mRNA_S-dermatodea_contig8949.17033.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8949.17033.1
Unique NamemRNA_S-dermatodea_contig8949.17033.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8949.17033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8949contigS-dermatodea_contig8949:2889..6743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size1018
Cds size903
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8949.17033.1prot_S-dermatodea_contig8949.17033.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8949 2889..6630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925374.2718205-CDS-S-dermatodea_contig8949:2888..31911622925374.2718205-CDS-S-dermatodea_contig8949:2888..3191Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8949 2889..3191 -
1694079890.0534906-CDS-S-dermatodea_contig8949:2888..31911694079890.0534906-CDS-S-dermatodea_contig8949:2888..3191Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8949 2889..3191 -
1622925374.2841206-CDS-S-dermatodea_contig8949:3786..39241622925374.2841206-CDS-S-dermatodea_contig8949:3786..3924Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8949 3787..3924 -
1694079890.0669236-CDS-S-dermatodea_contig8949:3786..39241694079890.0669236-CDS-S-dermatodea_contig8949:3786..3924Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8949 3787..3924 -
1622925374.2989657-CDS-S-dermatodea_contig8949:4694..47871622925374.2989657-CDS-S-dermatodea_contig8949:4694..4787Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8949 4695..4787 -
1694079890.0760286-CDS-S-dermatodea_contig8949:4694..47871694079890.0760286-CDS-S-dermatodea_contig8949:4694..4787Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8949 4695..4787 -
1622925374.311122-CDS-S-dermatodea_contig8949:5849..59931622925374.311122-CDS-S-dermatodea_contig8949:5849..5993Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8949 5850..5993 -
1694079890.084923-CDS-S-dermatodea_contig8949:5849..59931694079890.084923-CDS-S-dermatodea_contig8949:5849..5993Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8949 5850..5993 -
1622925374.3243873-CDS-S-dermatodea_contig8949:6405..66301622925374.3243873-CDS-S-dermatodea_contig8949:6405..6630Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8949 6406..6630 -
1694079890.0938892-CDS-S-dermatodea_contig8949:6405..66301694079890.0938892-CDS-S-dermatodea_contig8949:6405..6630Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8949 6406..6630 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925374.3390229-UTR-S-dermatodea_contig8949:6630..67431622925374.3390229-UTR-S-dermatodea_contig8949:6630..6743Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8949 6631..6743 -
1694079890.1050909-UTR-S-dermatodea_contig8949:6630..67431694079890.1050909-UTR-S-dermatodea_contig8949:6630..6743Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8949 6631..6743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8949.17033.1

>prot_S-dermatodea_contig8949.17033.1 ID=prot_S-dermatodea_contig8949.17033.1|Name=mRNA_S-dermatodea_contig8949.17033.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=301bp
MKIFFVGLLVSCGGFFSSWGACHTATPNAAAEAAADEMIDNGLVQVSSCD
DFAGKFVHLAFDINVTGPIICNPSKIINIPDGYSVVISARDNMTFFGVHF
LVEPDAQLSLVAGGDVTLQRNNMTLADMRAVFIRGKLAIFSGGATPGETM
LEESLVKPDSIQHGLLILHGDGRVYAGQEVTFTTDAVIVTAGSSDTKHPQ
PFKQKNESGPVDNKHTDTIDAKMKTDTLKEGQVLRGESLTSSDGTSRVWA
GRHGSVLFGTVLEDAQQGGQKSTLIPADHTSVKAVLKIRSLLAKETTDGG
G
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mRNA from alignment at S-dermatodea_contig8949:2889..6743-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8949.17033.1 ID=mRNA_S-dermatodea_contig8949.17033.1|Name=mRNA_S-dermatodea_contig8949.17033.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3855bp|location=Sequence derived from alignment at S-dermatodea_contig8949:2889..6743- (Saccorhiza dermatodea SderLu1190fm monoicous)
CACTTCTCTCTGGCTCCAAAGGCACAGGCTCAGGGCAAGACGCGAGTTGC
GCCAAGCAGCATCTTCCACAATAGCCAGCATCAACCAGGCGGGCTCACAC
TGGTGGCACGCACATGAAGATCTTCTTTGTCGGCCTGCTGGTTTCCTGCG
GCGGGTTCTTCTCGTCGTGGGGTGCCTGCCACACGGCGACTCCCAACGCG
GCTGCTGAGGCTGCTGCGGACGAGATGATAGACAACGGATTGGTGCAGGT
GTCCAGCTGCGACGATTTCGCAGGCAAATTTGTGCACCTCGCCTTCGACA
TCAACGTTACCGGCCCAATAATCTGCAACCCCAGCAAGGTGACCGGGTAG
TTCGCGTGCACTGGCCCTTGCGCACATCTAACCGACAAGTTGTTATACAG
GTTTCCCGCCCTACCGATTTGTGTGTAATTTACAGCAGTAATTGACCAAC
CGTTAGTTGTTGTTTCAACCCCTCTCCCTCCCGTCTCCCTAAGCATCACA
GCATGCATGGCATTTGTTTGTGGTGGCAATCCGACCCCCTCCCTCTCGTA
GGCTTCATCTGCGCCCTTGTCTCATTTCATTAGCATTGGACTCGGATCCG
GCCCCGGGGTGAAGCTGGGACCACCATGCATCTTCCTCTGGCAACGGGTG
GGGTGGTCCGTGCTAACCATCCACCCTTGATCCACCGGTAAATAAAAGCG
GTTGATTTCAAGGCTCAACTCTGTTCCCCGCCCAACCGCCTTGCTCTCAG
ATCATCAACATCCCCGACGGCTACAGCGTCGTGATCAGTGCCAGGGACAA
CATGACTTTTTTCGGGGTGCACTTTCTGGTAGAGCCTGATGCACAGCTGA
GCCTCGTGGCAGGGGGAGACGTGACTCTACAGAGGAACAACATGGCAAGT
CTGAGTGAATGAGTTATAATGATGGTGGATTTGCAAGGGGCGCTACGATA
TGTTTGCGAAGATACACGTGAGCGAGGGTGCTGTGTCTGTAATGTGGAGC
TGCTGGGCGCTGCGCCACACACACTGGTTTGTGCTCCGGATTTTGCTTCC
GTTGCCGCGGCGTGGTCCTCGTATATCTATACAGCAGTAGTACAAGTTTA
TATATCGATACTTTTCCCATCATGATCGGTGAGGGTGGTGGCAGGTGGTT
CATCGTACCGTCGCGGTATTAATGTTTTCTTTTTCAGCTGCTGTATGTAT
AAAATATAGCATCACTATATACGGCGCTGCGTGCATACACTACTCCAGTA
TGCTATTAGACTTGTAACAGTAAGTATTTTGGTGCATATACTACTCCAGT
ACTAACAGTATTTTGGTGAGATGAAGAACGGCCCGAAATGCTGCTCTCTG
AACCACCTCGCCGACGACACACAGGTAGGTCTAGATAAGTCCATTCAACT
ACATACAATTGGATCTATATATACACAGCCGCCCCAAGGCGGTTGTATCG
GTGGCGACGACGCCCCGGCTGGTGGGGTGTTGGGGTTTCTCGATATCTAT
GTGAGACGATTCGTCTTCTCGTGTCACCTTCTGTCGGGGAGGATACCATA
TATCCCCAGTGCTGCGCCTTCAATTTATGGTGTTTACGTAGTTCAGCACT
CTTTCTTGCAGCTCTCACTGACTTTTCGTATTTTGCGTATTCGCGTTCTC
ACGTATTTCCGCGATCAAATTGTGGCAACGTTGGCGTTCCGGAAATGTAC
ATAACGGTATCATACCCTGCAAAACGATTCCGCGCTCTTCGTCCGTTCAA
AAATAATTACGCGATAGTGTATAGTACGCAGCAAGCAGCAAGAGCCTCAC
TTACACATTGGCACCGTGTTGCACGCTTTCGTACATTTTCGTGCGTTTTT
GTGTATTGGCGTAGAGCTGGAGGTCTCACTGCGCCTCCCGTACTTTCGAT
GCGGTCTCCAACCTGAGGTAATTTCTCGCGTAACCCTCCCCTGTCCCTGC
TTTCAGACCTTGGCGGACATGCGCGCTGTCTTCATCCGCGGCAAGCTCGC
TATTTTCTCTGGAGGAGCAACCCCGGGTGAAACAATGCTTGAGGAATCGG
TGAGTTGGAGGACCTTGGTGTATACGCCATGTTTGGCGTGGTTGATGTTG
TCAAATCGGTGTCATGCCATGAATGTACGTAAAATTGAGGACATGCACCG
CAGGTTTTGGGGGTCATTTTGCCACAAGTGTATAACGCCCGTTCCTGCAA
TTTGTGAAACGATCCGATAAACACAAGTGTTTAATTGTACACGCAGCGAC
CACGGAATCGGTCGTGCATGGCTTGTGTCACCAGCGTAGTTCCCGATAGC
CTTCGTTGTGTTTTCGTCAAAACACGAGAAAAAAACGTGCGACCTCGAAG
TCGGTTTCGATAATCTCAAGCACGCAGATTCACGGGTTCCCTAAGTAATC
TTTGCGTACTGAAAAGCGTCTGTGGCACAAACTTTCCCCTCCCTTAGCAA
GTGTCACGGCTGTTTTAATCATTTCTTGAGTTCAGCACTTCGGTGCAGCG
TCATTCATCGCCAGATGATGTGTCGGAGAACTAGAATCAGTGTTAGGTCG
ATCACGACCGATCGCCGTGACCACGTGGCGAAGCAACATCTTCTTGCAGA
GAACCCGAGGCACGAGTTCCATCCCATACCTCAGCTCATTTTGATTTATG
TTCTTTTTTACTCAAAACGAAAAAAACAATCAAGCCACACGAGTCCACCC
TGCATGATCAATTACGCTCGGGATTGAACGCATAAGAAAAAAAGAAAAAA
GATCCTGACCCCCGACGTGCAACTGTCCTTATGCTATCCGCGCTGGTGCC
CCGTGCCGCTTGTTATTAGCTCGTGAAGCCAGACTCCATCCAGCATGGGC
TGTTGATCCTGCACGGGGACGGCAGGGTTTACGCAGGGCAAGAGGTGACG
TTCACGACCGATGCAGTCATCGTTACTGCGGGAAGCTCTGATACCAAACA
CCCGCAGGTGCGCATTTATGTGTGGGCGGCCCATCCTTATGGCGGTGTTT
TTAAGACGTGTCGGTTAAGAAACGCCATGCGGAGGTTAAACACGGTAACC
GATTCCACCACGAGATCCAGGTACGGTCACGCGCTTGCCATACGTGCCAA
GTGAATGGAACTTGAGTCTGTGTACATGAACATTTGACGATATTTCGGAC
GATCGAACTACACTATTATACTACTATTACCACAATTGGGAAGGCTTTAG
ACGGGGGAGGGGGGGATACCTCCTGACGTCTCACCGTACTCCGGATGCAC
GATTACAGGGTATTTGTGGCTGCTGGTGCGCATCAAGCTCATGCCTCCAT
CCACTATTGCACGTACAGGTGGTGGAGGCCGCCATACGACGTTGCCCACA
AATCTTGGGAATTGTGCAAGTGTGCAAGGGTTTCACCTGAAACAATTGCT
GTGGCGGCAGTACATGTCAACATGCAAAATTGTCAACATGCGAGCGCTGA
GAGCCTTCTTGCTCGCCGGTTCATTTCGGTAGCATTTTCCGATGCCGGCA
AGCCCTCTCGTTGTTCGCTTCCCCCTCCCTACCGTGCACCCTCTACTTGT
AGCCTTTCAAGCAGAAAAACGAGAGCGGGCCGGTTGACAACAAACACACT
GATACCATCGACGCTAAGATGAAGACGGACACGCTAAAGGAGGGTCAAGT
TCTCCGCGGAGAATCACTCACGTCGAGTGATGGCACCTCCCGGGTGTGGG
CTGGCAGGCACGGATCTGTTCTGTTCGGTACAGTCTTGGAAGACGCTCAG
CAGGGCGGGCAGAAGTCAACGCTGATTCCTGCTGATCACACAAGTGTCAA
GGCCGTCCTGAAAATCCGCTCGCTGCTGGCGAAAGAGACGACCGACGGGG
GGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8949:2889..6743-

>mRNA_S-dermatodea_contig8949.17033.1 ID=mRNA_S-dermatodea_contig8949.17033.1|Name=mRNA_S-dermatodea_contig8949.17033.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at S-dermatodea_contig8949:2889..6743- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGATCTTCTTTGTCGGCCTGCTGGTTTCCTGCGGCGGGTTCTTCTC
GTCGTGGGGTGCCTGCCACACGGCGACTCCCAACGCGGCTGCTGAGGCTG
CTGCGGACGAGATGATAGACAACGGATTGGTGCAGGTGTCCAGCTGCGAC
GATTTCGCAGGCAAATTTGTGCACCTCGCCTTCGACATCAACGTTACCGG
CCCAATAATCTGCAACCCCAGCAAGATGAAGATCTTCTTTGTCGGCCTGC
TGGTTTCCTGCGGCGGGTTCTTCTCGTCGTGGGGTGCCTGCCACACGGCG
ACTCCCAACGCGGCTGCTGAGGCTGCTGCGGACGAGATGATAGACAACGG
ATTGGTGCAGGTGTCCAGCTGCGACGATTTCGCAGGCAAATTTGTGCACC
TCGCCTTCGACATCAACGTTACCGGCCCAATAATCTGCAACCCCAGCAAG
ATCATCAACATCCCCGACGGCTACAGCGTCGTGATCAGTGCCAGGGACAA
CATGACTTTTTTCGGGGTGCACTTTCTGGTAGAGCCTGATGCACAGCTGA
GCCTCGTGGCAGGGGGAGACGTGACTCTACAGAGGAACAACATGATCATC
AACATCCCCGACGGCTACAGCGTCGTGATCAGTGCCAGGGACAACATGAC
TTTTTTCGGGGTGCACTTTCTGGTAGAGCCTGATGCACAGCTGAGCCTCG
TGGCAGGGGGAGACGTGACTCTACAGAGGAACAACATGACCTTGGCGGAC
ATGCGCGCTGTCTTCATCCGCGGCAAGCTCGCTATTTTCTCTGGAGGAGC
AACCCCGGGTGAAACAATGCTTGAGGAATCGACCTTGGCGGACATGCGCG
CTGTCTTCATCCGCGGCAAGCTCGCTATTTTCTCTGGAGGAGCAACCCCG
GGTGAAACAATGCTTGAGGAATCGCTCGTGAAGCCAGACTCCATCCAGCA
TGGGCTGTTGATCCTGCACGGGGACGGCAGGGTTTACGCAGGGCAAGAGG
TGACGTTCACGACCGATGCAGTCATCGTTACTGCGGGAAGCTCTGATACC
AAACACCCGCAGCTCGTGAAGCCAGACTCCATCCAGCATGGGCTGTTGAT
CCTGCACGGGGACGGCAGGGTTTACGCAGGGCAAGAGGTGACGTTCACGA
CCGATGCAGTCATCGTTACTGCGGGAAGCTCTGATACCAAACACCCGCAG
CCTTTCAAGCAGAAAAACGAGAGCGGGCCGGTTGACAACAAACACACTGA
TACCATCGACGCTAAGATGAAGACGGACACGCTAAAGGAGGGTCAAGTTC
TCCGCGGAGAATCACTCACGTCGAGTGATGGCACCTCCCGGGTGTGGGCT
GGCAGGCACGGATCTGTTCTGTTCGGTACAGTCTTGGAAGACGCTCAGCA
GGGCGGGCAGAAGTCAACGCTGATTCCTGCTGATCACACAAGTGTCAAGG
CCGTCCTGAAAATCCGCTCGCTGCTGGCGAAAGAGACGACCGACGGGGGG
GGGCCTTTCAAGCAGAAAAACGAGAGCGGGCCGGTTGACAACAAACACAC
TGATACCATCGACGCTAAGATGAAGACGGACACGCTAAAGGAGGGTCAAG
TTCTCCGCGGAGAATCACTCACGTCGAGTGATGGCACCTCCCGGGTGTGG
GCTGGCAGGCACGGATCTGTTCTGTTCGGTACAGTCTTGGAAGACGCTCA
GCAGGGCGGGCAGAAGTCAACGCTGATTCCTGCTGATCACACAAGTGTCA
AGGCCGTCCTGAAAATCCGCTCGCTGCTGGCGAAAGAGACGACCGACGGG
GGGGGG
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