mRNA_S-dermatodea_contig8950.17034.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8950.17034.1 vs. uniprot
Match: D7FP64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP64_ECTSI) HSP 1 Score: 407 bits (1046), Expect = 2.580e-132 Identity = 218/332 (65.66%), Postives = 260/332 (78.31%), Query Frame = 2
Query: 344 VTADLALDTIISDLRARIAQSPAHLEDSDESQRHAERHVSTRFEVDGLGNLVGGPEEEARLAQRLALDTFVVVRVTCADVRASMVRLREAAEHLLGDARTVEQKLDAFGAMQDHGEGVVSGYAGGGDYGADQFLETRGRGGLGIAPDVEAEALPGVIEGRRALSALSCGVLRAVARQTLPEVDQTAFLHLVDDGEG--GPEAGNQDLSASPLRVCRYAGA-DGVAFGSHTDTTFLTVIPCTPAPGLEILQPSTGRWLRPEAAGSCRPGDDVMLLAGELLQVFGQGRYRAAVHRVVRPAGLTAPRVSTPLLLRGALGASIKDSMLPAAVVANL 1330
VT + AL+ II +LRARI ++P LE + ESQRHA+R +ST FEVD GNL+GG +E RL + L+LDTFVVVRV RA + RL AE LLG++RTVE+K+ AFG ++ G+ VSGYAGGGDYG+ QFLETRG GG I P V+ +A G+IEGRRAL+A+S G+L+AV RQ+LPE+D AFL LVD GEG G + ++SASPLR+CRYAG DGVAFG+HTDTTFLTVIPC APGLEI+QPSTGRW+RPEA+ CRPG DVMLLAGELLQVFG+GRY+AAVHRVVRPAG T PRVSTPLLLRG GA+I+ SMLP AV A L
Sbjct: 82 VTPEAALNPIIQELRARIVEAPEPLEGNRESQRHADRVISTTFEVDCDGNLLGGEGQELRLTRALSLDTFVVVRVRPKPARACLRRLGRVAEQLLGESRTVEEKVAAFGPIRAEGQ-FVSGYAGGGDYGSGQFLETRGIGGDEIVPHVDGDAAAGLIEGRRALTAISGGILQAVLRQSLPEIDPAAFLGLVDPGEGRQGVGGSSPNMSASPLRICRYAGGGDGVAFGTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRYQAAVHRVVRPAGSTEPRVSTPLLLRGIAGAAIRGSMLPPAVAARL 412
BLAST of mRNA_S-dermatodea_contig8950.17034.1 vs. uniprot
Match: A0A6H5KEM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM1_9PHAE) HSP 1 Score: 333 bits (853), Expect = 3.120e-105 Identity = 177/261 (67.82%), Postives = 206/261 (78.93%), Query Frame = 2
Query: 557 VVRVTCADVRASMVRLREAAEHLLGDARTVEQKLDAFGAMQDHGEGVVSGYAGGGDYGADQFLETRGRGGLGIAPDVEAEALPGVIEGRRALSALSCGVLRAVARQTLPEVDQTAFLHLVDDGEGGPEAGNQD--LSASPLRVCRYAGA-DGVAFGSHTDTTFLTVIPCTPAPGLEILQPSTGRWLRPEAAGSCRPGDDVMLLAGELLQVFGQGRYRAAVHRVVRPAGLTAPRVSTPLLLRGALGASIKDSMLPAAVVANL 1330
VVRV RA + RL AE LLG++RTVE+K+ AFG ++ G+ VSGYAGGGDYG+ QFLETRG GG I P V+ +A+ G+IEGRRAL+A+S G+L+AV RQ+LPE+D +FL LVD GEG G +SASPLRVCRYAG DGVAFG+HTDTTFLTVIPC APGLEI+QPSTGRW+RPEA+ CRPG DVMLLAGELLQVFG+GRY+AAVHRVVRPAG T PRVSTPLLLRG GA+I+ SMLP AV A L
Sbjct: 4 VVRVRPKPARACLRRLGRVAEQLLGESRTVEEKVAAFGPIRAEGQ-FVSGYAGGGDYGSGQFLETRGIGGDEIVPHVDDDAVAGLIEGRRALTAISGGILQAVLRQSLPEIDPASFLGLVDPGEGRQGVGGSSPKMSASPLRVCRYAGGGDGVAFGTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRYQAAVHRVVRPAGSTEPRVSTPLLLRGVAGAAIRGSMLPPAVAARL 263
BLAST of mRNA_S-dermatodea_contig8950.17034.1 vs. uniprot
Match: A0A7S4D4K1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4K1_HETAK) HSP 1 Score: 107 bits (266), Expect = 7.140e-24 Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = 2
Query: 1004 VAFGSHTDTTFLTVIPCTPAPGLEILQPSTGRWLRPEAAGSCRPGDDVMLLAGELLQVFGQGRYRAAVHRVVRPAGLTAPRVSTPLLLR 1270
V FG+HTDTTF+T+IPC+ PGLE+ P+ W+RPE A CRPG D+++L GELLQV G Y AAVHRVV G TA RVS PLL+R
Sbjct: 6 VTFGAHTDTTFVTLIPCSNIPGLEVFSPALDGWVRPEPA--CRPGRDIIILPGELLQVLSAGHYPAAVHRVVSVGGGTA-RVSAPLLVR 91
BLAST of mRNA_S-dermatodea_contig8950.17034.1 vs. uniprot
Match: A0A7S3NIL1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIL1_9STRA) HSP 1 Score: 105 bits (261), Expect = 1.500e-21 Identity = 62/150 (41.33%), Postives = 83/150 (55.33%), Query Frame = 2
Query: 854 LRAVARQTLPEVDQTAFLHLVDDGEGGPEAGNQDLSASPLRVCRYAGA-DGVAFGSHTDTTFLTVIPCTPAPGLEILQPSTGRWLRPEAAGSCRPGDDVMLLAGELLQVFGQGRYRAAVHRVVRPAG----LTAPRVSTPLLLRGALGAS 1288
L ++ + L +D + L D E ++S + R+CRY + VAFGSHTDTTFLT++PC PGLE+ PS G +L EA+ PG DV+ LAGE L + G+Y +AVHRV+ + R STPLLLR AS
Sbjct: 147 LGSLGLRILSSLDDPTYARLCDIPL---ERKRNEVSTTVFRLCRYESIKEDVAFGSHTDTTFLTLVPCASQPGLEVFDPSIGAFLCHEASPLACPGRDVICLAGEFLDLLSNGKYGSAVHRVILTSADAKQRRTTRSSTPLLLRAKRSAS 293
BLAST of mRNA_S-dermatodea_contig8950.17034.1 vs. uniprot
Match: L1JA75_GUITC (2OG-FeII_Oxy domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JA75_GUITC) HSP 1 Score: 101 bits (251), Expect = 1.220e-19 Identity = 83/263 (31.56%), Postives = 130/263 (49.43%), Query Frame = 2
Query: 500 GGPEEEARLAQRLALDTFVVVRVTCADVRASMVRLREAAEHLLGDARTVEQKLDAFGAMQDHGEGV-VSGYAGGGDYGADQFLETRGRGGLGIAPDVEAEALPGVIEGRRALSALSCGVLRAV--ARQTLPEVDQTAFLHLVDDGEGGPEAGNQDLSASPLRVCRYAGADGVAFGSHTDTTFLTVIPCTPAPGLEILQPSTGRWLRPEAAGSCRPGDDVMLLAGELLQVFGQGRYRAAVHRVVRPA----GLTAP-RVSTPLL 1264
G RL L D + ++++ + +S+ ++ E A+ G + ++K A G M V V G+ D ++FLE R I P + +P R L +AV A + + + +L+DDG + LS++ R C Y + VAF +HTDTTF+TVIPC+ PGLE+L P G W++PE++ V+++ GE+LQV G+++AA+HRV R + G +A RVS PLL
Sbjct: 114 GAGPHSRRLCDILVRDHYAIIKLPRSS-SSSLDQMWETADKFFGMDQ--KEKALAGGKMSKAANNVGVIGWGQMSD--GNEFLEMRLTANGQIFPPSLDDFIPDFTSSTRRARELLMRASKAVVVAAERKVGLRRGGLSNLLDDGRMHADG---SLSSTQHRFCFYKSSSQVAFEAHTDTTFVTVIPCSKIPGLEVLSPEEG-WIQPESSSGVDQTCSVIVMPGEMLQVLTGGQFQAAIHRVTRSSSSEGGSSAQDRVSAPLL 367
BLAST of mRNA_S-dermatodea_contig8950.17034.1 vs. uniprot
Match: A0A7S2G6D7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G6D7_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 2.150e-19 Identity = 67/158 (42.41%), Postives = 91/158 (57.59%), Query Frame = 2
Query: 815 EGRRALSALSCGVLRAVARQTLPEVDQTAFLHLVDDGEGGPEAGNQDLSASPLRVCRYAGADG--VAFGSHTDTTFLTVIPCTPA---PGLEILQPSTGRWLRPEAAGSCRPGDDVMLLAGELLQVFGQGRYRAAVHRVVRPAGLTAPRVSTPLLLRG 1273
+G L +S ++A A E + +FL L+D G+ E LS + R CRY G++G +AFGSHTD+TF TVIP + PG+++ S G+WL PE +C DV+++ GE LQV G Y AAVHRV RP RVSTP+L+RG
Sbjct: 28 DGWETLVGISATAVKASALSLDREPE--SFLGLMDRGD---EVELSSLSHTVQRFCRY-GSEGKRIAFGSHTDSTFFTVIPVASSVLQPGVQVF--SQGQWLCPET--NCDAETDVLIMTGEFLQVLSNGVYPAAVHRVNRPRH--GSRVSTPMLVRG 173
BLAST of mRNA_S-dermatodea_contig8950.17034.1 vs. uniprot
Match: A0A836CHQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ9_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.870e-15 Identity = 96/315 (30.48%), Postives = 138/315 (43.81%), Query Frame = 2
Query: 512 EEARLAQRLALDTFVVVRVTCADVRASMVRLREAAEHLLGDARTVEQKLDAFGAMQDHGEGVVSGYAGGGDYGADQFLETRGRGGLGIAPDVEA----EALPGVIEGRRALSALSCGVLRAVARQ---------TLPEVDQTAFLHLVDDGEGG-PEAGN-----------QDLSASPLRVCRYAGAD------------------------------GVAFGSHTDTTFLTVIPCTPAPGLEILQPSTGRWLRPEAAGSCRPGDDVMLLAGELLQVFGQGRYRAAVHRVVRPAGLTAPRVSTPLLLRGALGASI 1291
++ R+ LA + + VVR+ A+ M R + GD + K G M D+ G V GYA ++FLETR + P V A EA +I R ALS ++ V+ A AR L + D + + G G PEA N +S + R+CRY+ + V FG+HTDTT +T++PC+ PG+++ G W+ PE + G DV +L+GELLQ G++ AAVHRVV A R+S PLL+R GAS+
Sbjct: 54 KQHRMDLSLATNHYAVVRLPEAEPLEDMWRQLQRFFVESGDE---DAKTRLAGEM-DNINGQVLGYA---KLDENEFLETRLDRSGRLRPPVSALDGFEAA--LIRARLALSRVAAAVVAAAARDCGIAPTELCALMDGDDSYVETVPGSGPGNDPEARNGVAAAAERAAATRMSETVHRLCRYSPPEPEHTAAESAXXXXXXXXXXXXXXXXXXXSVSVTFGAHTDTTMVTLVPCS-VPGIQV-HTRGGGWVGPEGSPCIARGRDVAVLSGELLQALSAGKFPAAVHRVVAGA---QGRLSAPLLVRERAGASV 354
BLAST of mRNA_S-dermatodea_contig8950.17034.1 vs. uniprot
Match: A0A6H5JN53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN53_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 9.560e-15 Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 2
Query: 329 RPAATVTADLALDTIISDLRARIAQSPAHLEDSDESQRHAERHVSTRFEVDGLGNLVGGPEEEARLAQRLALDTFV 556
R VT + ALD II +LRARI ++P LE + ESQRHA+R +ST FEVD GNL+GG +E RLA+ LAL+TFV
Sbjct: 78 RTTPAVTPEAALDPIIQELRARIVEAPEPLEGNRESQRHADRVISTTFEVDCDGNLLGGEGQELRLARALALETFV 153
BLAST of mRNA_S-dermatodea_contig8950.17034.1 vs. uniprot
Match: L1JPF2_GUITC (2OG-FeII_Oxy domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JPF2_GUITC) HSP 1 Score: 82.0 bits (201), Expect = 2.200e-13 Identity = 67/196 (34.18%), Postives = 96/196 (48.98%), Query Frame = 2
Query: 725 YGADQFLETRGRGGLGIAPDVEAEALPGVIEGRRALSAL--SCGVLRAVARQTLPEVDQTAFLHL----------VDDGEGGPEAGNQDLSASPLRVCRYAGADGVAFGSHTDTTFLTVIPCTPAPGLEILQPSTGRWLRPEAAGSCRPGDDVMLLAGELLQVFGQGRYRAAVHRVVRPAGLTAP-RVSTPLLLRG 1273
+ ++FL R G I P + + +RA S + +C +L + + L E+ F HL +D G PE G LS S R C Y +F H D TFLT+IP + PGLE+L S RW RPE+ D+++L+G+ LQ+F G + A++HRVV + + R S PLLLRG
Sbjct: 179 FSGNEFLSVRAAGQGNIVPSLR-------LVSQRADSHVFEACDMLSRIGLEVLREL----FWHLGLSKEEIRDWIDTGNH-PEGGA--LSMSEQRFCFYNSKSPCSFEPHVDLTFLTIIPASSQPGLEVLD-SCLRWQRPESDLRLTE-KDMLVLSGQTLQLFSGGAFPASIHRVVCESSSSPNGRYSCPLLLRG 358
BLAST of mRNA_S-dermatodea_contig8950.17034.1 vs. uniprot
Match: K3Y352_SETIT (Fe2OG dioxygenase domain-containing protein n=3 Tax=Setaria TaxID=4554 RepID=K3Y352_SETIT) HSP 1 Score: 60.1 bits (144), Expect = 2.780e-6 Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 2
Query: 989 AGADGVAFGSHTDTTFLTVIPCTPAPGLEILQPSTGRWL-----RPEAAGSCRPGDDVMLLAGELLQVFGQGRYRAAVHRVVRPAGLT-APRVSTPLLLRGALGASIK 1294
+G+D + G HTD TF++VI T GLE L TG WL R GS + + G+ L+ GRYRAAVHRV+ G T RVS L A+ S++
Sbjct: 180 SGSDDLRCGDHTDYTFISVILSTHE-GLEELDRGTGAWLAAPHRRGAEGGSXXXXXSLTVHVGDCLEAMSNGRYRAAVHRVLWGRGDTDTSRVSITSLTNWAMDESVE 286 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8950.17034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8950.17034.1 >prot_S-dermatodea_contig8950.17034.1 ID=prot_S-dermatodea_contig8950.17034.1|Name=mRNA_S-dermatodea_contig8950.17034.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=397bp MTTRPLTHSKHRRRTRAMLATSAAAVLVVLAPAHAFLTQVPRCPGATPFEback to top mRNA from alignment at S-dermatodea_contig8950:6877..8769+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8950.17034.1 ID=mRNA_S-dermatodea_contig8950.17034.1|Name=mRNA_S-dermatodea_contig8950.17034.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1893bp|location=Sequence derived from alignment at S-dermatodea_contig8950:6877..8769+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8950:6877..8769+ >mRNA_S-dermatodea_contig8950.17034.1 ID=mRNA_S-dermatodea_contig8950.17034.1|Name=mRNA_S-dermatodea_contig8950.17034.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2382bp|location=Sequence derived from alignment at S-dermatodea_contig8950:6877..8769+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |