP+ V W GA  D RF++DLHYCGSYS+CF+E + CGF++A++C + +G GC    D   +VT PEP+ G S +GYR+RI++VG D  RCS+DF+LM+SADAP VGE GGP+IEVVAP + ++A+AGE YTVEFDYDNGFG ++GRFKIDLY  +G+   GDCG WV SVCDKP+ GC D+QGDYNVVIP  +  G+Y+IRVGLFGDD+++ CS  FEV     D
Sbjct:   41 RPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAE-CGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSDTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAAD 264
[Close]
BLAST of mRNA_S-dermatodea_contig8952.17035.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 285 bits (730), Expect = 3.990e-87
Identity = 132/224 (58.93%), Postives = 168/224 (75.00%), Query Frame = 3 
Query:  363 AERPFTVGWTGAPEDARFDVDLHYCGSYSFCFDEEDGCGFFIASLCDQEGVGCELDEDGGHEVTMPEPIAGISGDGYRVRISQVGMDRQRCSEDFFLMASADAPMVGEPGGPSIEVVAPNSLSMAVAGEEYTVEFDYDNGFGSRVGRFKIDLYADMGQGDCGAWVVSVCDKPNSGCHDTQGDYNVVIPATTTAGVYRIRVGLFGDDSVFGCSQPFEVAPEGEDL 1034
            ++ P+ V W GA  D RF++DLHYCGSYSFCF+E D CGF++ +LC +    C   +D   +VT+PEP+ G S  GYRVRI +VG +  RCS++F+LM+SADA    +  GP++EVVAP+S ++AVAG  YTVEFDYDNGFG++ GRFKIDLY   G GDCG WV SVCDKP+ GCHDT+GDY++VIP  +  G+Y+IRVGLFGDDSVF CS  FEV PE + L
Sbjct:   38 SDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVGTETFRCSDEFYLMSSADA---SDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVPETQGL 258
[Close]
BLAST of mRNA_S-dermatodea_contig8952.17035.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 1.520e-68
Identity = 116/230 (50.43%), Postives = 156/230 (67.83%), Query Frame = 3 
Query:  363 AERPFTVGWTGAPEDARFDVDLHYCGSYSFCFDEEDGCGFFIASLCDQEGVGCELDEDGGHEVTMPEPIAGISGDGYRVRISQVGMDRQR-CSEDFFLMASADAPMVGEPGGPSIEVVAPNSLSMAVAGEEYTVEFDYDNGFGSRVGRFKIDLYADMGQGDCGAWVVSVCDKPNSGCHDTQGDYNVVIPATTTAGVYRIRVGLFGDDSVFGCSQPFEV-----APEGEDL 1034
            A R +TV WTG   + R+++DL+YCGS   C ++E  CG ++ +LC     GC  D +G +++ MPEP++G SG GY+VR++ V  D    CS++F+LMA A+AP  G+ GGP + V +P+S   A AGEEYTVEFDYDNG GS VGRF IDLY+  G GDCG ++ ++CDKP  GC D+ GDY+V IP    AG+Y IRVG F DDSV+GCS  FE+     +P+  DL
Sbjct:   21 ASRAYTVEWTGTGSNNRYEIDLYYCGS--MCMEDE--CGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPDDGDL 245
[Close]
BLAST of mRNA_S-dermatodea_contig8952.17035.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 1.270e-66
Identity = 110/218 (50.46%), Postives = 149/218 (68.35%), Query Frame = 3 
Query:  363 AERPFTVGWTGAPEDARFDVDLHYCGSYSFCFDEEDGCGFFIASLCDQEGVGCELDEDGGHEVTMPEPIAGISGDGYRVRISQVG-MDRQRCSEDFFLMASADAPMVGEPGGPSIEVVAPNSLSMAVAGEEYTVEFDYDNGFGSRVGRFKIDLYADMGQGDCGAWVVSVCDKPNSGCHDTQGDYNVVIPATTTAGVYRIRVGLFGDDSVFGCSQPFEV 1013
            + R +TV W+G   + RF++DL+YC S   C ++E  CG ++ +LC     GC  D +G +++ MPEP++G SG GY+VR++ V   D   CS++F+LMA ADAP   + GGP + V +P++   A AGEEYTVEFDYDNG GS VGRF IDLYA  G GDCG ++ ++CDKP  GC D+ GDY+V IP    AG+Y IRVG F D+SV+GCS  FE+
Sbjct:   34 SSRAYTVEWSGTGSNKRFEIDLYYCNS--MCMEDE--CGEWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEI 246
[Close]
BLAST of mRNA_S-dermatodea_contig8952.17035.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 3.320e-65
Identity = 112/224 (50.00%), Postives = 150/224 (66.96%), Query Frame = 3 
Query:  363 AERPFTVGWTGAPEDARFDVDLHYCGSYSFCFDEEDGCGFFIASLCDQEGVGCELDEDGGHEVTMPEPIAGISGDGYRVRISQVGMDRQR-CSEDFFLMASADAPMVGEPGGPSIEVVAPNSLSMAVAGEEYTVEFDYDNGFGSRVGRFKIDLYADMGQGDCGAWVVSVCDKPNSGCHDTQGDYNVVIPATTTAGVYRIRVGLFGDDSVFGCSQPFEVAPEGED 1031
            A+R +TV WTG   D RF++DL+YCGS   C   ED CG ++ +LC     GC  D +G +++ MPEP+ G SG GY+VR+  +  +    CS++F+L+AS++AP VG+  GP++EV +P S  +A    EYTVEFDYDNG GS V RF IDLY   G+GDCG +V S+CDKP  GC D+ GDY+V IP  T AG Y+IRV  F DDS++ CS  F +  EG+D
Sbjct:   33 ADRTYTVEWTGTSSDNRFEIDLYYCGS--MCM--EDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIE-EGDD 250
[Close]
BLAST of mRNA_S-dermatodea_contig8952.17035.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 8.900e-63
Identity = 111/218 (50.92%), Postives = 144/218 (66.06%), Query Frame = 3 
Query:  363 AERPFTVGWTGAPEDARFDVDLHYCGSYSFCFDEEDGCGFFIASLCDQEGVGCELDEDGGHEVTMPEPIAGISGDGYRVRISQVG-MDRQRCSEDFFLMASADAPMVGEPGGPSIEVVAPNSLSMAVAGEEYTVEFDYDNGFGSRVGRFKIDLYADMGQGDCGAWVVSVCDKPNSGCHDTQGDYNVVIPATTTAGVYRIRVGLFGDDSVFGCSQPFEV 1013
            A+R +TV WTGA +  RF++DL++CGS   C   ED CG ++ +LC     GC  D +G +++ MPEP++G S  GY+VR+  V   D   CS+ F+LMAS DAP  G   G  + V +P     A AGEEYTVEFDYDNG GS+V RF IDLY   G GDCG +V S+CDKP+ GC D+ GDY+V IPA T AG Y+IRVG F D+ ++GCS  F +
Sbjct:   33 ADRTYTVEWTGA-DSGRFEIDLYHCGS--MCM--EDSCGDWVTALCPYGEEGCP-DNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTI 244
[Close]
BLAST of mRNA_S-dermatodea_contig8952.17035.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 5.480e-58
Identity = 107/218 (49.08%), Postives = 142/218 (65.14%), Query Frame = 3 
Query:  363 AERPFTVGWTGAPEDARFDVDLHYCGSYSFCFDEEDGCGFFIASLCDQEGVGCELDEDGGHEVTMPEPIAGISGDGYRVRISQVGMDRQR-CSEDFFLMASADAPMVGEPGGPSIEVVAPNSLSMAVAGEEYTVEFDYDNGFGSRVGRFKIDLYADMGQGDCGAWVVSVCDKPNSGCHDTQGDYNVVIPATTTAGVYRIRVGLFGDDSVFGCSQPFEV 1013
            A+  +TV WTGA    R+D+DL+YCGS       ED CG ++ +LC     GC  D  G ++V MPEP+ G S  GY+V ++    +    CS DF L+AS +AP   + G   + V +P+    A+AG EYTVEFDYDNG GS V RF IDLY+  G GDCG +V ++CDKP+ GC D+QGDY+VVIP+ T +G+Y IRVG+F DD V+GCS  FE+
Sbjct:   33 ADSAYTVEWTGATS-GRYDIDLYYCGSVCM----EDECGDWVTALCPYGDDGCP-DTQGDYDVVMPEPMDGTSS-GYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEI 242
[Close]
BLAST of mRNA_S-dermatodea_contig8952.17035.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 2.060e-55
Identity = 105/218 (48.17%), Postives = 143/218 (65.60%), Query Frame = 3 
Query:  363 AERPFTVGWTGAPEDARFDVDLHYCGSYSFCFDEEDGCGFFIASLCDQEGVGCELDEDGGHEVTMPEPIAGISGDGYRVRISQVGMDRQR-CSEDFFLMASADAPMVGEPGGPSIEVVAPNSLSMAVAGEEYTVEFDYDNGFGSRVGRFKIDLYADMGQGDCGAWVVSVCDKPNSGCHDTQGDYNVVIPATTTAGVYRIRVGLFGDDSVFGCSQPFEV 1013
            A+R +TV WTG     RF++DL+YC S  FC D  D CG ++ +LC     GC  D  G +++ MPEP++G S  GY+V +     +    CS+DF L+AS DAP  GE G  S+ V +P+    A+AGE YTVE+DY+NGFGS   RF +DLY   G GDCG +V ++CD+P+ GC D+QGDY+V IP+ T AG+Y IRVG+F D+ ++ CS  FEV
Sbjct:   33 ADRAYTVEWTGTTT-GRFEIDLYYCNS--FCMD--DVCGDWVTALCPYGADGCP-DSAGDYDIIMPEPMSGTSS-GYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242
[Close]
BLAST of mRNA_S-dermatodea_contig8952.17035.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 1.830e-54
Identity = 98/184 (53.26%), Postives = 130/184 (70.65%), Query Frame = 3 
Query:  465 EDGCGFFIASLCDQEGVGCELDEDGGHEVTMPEPIAGISGDGYRVRISQV-GMDRQRCSEDFFLMASADAPMVGEPGGPSIEVVAPNSLSMAVAGEEYTVEFDYDNGFGSRVGRFKIDLYADMGQGDCGAWVVSVCDKPNSGCHDTQGDYNVVIPATTTAGVYRIRVGLFGDDSVFGCSQPFEV 1013
            ED CG ++ +LC     GC  D +G +++ MPEP++G SG GY+VR++ V G     CS++F+LMASA+AP+VG P  P + V +P++   A AG EYTVEFDYDNG GSRV RFKIDLY+  G GDCG WV+++CDK   GC D+ GDY+V IP T   G+Y IRVG F DD+++GCS  FE+
Sbjct:   13 EDECGEWVTALCPYGSEGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEI 195
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8952.17035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KPZ5_9PHAE2.220e-9460.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LEQ9_ECTSI3.140e-9060.00EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE... [more]
D7FN59_ECTSI3.990e-8758.93EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LI46_ECTSI1.520e-6850.43EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JFT9_9PHAE1.270e-6650.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRG9_9PHAE3.320e-6550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI8.900e-6350.92EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7G3E8_ECTSI5.480e-5849.08Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JY62_9PHAE2.060e-5548.17GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
A0A6H5JEJ8_9PHAE1.830e-5453.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8952contigS-dermatodea_contig8952:2944..8663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size2397
Cds size798
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925374.421523-UTR-S-dermatodea_contig8952:2943..42881622925374.421523-UTR-S-dermatodea_contig8952:2943..4288Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8952 2944..4288 -
1694079890.1625938-UTR-S-dermatodea_contig8952:2943..42881694079890.1625938-UTR-S-dermatodea_contig8952:2943..4288Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8952 2944..4288 -
1622925374.48876-UTR-S-dermatodea_contig8952:8409..86631622925374.48876-UTR-S-dermatodea_contig8952:8409..8663Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8952 8410..8663 -
1694079890.2165666-UTR-S-dermatodea_contig8952:8409..86631694079890.2165666-UTR-S-dermatodea_contig8952:8409..8663Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8952 8410..8663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925374.4318633-CDS-S-dermatodea_contig8952:4288..44401622925374.4318633-CDS-S-dermatodea_contig8952:4288..4440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8952 4289..4440 -
1694079890.173953-CDS-S-dermatodea_contig8952:4288..44401694079890.173953-CDS-S-dermatodea_contig8952:4288..4440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8952 4289..4440 -
1622925374.4418333-CDS-S-dermatodea_contig8952:5220..53561622925374.4418333-CDS-S-dermatodea_contig8952:5220..5356Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8952 5221..5356 -
1694079890.1827376-CDS-S-dermatodea_contig8952:5220..53561694079890.1827376-CDS-S-dermatodea_contig8952:5220..5356Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8952 5221..5356 -
1622925374.4543643-CDS-S-dermatodea_contig8952:5826..61261622925374.4543643-CDS-S-dermatodea_contig8952:5826..6126Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8952 5827..6126 -
1694079890.191407-CDS-S-dermatodea_contig8952:5826..61261694079890.191407-CDS-S-dermatodea_contig8952:5826..6126Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8952 5827..6126 -
1622925374.4681542-CDS-S-dermatodea_contig8952:7361..74551622925374.4681542-CDS-S-dermatodea_contig8952:7361..7455Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8952 7362..7455 -
1694079890.2001123-CDS-S-dermatodea_contig8952:7361..74551694079890.2001123-CDS-S-dermatodea_contig8952:7361..7455Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8952 7362..7455 -
1622925374.4774013-CDS-S-dermatodea_contig8952:8293..84091622925374.4774013-CDS-S-dermatodea_contig8952:8293..8409Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8952 8294..8409 -
1694079890.2084727-CDS-S-dermatodea_contig8952:8293..84091694079890.2084727-CDS-S-dermatodea_contig8952:8293..8409Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8952 8294..8409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8952.17035.1prot_S-dermatodea_contig8952.17035.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8952 4289..8409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8952.17035.1

>prot_S-dermatodea_contig8952.17035.1 ID=prot_S-dermatodea_contig8952.17035.1|Name=mRNA_S-dermatodea_contig8952.17035.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=266bp
MISGVAMAAAVAGMLSAATLTEALTVVAPSEGMTVVAERPFTVGWTGAPE
DARFDVDLHYCGSYSFCFDEEDGCGFFIASLCDQEGVGCELDEDGGHEVT
MPEPIAGISGDGYRVRISQVGMDRQRCSEDFFLMASADAPMVGEPGGPSI
EVVAPNSLSMAVAGEEYTVEFDYDNGFGSRVGRFKIDLYADMGQGDCGAW
VVSVCDKPNSGCHDTQGDYNVVIPATTTAGVYRIRVGLFGDDSVFGCSQP
FEVAPEGEDLWQASP*
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mRNA from alignment at S-dermatodea_contig8952:2944..8663-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8952.17035.1 ID=mRNA_S-dermatodea_contig8952.17035.1|Name=mRNA_S-dermatodea_contig8952.17035.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5720bp|location=Sequence derived from alignment at S-dermatodea_contig8952:2944..8663- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAACAAACTGCCAGCTCCCACATCCTACCCTCCTTCCCCCAGTGCACCA
CCTGTTCTCACTCTTGCCTCCATCCCACAACCCACCTTCTCTCGTCGGCA
TCAGAGCAGCTCAAGCTACACCCTTATCCTCTAGGCCCGTGCCGTTGCAA
CATCGATACATCTCCCGTCAAGCTTCTCGCAGCAGCACACCAACAACAGG
AGCAGCAGCAGCAACAGCAGCAGCAGCAGGCAAAGCAGCAACCAAAGCAG
CAAGATGATCTCTGGGGTGGCTATGGCGGCGGCTGTTGCGGGGATGCTCA
GCGCTGCGACCTTGACCGAGGCGCTGACGGTGGTGGCTCCGTCCGAGGGC
ATGACGGTCGTGGCTGAGAGGTGAGCGCGTGTGGGTCGCGGTCGGCGAGC
TCTTTTCTTGTCTGGTGCACCCGGTGCACAACCTAGTACTGTACGTTGTC
GATGAGAGCTATTTATGCTATTAATAGCTGTGATTTGTTTTGGTTTGTTC
CACGAGCAGAGAGCTCTGACGAGCCTCTCGTGCTGCTGTGCGCTGCATCT
GCTGAGCGCGTGTGGGTCGCCGTCGGCGAGCTCTTTTCTATGCACCCGGT
GCACAACCTCTACTTTGTCCGTGCGGTACAGCAGTACAGCAGTTCATCCC
GTGTATACATACGCACACCATGTACAAGTATGTGATAGCTGTGATTTGAT
TTGATTTGTTTCGATTCGTTCCACAAGCAGAGAGCTCTGACGAGCCTCTC
GTGCTTTCTGCTGTTGTTGTTGCTGCATCTACTATTATAATAGGAACCAG
CAGACAGGGAACACTTTATCTATAAGTAGAGACCGCAGAGGCCGGCTCGG
GTGGAGTTTATGCTTTACTGCAAGGGTGGAGGGCTCTCAAATAGCGCTGC
TTCATTGCTCTACTTTGTGCGTAGTTTATTTTAGTATCATACACTTATTA
TAATTGGAGTCGAGAGTGGGTATGGTTTTCGATAAATCTATTGCTGCAAA
TGCAACGGCGGTCCTTGGATCGAACTTTTTTATCACCGACATGGATTGCT
GCAAACTCGTGAATACGCAAGCAACAGCTCGGCACCGCCGTTTGGTACGC
GCGAGACTAACGTGCTAAGTAATAATAATAACTACTTGAATACTCCTTTA
CTTTTGTCTAACGAACGAGCCTCTCCCCACTGTCTTGATTCCAACTGCTC
CCATGCAGACCATTCACGGTGGGGTGGACCGGGGCCCCCGAGGACGCTCG
TTTCGACGTCGACCTCCACTACTGCGGGTCCTACTCCTTCTGCTTTGATG
AGGTGAGCGGCGTGCGCCCGGGCACATCGATTTGAGAATATACGCCCGCC
GGCCATGTGTTTTATTATACACAGTTTTATACTGCAGTACAGACCAAAAC
TGACATTCCAGGTCCATCGGAAGCACTTGATTGATTGATTGATTGATTTG
ATTCGATCGATCATCACACTTTACAACCGACAGGCCGCCGATCCCGCTCG
TGGTTGGATGAGAAATCGAGAGCTTGGGAGGCGACATTTCGTTTCGATAT
TTACCGTGTTTTCTGAATATAAAAATATGTTTACAGGAACATAGGCTGGC
TACCCATCAGTGTGAGGTGTGCGTTGGCAGGACGATATGTGGGTTTTGAG
GATACAAAGTGTGGCGGTAGTACCCGAAAGTTTGGACCACAAATCGTATA
GGTTCACACGTACATAAATATTGTACCTCAAGTACCTATTTATGAGTTCC
CTTCTGTACCTTTTTGCGACCACGGTCGGCTATATGCTGTATGTGTGAAC
AACAAAAAATAGAATGAAACAAACACTAAGCGCGTAGTTCCATGATGGGT
GGGATTTCTCGGTTTTTTCGTCTGAAAACTATTAATAGCGGGATCGTTCT
CAAAGCAAGCGTGGTTCTTCAGCTTACGCATTTGATATTCTGTACCTGGT
AGATTATTCCGCGTAGGTTATTTTTTTCGAATTTTCATCTGAACCGTTAG
CGGAATCGGCAACCATCGGCGGGCTGGCGGGGGTGGACGGTCGGTTGGAA
GTGATGAATTCCCAAAATTGAGCCATGGTGAGCCTTTTGTCGACACATGT
GCAACCCGACCGCTTCGTTCCTCAATGCATACAGCCAGTACACGCATAGT
TCTAAATGGTTGCTGGCAGGAAGGGCAACAACTTCCTTTATAACACCACC
TTCCTCAGCAGCAGCCAATCCATGCTTCCATCAGGGGAATGAAAATGCCT
CCCAAGGATGTACCTCCCCATATGCCATAATCATGCTTGCTAAGTACTGT
ACCAGGGACGGTACGGTGTATAGTAGAAGAGAGTTATGATTATAGGTATT
TTTCTCCTTGACTCTATGCGTGTCTGACCACAAGTCGGATCGGATTAAGC
CGATCGGCTATACGTGTGCAAATCAACCAATCAAAATCAAAATCAATGCG
TCGCCTGGATGAACGTATGTACGCCTGTAAGTTACGCTAAAAAACATCCA
CCCCTCTCCACCGACCGCGCTCTCTCAAAAACCACAGGAGGACGGCTGTG
GCTTCTTCATCGCGAGCCTCTGCGACCAAGAAGGCGTTGGGTGCGAGCTA
GACGAGGATGGCGGCCACGAGGTTACGATGCCGGAGCCAATCGCGGGAAT
CTCCGGGGACGGCTACAGGGTCCGAATCTCCCAGGTCGGCATGGACAGGC
AACGCTGTTCGGAGGACTTCTTCTTGATGGCCTCGGCGGACGCGCCCATG
GTGGGCGAGCCCGGGGGGCCGTCGATAGAAGTGGTGGCGCCTAACTCGCT
GTCGATGGCCGTGGCAGGCGAAGAGTACACTGTTGAGGTGAGATACAAAT
TGCGTTGATCGCCTTGGCTGCCTGGCCTGGGGTGTGACAAAAGAGAGTTG
AGTTGGAAGGGGGCACTGTCGAGAAAGCTTGCTCCCACCACCGTGTGTGT
CCCTTGGGGACAAATCCAACCAGAGTAGTGCGGGCTTACACCACGCATAG
GTCTCCCTGCCTCAAGTCAGTTGAGTGCGTGTTTGCCTACCTTATATCAT
ACTTGCATGTGACGTGAAAGTGTTTCGTTGATGAGGTGATAATGTAATAG
CAAGGACTGCAATGGAAGTCTCCGTCTGCATGCTCCGTCGCTCGTTGCAA
CGCTAACGGTCGTTGTGTGATCATGCTGCGCCAGCCGCCGCCCCCCGAAC
AAGCAAACGCAGACCCGAACGTTTTCCTCGTTTATCTAACGGCCCTTGTC
TGCCGCCGCTGTTTGATGTTTTGTGTTAACTCAACAATTGTGTGCTCTTT
CGCTCAGTTCGACTACGACAACGGGTTCGGCTCGAGGGTGGGACGTTTCA
AGATCGACCTTTACGCGGATATGGGCCAGGGCGACTGTGGGGCGTGGGTC
GTGTCTGTCTGCGACAAGCCGAACTCTGGCTGCCACGACACCCGTGAGTT
CGATATATAGCTAAATTGCCCAAATGGGTTGGTGGGAGATGACAAAAAAA
AACTTTGTACTTTTCTGTTCGCACATAAGCCAGTTATTTCCGTGTTTCCC
ACATATGCGCATCGCATTCGTAATTCCCTTGTTTACTTACAGTATCACAT
ATTGATGTGTGTGTGTGTGCCTACATAATAGGGTTAATCGAACCGATACA
CCTCGCGTTGTATGTACGCTTGGAAGCAAGCCGTGCAAGCTTTGTAACAG
CCGGGGTTGCATATCCAGCCGACGCCTGCTAAGCCAGCCCACCGCGTGGA
TAAGACAACCTTATAATATATTCTCGTATGTGTACAGTATATGGTTACCC
CCATGTGTGTTCTCCTTTGCACCTATTCTATGATATCTTCTTAATATATG
TACGTACTCGTATGTTCTTTTCCGATTTCCCCTCCATGGGCACATGACAT
CGCTCCGTATTCCAATATACGGGTGGTACGAACACTTACAAATATAGGAT
ACGCATCTTACTTTCCGACTTCCCCCCCATGGGCAACATATATATCACAT
CGCTCACTCCCGTGTATTCCCGTATACGGGCATCACTGCTGAACGCTGGT
TGATCGAACCCAAATACTAAGGAAAACTACTGTACTACAATAGTAAACTA
CAAATACATCTCTCGCCTGAACAGTAAGAAGTCTAAACCCGTCCCCAGAA
AGAGCCCCACCACGACACTTAAATTTCCCCCACGTTTTTTTATTGCCCGC
CGCCGCCGCCGCCGCAATTGCAGAGGGAGACTACAATGTCGTCATCCCTG
CGACCACCACTGCCGGCGTGTACAGGATCAGGGTGGGTCTCTTCGGCGAC
GACTCTGTCTTCGGATGCTCCCAGCCTTTCGAGGTCGCGCCGGAAGGGGA
GGACCTCTGGCAAGCCTCGCCCTAACTAAGGCCCTGGCAACTTATGCCCT
ACGAGGTCATGCTGTCATTTTCGGCGGGAATGGACTGCTGGTGTTCGCGA
GGTGTATGATGGCCGCGCTGGCGGTACGTAAATATCAGCGGAGAAGCGCT
TGATTGCGCTGGCTGGGCTGGCTGTCCGTCCGCACGCACAGACAAGCAGG
ATAAGCAGAAATTCAATGGGTACATTGATCATTCGTCGCGCGATGGGCGT
GCTGTTTCCTGGGTTCATGAGGGGCGGGGGGGGACTGGCCAGGTTATGTT
TGTGTGGTCTCCTGTCGGATGGATGTGTTTTTTTTATATGAGTGTTTTTT
TTTATAGATGAGGTATAATACTACTGTGATTGTTGTTGGAGGGGGCAAAA
TGACAACCCTTGGGTTCCGCTGCCGCCAGCATAGATGTTTTTTTTATGAG
TGTATCACCCCTGGGTACGTATCCGCTTCCACCTGGATTGTTGCACGTCT
GCATATAGAGAAGGCCACAAGGTGGGCGCGCGGGAGGGGGGGGCAAGCGA
AGGTTTTTCCACCAAACAATAAATGCAAAAAACGCCGCTTGGGCCATCTC
TGTTTTTTTGCGGATATTTTGATAAGTTTTTGTTAAGGTTATAGGTAGAT
CGGTTGATATTTTTTTCTGCTGATCACTTGTGTTCGTTGTCCTTTTTGTG
TGATGTGTGGGTGGGTGTTCTTTTTACATTTTTTATTTGCGCGCGAGAAT
TTCGAATTGTAGTTTTGTTGGGACGATCGATTTTGCACATCCCGCAAAAT
GTCGTGCACGATTAACCAGATTATTAGGTAGGTAGCAGAGGTGTGTATAC
AAGCTTATATTCCATTAAAATGCAATCCATCACCTGGGTCGTGGGGCGTG
CTCGTGAGAGTACTCGTTGTCTGTGGCGCGCCCCGTGTCTTGGGTTTGTT
AAAGTGTGTGTAAGTAAGTATTGCGGCCGATATGGCTGTGTACGAAGCGA
GGCAACCCTTTTGCCCTTGTTTTGTGTCGTTTCCTGCAGCAAAGCCGTGC
CTCGTTTCATGACAGTTTTGTGGTCGCTTTGCGCCCATGACCGTCCCACA
CGTGTATGTGCGGTGGGGATCGATTTCTTGGAGGAACTAAGAGAAAAATA
ATATCATTTTCACTTGCGTGTGGGTCTGTCTCACTTTGCGTCGTGGGTGG
AGCCGGACTTCCTTGTGACCGACGATGAATGGGCTCGAACTCACCACACA
CTTTTTTATCCTCCGACCTGTACTACGAACGTGCTTCTAGGCCAGATGAG
AAATCGAGAAATTTCATATTGAATGGTTTAGACAAAATCATATACTTGCA
GCACCCTTGCTACAGTACGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig8952:2944..8663-

>mRNA_S-dermatodea_contig8952.17035.1 ID=mRNA_S-dermatodea_contig8952.17035.1|Name=mRNA_S-dermatodea_contig8952.17035.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at S-dermatodea_contig8952:2944..8663- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCTCTGGGGTGGCTATGGCGGCGGCTGTTGCGGGGATGCTCAGCGC
TGCGACCTTGACCGAGGCGCTGACGGTGGTGGCTCCGTCCGAGGGCATGA
CGGTCGTGGCTGAGAGATGATCTCTGGGGTGGCTATGGCGGCGGCTGTTG
CGGGGATGCTCAGCGCTGCGACCTTGACCGAGGCGCTGACGGTGGTGGCT
CCGTCCGAGGGCATGACGGTCGTGGCTGAGAGACCATTCACGGTGGGGTG
GACCGGGGCCCCCGAGGACGCTCGTTTCGACGTCGACCTCCACTACTGCG
GGTCCTACTCCTTCTGCTTTGATGAGACCATTCACGGTGGGGTGGACCGG
GGCCCCCGAGGACGCTCGTTTCGACGTCGACCTCCACTACTGCGGGTCCT
ACTCCTTCTGCTTTGATGAGGAGGACGGCTGTGGCTTCTTCATCGCGAGC
CTCTGCGACCAAGAAGGCGTTGGGTGCGAGCTAGACGAGGATGGCGGCCA
CGAGGTTACGATGCCGGAGCCAATCGCGGGAATCTCCGGGGACGGCTACA
GGGTCCGAATCTCCCAGGTCGGCATGGACAGGCAACGCTGTTCGGAGGAC
TTCTTCTTGATGGCCTCGGCGGACGCGCCCATGGTGGGCGAGCCCGGGGG
GCCGTCGATAGAAGTGGTGGCGCCTAACTCGCTGTCGATGGCCGTGGCAG
GCGAAGAGTACACTGTTGAGGAGGACGGCTGTGGCTTCTTCATCGCGAGC
CTCTGCGACCAAGAAGGCGTTGGGTGCGAGCTAGACGAGGATGGCGGCCA
CGAGGTTACGATGCCGGAGCCAATCGCGGGAATCTCCGGGGACGGCTACA
GGGTCCGAATCTCCCAGGTCGGCATGGACAGGCAACGCTGTTCGGAGGAC
TTCTTCTTGATGGCCTCGGCGGACGCGCCCATGGTGGGCGAGCCCGGGGG
GCCGTCGATAGAAGTGGTGGCGCCTAACTCGCTGTCGATGGCCGTGGCAG
GCGAAGAGTACACTGTTGAGTTCGACTACGACAACGGGTTCGGCTCGAGG
GTGGGACGTTTCAAGATCGACCTTTACGCGGATATGGGCCAGGGCGACTG
TGGGGCGTGGGTCGTGTCTGTCTGCGACAAGCCGAACTCTGGCTGCCACG
ACACCCTTCGACTACGACAACGGGTTCGGCTCGAGGGTGGGACGTTTCAA
GATCGACCTTTACGCGGATATGGGCCAGGGCGACTGTGGGGCGTGGGTCG
TGTCTGTCTGCGACAAGCCGAACTCTGGCTGCCACGACACCCAGGGAGAC
TACAATGTCGTCATCCCTGCGACCACCACTGCCGGCGTGTACAGGATCAG
GGTGGGTCTCTTCGGCGACGACTCTGTCTTCGGATGCTCCCAGCCTTTCG
AGGTCGCGCCGGAAGGGGAGGACCTCTGGCAAGCCTCGCCCTAAAGGGAG
ACTACAATGTCGTCATCCCTGCGACCACCACTGCCGGCGTGTACAGGATC
AGGGTGGGTCTCTTCGGCGACGACTCTGTCTTCGGATGCTCCCAGCCTTT
CGAGGTCGCGCCGGAAGGGGAGGACCTCTGGCAAGCCTCGCCCTAA
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