mRNA_S-dermatodea_contig8949.17032.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8949.17032.1
Unique NamemRNA_S-dermatodea_contig8949.17032.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8949.17032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8949contigS-dermatodea_contig8949:1101..2655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1291
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8949.17032.1prot_S-dermatodea_contig8949.17032.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8949 2065..2640 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925374.2053025-UTR-S-dermatodea_contig8949:1100..20641622925374.2053025-UTR-S-dermatodea_contig8949:1100..2064Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8949 1101..2064 -
1694079890.005803-UTR-S-dermatodea_contig8949:1100..20641694079890.005803-UTR-S-dermatodea_contig8949:1100..2064Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8949 1101..2064 -
1622925374.2407105-UTR-S-dermatodea_contig8949:2640..26551622925374.2407105-UTR-S-dermatodea_contig8949:2640..2655Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8949 2641..2655 -
1694079890.0414016-UTR-S-dermatodea_contig8949:2640..26551694079890.0414016-UTR-S-dermatodea_contig8949:2640..2655Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8949 2641..2655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925374.21846-CDS-S-dermatodea_contig8949:2064..23131622925374.21846-CDS-S-dermatodea_contig8949:2064..2313Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8949 2065..2313 -
1694079890.0196939-CDS-S-dermatodea_contig8949:2064..23131694079890.0196939-CDS-S-dermatodea_contig8949:2064..2313Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8949 2065..2313 -
1622925374.2292347-CDS-S-dermatodea_contig8949:2577..26401622925374.2292347-CDS-S-dermatodea_contig8949:2577..2640Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8949 2578..2640 -
1694079890.030833-CDS-S-dermatodea_contig8949:2577..26401694079890.030833-CDS-S-dermatodea_contig8949:2577..2640Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8949 2578..2640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8949.17032.1

>prot_S-dermatodea_contig8949.17032.1 ID=prot_S-dermatodea_contig8949.17032.1|Name=mRNA_S-dermatodea_contig8949.17032.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
MATAVRHAGEVAMSVNDRGCIKVTVDGFCVLARSGPRACEFLNTFPCRRR
WSPGYEVLAVKDGLEVHLNDKKIWGVQAPKTVEKEGGKSGERSFFGVTAA
DIM*
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mRNA from alignment at S-dermatodea_contig8949:1101..2655-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8949.17032.1 ID=mRNA_S-dermatodea_contig8949.17032.1|Name=mRNA_S-dermatodea_contig8949.17032.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1555bp|location=Sequence derived from alignment at S-dermatodea_contig8949:1101..2655- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCAAGAACCGGCGGATGGCGACAGCCGTGCGACATGCCGGAGAGGTGGC
CATGTCGGTGAACGACCGGGGCTGCATCGTAAGTTGGCCGTTTTTGCGAC
GTACGCATGCATACCATGTACCGGCGTTTTGTAAGCAATTCAGCCCGGTG
TTGCACCACCGTCCTGACATGTGTCGATCATTTGGGGGCTCTTTGAAGAA
CGCGTTCCATGTGCCGTGCTTCTGCGATTCGAGTTCCAAGTAGAAGATTA
TGTGCACGGCCGCGACACGTACAACTGGCTGACACCGACCGCATCCACGA
ATGCCTTCTTCCCATCTTTCTCTCCGCCATTAATATCTGCAGAAGGTGAC
GGTTGACGGGTTCTGCGTGTTGGCAAGGTCCGGCCCCCGAGCTTGTGAGT
TTCTCAACACCTTCCCTTGCAGACGGAGGTGGAGTCCCGGGTATGAAGTG
CTAGCGGTGAAAGACGGGCTGGAGGTTCACCTGAACGACAAGAAGATATG
GGGCGTTCAGGCGCCCAAGACTGTCGAGAAGGAAGGCGGCAAGTCCGGAG
AGCGGAGCTTCTTCGGGGTTACAGCAGCAGACATTATGTAGCTTGGTGAA
TGCCTTCTTCCCGTTGTTGTAGTGGTCATTTGGCCTTCCCCAGGAGACTA
GCTTTTTTATTTCATGTCTGCAATTCATATGTAGGGCGGAGTGTACGTAC
ACTTAGAGTTACCATGTTCGTCGCAGTCGACTTTTGGACTTGTGCGGAGG
TGGTGAATAAAAACCTGCCAACAGATGAACATATTTATATGTCTTCAAGT
TGCGGGTACCGCTGTAGTGCTCCTCCCTGTCGAAGACATGAGTCGATAAT
CTGCTTCGCGTACCCGTCATGATGGTACCCTGTATAGCACTGGTCTTGGT
GATGCGTGCAAGCATTGCGCTTGGCGTTTTTGGTCGGAGGATTTGTTTTT
GCACGAACGGGCTGCCGCAGCTTTCGCGCTGTTCGATTTTGGGCTGGTCC
AATGCTCCATGTATTATATGTGTATGTACAGTATAAAAGCCGAGACTATT
TCTGGTTGTGATCCCCTCCCCTCTCGCTGGAAGATGATGCGTTTTGCTCT
CCCGACCTTTCGTCGTTTTCACTTGAAAACAAACCAGCAATTTTTATATC
GTCACCACTGCACTTCTTTTTACTGCACGATGTTCACAGGGGCGGTGGAA
TGGGCTCACTTAATTGTCCAGAGCCCCCCAGGGTCCTTCATCCTCCTACT
GTATTGGCATTGCTGTGTACTGTAGTCGTTTTACCACGAGTATCGGTTGC
CTCTGGTGTTAGGTGCATGCGCTGGGGTACCAGGTACATGGTTTGGATTG
TTGTGTTTTTGTTTTCTGGGATGCCGTTACACCTGAACGGGAACTGCTTG
TAGTGCGACAATACGCTGCATGTATATTAATGTGCCCTCCGATAATTTGC
AGACTCGGAATATGGGAAGTAGTAACGAGTTCCAGGAAAAGGCGTTTTGC
CTCTGCCTTCTTTCCTCTTAGGCTCTTGCTAACTTGCTCATCCGTGACAC
TTCCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8949:1101..2655-

>mRNA_S-dermatodea_contig8949.17032.1 ID=mRNA_S-dermatodea_contig8949.17032.1|Name=mRNA_S-dermatodea_contig8949.17032.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig8949:1101..2655- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGACAGCCGTGCGACATGCCGGAGAGGTGGCCATGTCGGTGAACGA
CCGGGGCTGCATCATGGCGACAGCCGTGCGACATGCCGGAGAGGTGGCCA
TGTCGGTGAACGACCGGGGCTGCATCAAGGTGACGGTTGACGGGTTCTGC
GTGTTGGCAAGGTCCGGCCCCCGAGCTTGTGAGTTTCTCAACACCTTCCC
TTGCAGACGGAGGTGGAGTCCCGGGTATGAAGTGCTAGCGGTGAAAGACG
GGCTGGAGGTTCACCTGAACGACAAGAAGATATGGGGCGTTCAGGCGCCC
AAGACTGTCGAGAAGGAAGGCGGCAAGTCCGGAGAGCGGAGCTTCTTCGG
GGTTACAGCAGCAGACATTATGTAGAAGGTGACGGTTGACGGGTTCTGCG
TGTTGGCAAGGTCCGGCCCCCGAGCTTGTGAGTTTCTCAACACCTTCCCT
TGCAGACGGAGGTGGAGTCCCGGGTATGAAGTGCTAGCGGTGAAAGACGG
GCTGGAGGTTCACCTGAACGACAAGAAGATATGGGGCGTTCAGGCGCCCA
AGACTGTCGAGAAGGAAGGCGGCAAGTCCGGAGAGCGGAGCTTCTTCGGG
GTTACAGCAGCAGACATTATGTAG
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