mRNA_S-dermatodea_contig8940.17029.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8940.17029.1
Unique NamemRNA_S-dermatodea_contig8940.17029.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8940.17029.1 vs. uniprot
Match: D8LSB8_ECTSI (PNPLA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSB8_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 3.350e-115
Identity = 189/248 (76.21%), Postives = 208/248 (83.87%), Query Frame = 1 
Query:   10 KVNPHASLLSTMALSKSVWSPPMYSFLVGLVGFLQAQVRNWFRNVIEFVSHRRMAPVWASKRGGIQLLTQEYEGRHCDVTITPWKGEENVLSSFAKMLKNVSIPEFLVMAGVAERNTWPRVEMIRSHCAVEMGLEQCVQTLRRQLTAENQVRLLASSVSQHPSSEELKRRGRVSSFYTSRSLVNLSGLSVTDPSIVMDQPQPSVGEVTSALSAALPNRQPSFGSRPSFSSDHNVIEEEGEGDGDVGLS 753
            +VNPHASLLSTMALSKSVWS P YSFLVG+VGFLQ QVRNWFRNVIEFVSHRR+APVWASKRGGIQLLTQEYEGRHCDVTITPWKGEENVLSSFAKMLKNV+  EF VM  VAERNTWP+VEMIRSHCAVEM LEQCVQTLRRQLTAENQVR+LA+S  QHPSSE+L+R GRVSSFYTSRSLVNLSGLSVTDPSIVM+Q                P++ PS  +  +  +D  ++EE+   DGDVGL+
Sbjct:  458 QVNPHASLLSTMALSKSVWSSPTYSFLVGIVGFLQTQVRNWFRNVIEFVSHRRLAPVWASKRGGIQLLTQEYEGRHCDVTITPWKGEENVLSSFAKMLKNVNTEEFHVMTIVAERNTWPKVEMIRSHCAVEMSLEQCVQTLRRQLTAENQVRMLAAS--QHPSSEQLRREGRVSSFYTSRSLVNLSGLSVTDPSIVMEQ---------------QPHQYPSSSTLAAIGNDSAILEEKDGDDGDVGLN 688
[Close]
BLAST of mRNA_S-dermatodea_contig8940.17029.1 vs. uniprot
Match: A0A835ZEF1_9STRA (Acyl transferase/acyl hydrolase/lysophospholipase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEF1_9STRA)

HSP 1 Score: 252 bits (644), Expect = 1.320e-74
Identity = 133/202 (65.84%), Postives = 160/202 (79.21%), Query Frame = 1 
Query:    1 FLV-KVNPHASLLSTMALSKSVWSPPMYSFLVGLVGFLQAQVRNWFRNVIEFVSHRRMAPVWASKRGGIQLLTQEYEGRHCDVTITPWKGEENVLSSFAKMLKNVSIPEFLVMAGVAERNTWPRVEMIRSHCAVEMGLEQCVQTLRRQLTAENQVRL--LASSVSQHPSSEELK---RRGRVSSFYTSRSLVNLSGLSVTDP 588
            FLV +VNPHA++ STMALSKSVW+ P+YSFLVGLVGFL+AQVRNWFRNV+EFVS RRMAP+WA++RGGIQLLTQEYEGR  DVTI+PW+G E +LSSF+KML N S  EF  M  V+ERNTWP+V+MIR HCAVE+ LEQCV+  RRQ+ AE Q +   LA++V   P    +    R GRV SFYTSRSLVN++GL +  P
Sbjct:  474 FLVSQVNPHATVFSTMALSKSVWNHPVYSFLVGLVGFLKAQVRNWFRNVLEFVSLRRMAPIWATRRGGIQLLTQEYEGRDSDVTISPWEGHETLLSSFSKMLSNPSRREFANMVTVSERNTWPKVDMIRVHCAVEVALEQCVRAARRQVVAEAQAQAVRLAAAVGAAPGGAAIAASMRGGRVPSFYTSRSLVNMAGLGLGLP 675
[Close]
BLAST of mRNA_S-dermatodea_contig8940.17029.1 vs. uniprot
Match: A0A7S2XZ06_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ06_9STRA)

HSP 1 Score: 189 bits (480), Expect = 3.290e-55
Identity = 99/192 (51.56%), Postives = 129/192 (67.19%), Query Frame = 1 
Query:   10 KVNPHASLLSTMALSKSVWSPPMYSFLVGLVGFLQAQVRNWFRNVIEFVSHRRMAPVWASKRGGIQLLTQEYEGRHCDVTITPWKGEENVLSSFAKMLKNVSIPEFLVMAGVAERNTWPRVEMIRSHCAVEMGLEQCVQTLRRQLTAENQVRLLASSVSQHPSSEELKRRGRVSSFYTSRSLVNLSGLSVTD 585
            +VNPHA+LLS ++L  SVW  P+Y   +GL+ FL++QVR W R+ IE +  +R AP W+++RG  Q++TQEY+GR CD+TI+PW G E VLS+F KML N S  E+  M    ERNT+P V  +RSHCAVEM LE CVQ LR++LT E    +  S  +          R RV SFYTS S V+LSGL+VTD
Sbjct:   23 QVNPHAALLSNLSLEGSVWINPVYGMFLGLLHFLKSQVRAWLRHAIELIVLQRKAPSWSTRRGFSQIITQEYQGRDCDITISPWSGYETVLSAFMKMLANPSKQEYTEMVHRGERNTFPTVARVRSHCAVEMELETCVQKLRKKLTLERDEVVSQSGPA----------RDRVPSFYTSSSCVDLSGLTVTD 204
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BLAST of mRNA_S-dermatodea_contig8940.17029.1 vs. uniprot
Match: A0A7S3HKW2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKW2_9STRA)

HSP 1 Score: 181 bits (458), Expect = 3.040e-49
Identity = 87/199 (43.72%), Postives = 132/199 (66.33%), Query Frame = 1 
Query:   10 KVNPHASLLSTMALSKSVWSPPMYSFLVGLVGFLQAQVRNWFRNVIEFVSHRRMAPVWASKRGGIQLLTQEYEGRHCDVTITPWKGEENVLSSFAKMLKNVSIPEFLVMAGVAERNTWPRVEMIRSHCAVEMGLEQCVQTLRRQLTAENQVRLLASSVSQHPSSEE------LKRRGRVSSFYTSRSLVNLSGLSVTDP 588
            +VNPH+++LS+M ++ +VWS P+Y+ LVG + FL AQ R+W +N+++    R  AP+W+S+RG  Q +TQ+YEGR  DVTI PW G  +  ++    + N +  E++ +   AE NTWP +  IR+HC VE  LEQCVQ LR+++TAE++   LA+    +    +      + ++ R  SFYTS+SLVNLSGLS++DP
Sbjct:  224 QVNPHSAILSSMGMAATVWSNPVYNTLVGYLRFLTAQCRDWVKNIVKLFIFRSRAPIWSSRRGFTQTITQDYEGRDVDVTINPWSGHISAATALMSAIHNPTEEEYVAVVHAAEVNTWPAIPRIRAHCLVETTLEQCVQRLRKRMTAESEAAQLAALNHHYQQQGDAGANPGMFKKDRTPSFYTSKSLVNLSGLSISDP 422
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BLAST of mRNA_S-dermatodea_contig8940.17029.1 vs. uniprot
Match: A0A7S3HKS5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKS5_9STRA)

HSP 1 Score: 181 bits (458), Expect = 2.000e-48
Identity = 87/199 (43.72%), Postives = 132/199 (66.33%), Query Frame = 1 
Query:   10 KVNPHASLLSTMALSKSVWSPPMYSFLVGLVGFLQAQVRNWFRNVIEFVSHRRMAPVWASKRGGIQLLTQEYEGRHCDVTITPWKGEENVLSSFAKMLKNVSIPEFLVMAGVAERNTWPRVEMIRSHCAVEMGLEQCVQTLRRQLTAENQVRLLASSVSQHPSSEE------LKRRGRVSSFYTSRSLVNLSGLSVTDP 588
            +VNPH+++LS+M ++ +VWS P+Y+ LVG + FL AQ R+W +N+++    R  AP+W+S+RG  Q +TQ+YEGR  DVTI PW G  +  ++    + N +  E++ +   AE NTWP +  IR+HC VE  LEQCVQ LR+++TAE++   LA+    +    +      + ++ R  SFYTS+SLVNLSGLS++DP
Sbjct:  481 QVNPHSAILSSMGMAATVWSNPVYNTLVGYLRFLTAQCRDWVKNIVKLFIFRSRAPIWSSRRGFTQTITQDYEGRDVDVTINPWSGHISAATALMSAIHNPTEEEYVAVVHAAEVNTWPAIPRIRAHCLVETTLEQCVQRLRKRMTAESEAAQLAALNHHYQQQGDAGANPGMFKKDRTPSFYTSKSLVNLSGLSISDP 679
[Close]
BLAST of mRNA_S-dermatodea_contig8940.17029.1 vs. uniprot
Match: A0A7S0SX85_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SX85_9STRA)

HSP 1 Score: 178 bits (451), Expect = 3.850e-48
Identity = 94/193 (48.70%), Postives = 129/193 (66.84%), Query Frame = 1 
Query:   10 KVNPHASLLSTMALSKSVWSPPMYSFLVGLVGFLQAQVRNWFRNVIEFVSHRRMAPVWASKRGGIQLLTQEYEGRHCDVTITPWKGEENVLSSFAKMLKNVSIPEFLVMAGVAERNTWPRVEMIRSHCAVEMGLEQCVQTLRRQLTAENQVRLLASSVSQHPSSEELKRRGRVSSFYTSRSLVNLSGLSVTDP 588
            +VNPH++LLS++ L  SVWSPP+Y  +V  + FL+AQ R+W +NV   +  R +APVW++KRG    LTQ+YEGR  D+TI PWKG  +V  SF   L N S  EF+ +   AE+ +WP +  IR++C VE+ L++CVQ+LRR+++ EN+    AS V+        K   R  SFYTSRS+VNLSGLSV DP
Sbjct:  405 QVNPHSALLSSLTLQTSVWSPPIYGAVVSYIRFLRAQCRDWLKNVSTLLISRALAPVWSNKRGITMFLTQDYEGRAEDITIFPWKGHISVFKSFLLPLTNFSEKEFIDIFHEAEKASWPYISRIRANCMVELTLDRCVQSLRRKISLENEK---ASIVN--------KTIDRTPSFYTSRSIVNLSGLSVADP 586
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BLAST of mRNA_S-dermatodea_contig8940.17029.1 vs. uniprot
Match: A0A7S1FRU7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRU7_9STRA)

HSP 1 Score: 162 bits (409), Expect = 7.130e-42
Identity = 84/201 (41.79%), Postives = 124/201 (61.69%), Query Frame = 1 
Query:   10 KVNPHASLLSTMALSKSVWSPPMYSFLVGLVGFLQAQVRNWFRNVIEFVSHRRMAPVWASKRGG-IQLLTQEYEGRHCDVTITPWKGEENVLSSFAKMLKNVSIPEFLVMAGVAERNTWPRVEMIRSHCAVEMGLEQCVQTLRRQLTAENQV--------RLLASSVSQHPSSEELKRRGRVSSFYTSRSLVNLSGLSVTD 585
            +VNPHA +L++ +LSKS+WS      + G++ FL+ Q++ W RN IE V  RR+AP+W ++RG  +QLLTQEYEGR CDVT+ PW+ + ++  SF + + N +  EF      AER TW  + M+R+HCAVE+ L+ CVQ LR+Q+  E+Q             +S+  +           + SFYTS SL+NL GL++ D
Sbjct:  494 QVNPHACMLASFSLSKSIWSNAFVGVVNGILQFLKKQIKGWIRNFIELVGGRRIAPLWDTRRGFFVQLLTQEYEGRDCDVTLNPWENDISLFKSFFRCIYNPTDKEFFDWMKAAERETWKYIPMVRNHCAVEVTLDCCVQRLRKQIMNESQAWQSQQKLGETNGTSLGGNRXXXXXXXXXXMPSFYTSPSLINLGGLAIGD 694
[Close]
BLAST of mRNA_S-dermatodea_contig8940.17029.1 vs. uniprot
Match: A0A7S2MEK0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MEK0_9STRA)

HSP 1 Score: 154 bits (388), Expect = 4.420e-40
Identity = 91/228 (39.91%), Postives = 129/228 (56.58%), Query Frame = 1 
Query:   10 KVNPHASLLSTMALSKSVWSPPMYSFLVGLVGFLQAQVRNWFRNVIEFVSHRRMAPVWASKRGGI-QLLTQEYEGRHCDVTITPWKGEENVLSSFAKMLKNVSIPEFLVMAGVAERNTWPRVEMIRSHCAVEMGLEQCVQTLRRQLTAENQVRLLASSVSQHPSSEELKRRGRVSSFYTSRSLVNLSGLSVTDPSIVMDQPQPSVG-----------EVTSALSAALP 657
            +VNPHA   S+  L+KSVW+     +  G++ FL+ Q+R WFRN+IE V  RR+AP+W ++RG + Q  TQEYEGR CD+++ PW+   +V S+    + N +  E L  A  AER TW  +  I+SHCA EM L++CVQ LR ++  E++         +   S   K   RV SF+TS SLVN  GL V D   +  Q   + G           E +++ SAALP
Sbjct:  112 QVNPHAVFFSSFNLNKSVWTNHFIGWTHGILLFLKNQLRAWFRNIIELVGGRRIAPLWDTRRGIMSQFFTQEYEGRDCDISLIPWQSHRSVFSALLHCIYNPTHEEVLEWAAAAERETWRHIPAIKSHCAEEMTLDRCVQRLRMRILQESR------GAKKGIESTNEKMGQRVPSFFTSPSLVNFGGLGVGDRYNIHQQDSETSGVNTGPTASTQRENSTSSSAALP 333
[Close]
BLAST of mRNA_S-dermatodea_contig8940.17029.1 vs. uniprot
Match: A0A7S3PX62_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PX62_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.000e-34
Identity = 76/196 (38.78%), Postives = 116/196 (59.18%), Query Frame = 1 
Query:   10 KVNPHASLLSTMALSK---SVWSPPMYSFLVGLVGFLQAQVRNWFRNVIEFVSHRRMAPVWASKRG-GIQLLTQEYEGRHCDVTITPWKGEENVLSSFAKMLKNVSIPEFLVMAGVAERNTWPRVEMIRSHCAVEMGLEQCVQTLRRQLTAENQVRLLASSVSQHPSSEELKRRGRVSSFYTSRSLVNLSGLSVTD 585
            + NPHA  L++  +SK   ++W+  + + L G++ FL+ Q + W  N++E +  +R+AP+W ++RG G Q  TQEYEGR  DV++ PW    ++ S+    + N S  E+L     AER TW  +  I+SH AVEM L++CVQ LR+        R++  S+       + +   RV SF+TS SLVN+SGL VTD
Sbjct:  431 QANPHAVFLTSFGMSKIGKNIWNNRVMNLLSGVLLFLKNQAKCWIGNIVEMIGGQRIAPMWDTRRGFGKQFFTQEYEGRDIDVSLIPWINHRSLFSALLHCIYNPSREEWLEWVSAAERETWRYIPKIKSHVAVEMTLDKCVQRLRK--------RIVVESIDTKGIMNKERMNNRVPSFFTSASLVNMSGLGVTD 618
[Close]
BLAST of mRNA_S-dermatodea_contig8940.17029.1 vs. uniprot
Match: A0A7S2GPY8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GPY8_9STRA)

HSP 1 Score: 125 bits (315), Expect = 6.780e-31
Identity = 75/197 (38.07%), Postives = 108/197 (54.82%), Query Frame = 1 
Query:   10 KVNPHASLLSTMALSKSVWSP----PMYSFLVGLVGFLQAQVRNWFRNVIEFVSHRRMAPVWASKRGGIQLLTQEYEGRHCDVTITPWKGEENVLSSFAKMLKNVSIPEFLVMAGVAERNTWPRVEMIRSHCAVEMGLEQCVQTLRRQLTAENQVRL-LASSVSQHPSS-----------EELKRRGRVSSFYTSRS 552
            + NPHA+LLS + +S  + SP    P+ S       FLQ Q+R W  +++   S     P +A +RG  Q+L QEYEGR CDVTI  W G   ++    K+  N+S  +   +   AERNTWP +  I+SHCA+E  LE+ VQ LRR+L ++ + RL ++ +   +PS            +   R GRV SF+TS S
Sbjct:   21 QANPHAALLSALPISALMHSPVAHLPLISIAAHATQFLQLQIRGWLNHMVNLASST--LPEYAIRRGVTQMLLQEYEGRDCDVTIFAWHGHSTMVRGVLKLADNLSREDLSEVILAAERNTWPHLAKIKSHCAIEFCLEESVQRLRRRLASDQKTRLNVSGNGGSNPSQPHETPVSSLEPQTPSRVGRVPSFFTSPS 215
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8940.17029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSB8_ECTSI3.350e-11576.21PNPLA domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A835ZEF1_9STRA1.320e-7465.84Acyl transferase/acyl hydrolase/lysophospholipase ... [more]
A0A7S2XZ06_9STRA3.290e-5551.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3HKW2_9STRA3.040e-4943.72Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3HKS5_9STRA2.000e-4843.72Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0SX85_9STRA3.850e-4848.70Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S1FRU7_9STRA7.130e-4241.79Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2MEK0_9STRA4.420e-4039.91Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3PX62_9STRA1.000e-3438.78Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A7S2GPY8_9STRA6.780e-3138.07Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8940contigS-dermatodea_contig8940:2862..8386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.8
Seed ortholog evalue3.3e-98
Seed eggNOG ortholog2880.D8LSB8
Preferred nameTGL3
KEGG rclassRC00004,RC00020,RC00037,RC00041,RC00055,RC00094,RC00523
KEGG koko:K14674,ko:K14675,ko:K21596
KEGG ReactionR01315,R01317,R01462,R02053,R02241,R02250,R02687,R07064,R07379,R07387,R07859
KEGG Pathwayko00100,ko00561,ko00564,ko00565,ko00590,ko00591,ko00592,ko01100,ko01110,map00100,map00561,map00564,map00565,map00590,map00591,map00592,map01100,map01110
KEGG ModuleM00089,M00098
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004620,GO:0004623,GO:0004771,GO:0004806,GO:0005575,GO:0005622,GO:0005623,GO:0005811,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006642,GO:0006644,GO:0006793,GO:0006796,GO:0007114,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012511,GO:0016042,GO:0016298,GO:0016740,GO:0016746,GO:0016747,GO:0016787,GO:0016788,GO:0019433,GO:0019637,GO:0019954,GO:0032505,GO:0042171,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044424,GO:0044464,GO:0046461,GO:0046464,GO:0046486,GO:0046503,GO:0047499,GO:0051301,GO:0052689,GO:0071617,GO:0071618,GO:0071704,GO:1901575
EggNOG free text desc.triglyceride mobilization
EggNOG OGsCOG1752@1,KOG2214@2759
EC2.3.1.51,3.1.1.13,3.1.1.3,3.1.1.4
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPatatin/Phospholipase A2-related
Ec32 orthologEc-21_003120.1
Exons5
Model size753
Cds size753
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8940.17029.1prot_S-dermatodea_contig8940.17029.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8940 2862..8386 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925373.9756014-CDS-S-dermatodea_contig8940:2861..30371622925373.9756014-CDS-S-dermatodea_contig8940:2861..3037Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8940 2862..3037 -
1694079889.8230026-CDS-S-dermatodea_contig8940:2861..30371694079889.8230026-CDS-S-dermatodea_contig8940:2861..3037Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8940 2862..3037 -
1622925373.9886756-CDS-S-dermatodea_contig8940:4595..47131622925373.9886756-CDS-S-dermatodea_contig8940:4595..4713Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8940 4596..4713 -
1694079889.837653-CDS-S-dermatodea_contig8940:4595..47131694079889.837653-CDS-S-dermatodea_contig8940:4595..4713Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8940 4596..4713 -
1622925374.0005965-CDS-S-dermatodea_contig8940:5206..53231622925374.0005965-CDS-S-dermatodea_contig8940:5206..5323Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8940 5207..5323 -
1694079889.8477917-CDS-S-dermatodea_contig8940:5206..53231694079889.8477917-CDS-S-dermatodea_contig8940:5206..5323Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8940 5207..5323 -
1622925374.0099676-CDS-S-dermatodea_contig8940:6107..63291622925374.0099676-CDS-S-dermatodea_contig8940:6107..6329Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8940 6108..6329 -
1694079889.857779-CDS-S-dermatodea_contig8940:6107..63291694079889.857779-CDS-S-dermatodea_contig8940:6107..6329Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8940 6108..6329 -
1622925374.0195215-CDS-S-dermatodea_contig8940:8266..83861622925374.0195215-CDS-S-dermatodea_contig8940:8266..8386Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8940 8267..8386 -
1694079889.8750749-CDS-S-dermatodea_contig8940:8266..83861694079889.8750749-CDS-S-dermatodea_contig8940:8266..8386Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8940 8267..8386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8940.17029.1

>prot_S-dermatodea_contig8940.17029.1 ID=prot_S-dermatodea_contig8940.17029.1|Name=mRNA_S-dermatodea_contig8940.17029.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=251bp
FLVKVNPHASLLSTMALSKSVWSPPMYSFLVGLVGFLQAQVRNWFRNVIE
FVSHRRMAPVWASKRGGIQLLTQEYEGRHCDVTITPWKGEENVLSSFAKM
LKNVSIPEFLVMAGVAERNTWPRVEMIRSHCAVEMGLEQCVQTLRRQLTA
ENQVRLLASSVSQHPSSEELKRRGRVSSFYTSRSLVNLSGLSVTDPSIVM
DQPQPSVGEVTSALSAALPNRQPSFGSRPSFSSDHNVIEEEGEGDGDVGL
S
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mRNA from alignment at S-dermatodea_contig8940:2862..8386-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8940.17029.1 ID=mRNA_S-dermatodea_contig8940.17029.1|Name=mRNA_S-dermatodea_contig8940.17029.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5525bp|location=Sequence derived from alignment at S-dermatodea_contig8940:2862..8386- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTCTCGTCAAGGTTAACCCGCACGCGTCCCTGCTGTCGACGATGGCCCT
CTCCAAGAGCGTGTGGAGCCCTCCGATGTACAGCTTCCTGGTTGGGCTCG
TGGGCTTCCTTCAGGCGCAGGTTTGTTCACATCGCGGGGCGGTTTGCTTT
TGTTTCGGCCCCCCTCACTCACCCGGTACATCCAATCAACCCATGGCTTA
TCGGTTTGGCGTCGCAAAGACAAGGAATGATGGCTACGATAGCAGCTGGG
TACCATCCTTTTGAAACGCAGCCTGGTCGGTGAACACCCGGCATATCTAT
CGCTCCGTCCCGGCATGGTTGGGACGCGTGGTCTATGTCTGTCTGGATAC
GACATGCGTTTTAACGATAGTTACACCCCCCTCCCCTCACCCACAGACCC
TTCATGTCAACACAATAAACCCTGTGGCGTGACAACCACCAAAACTGTTG
CGGGGGAACACAGTTAACAGGGTGGACCAAATATACGAAACGTCTTTCCT
CGATAATTAACCAAAGTTGAAAAAATATCTGTTGCCTTAAGAGCCCCACT
ACAGCACCTACGTACCTTCCGGCTCAGGACTCCTGTTTCTACTGCTACAG
CTATATAGTGCTGTTGCGGTAACGAAAAACGAGAAACGAAAAAATTCGAA
GGATGCTAAGACCTTTTTTTTCTTTGCATGCTGTGTTTACAGACATCTTA
TGATACAAGTATGAATAGGTGTTCTCGACTGTCAGCACGACCGTGTGTTG
TCGATGTCCAAAAACAAAATAAGACATTTTACTTTCATTTTTTATTTTCT
GTTTCATTAGTTTTTTTTTTTTTTTGCGTAACGGTTGCCAGACCAGCGGG
AGCGCTGAGCCCTCCCTGCTGTAGGAGAGGAGACCGTTCTTCTTCTTGTT
GTTTTCGTTTGTTTTTCCTTTTCTTAGCAGGCCCAAGTTCCGAGGCATGC
CCCCTCTGTTTCCGAGAGTTAGGTTATGTCAATTCCTTCTTGTATGTACT
ATATAGGTAATTCCGTCGAGTTGTTTTCTCGACCTCTCGATTTTCTCATC
TGACCACGAGCGGGACTGGCAACCATTGGTGGGCCGGTCGGTTGTAAGTG
CGATAATAACTATAATACTAATTATTACTAGTGTTATTAATTTTTTTCGC
ACACGCAGGTGGTTAGATTTTCGGGTCGGTACTTTTACTGATTTGGTGGT
TTTGTCAACAACTCAATGTTTGGTTTGTTAATTGCGCTCCACCGTAATAG
AAGCTTCGCACCCTACAGTAGCAGTACATAACTTTAATACTTTATATAAT
CACATTTGTAAAATGCTTTCGTTGTTTATTTTTCCCGCTATTAGGTCGTC
AAGAAGAGCACCCGTCGAGAAAACGCCACGCGTCCTGGCTTTAGCGTATA
TTAGAGTCAGAACGCACCCAAACGGCAAAAGTTAGGGTTGTAAACGGTCG
TCGGTTTCCTGCAGAATGGCATCTTGTCGTCCTGGGCTTGGAGGTTTTGC
TTTTGTGACGCGAGAATTGAGCAGAAAATAAGTCGCGAGCGTCCTATGAC
ACTGGCGCGAGGCGATAGGAGCGCTAAACGCTAGGAGTACATACGCAGCG
AGAGAAAACCACGCGACGTGGGTTTTGCCTAGAGCCGGAAGGGGTCCATA
GCTTGCCCGGTCTTCGGCTTCGTGCAGGATTTAGGTATTTGTCGTCCTGG
GCTTGGGGGTGTTGCTATAAATAGTGACAAAATAATGGAGAAAATTGAAA
GATCGAAGTCGTGGGTCGAGGCCACAGGAGAAAGCCACAGCAGCAAGAAC
GATGAATGGTGGAGGAGGTTGTTCCCCTTAACAAAATAAAATAGTTTTAC
GGAGTGAGATGCTGGTGTTCACGGCCGTCTTTTGGTGCGAAGGGGGATCC
CAGCGTGCTTACTTAAACTATTTATAACATGGTGAGAGCAAGCCCCCCCC
CCCCCGCCCGCTTGAAAACAGAGCTAATTTCGAAAACGTAGAGCGAGCGT
TGGGGTCCAACATTTCCCTCGCCCTTTCCCTCCGCCCCCGGCGCCCGGTC
TCGGCAGGTTCGCAACTGGTTCCGCAACGTCATCGAGTTCGTTTCCCACC
GCCGCATGGCCCCCGTGTGGGCGTCCAAGCGCGGGGGTATCCAGCTTCTG
ACACAGGAGTACGAGGGTAGGCACTGTGACGTCACAATCACCCCGTGGAA
GGGGGAGGAGAACGTTCTGTCGTCCTTCGCCAAGATGCTCAAGAACGTCT
CGATCCCGGAGTTCCTTGTCATGGCAGGGGTGCGTTTTTTGTTTTGTTTG
CGTGGTGTGTGTCGGGGGAGGGGGGGGGCGGGGCGGAGAGGGGAGGGGAG
AGGGTGAAAGGTTGTTTGTGTCTCTCTCTCGAAGGTGACTGTTGCTGTGC
TCGCACAGTAAAGAAAGACAGCAACGCTCCATTATACCGGAAACTTGAGT
TGTCTTTCTTGCGCCAAAAAGCGTGTCTAAGGTGAACTTCATCGTGACTA
GACGGTAGCCAAGGCTACGGTCCGTGAGGCGGGGGCTGGCACAAATTGCT
ACCCTGTAAGGTACCTGGTACCACTTTATACGCCCTATGGTATTTGGCAT
CACAAATTGTATAGGAAATTTGGCATCAAATGTCAACTCTACATCGTTAT
AAAAAAACGTGCAAAGCGGTACCAGAAATTATTTAATTGTTATAAATTAG
AGGTGTGCCTGACTTGGGGCGGTAGTTGTTGCTTTTCTCTCGCTCGTAGC
ATGTTGGGTGTGTTTGTTGCGCTTGCTAGAGCTGTTGTTTCGAAGTTCAA
AGAGAGAGAGAGACGTTGTTACCACTGCTGTGTACGCGGCATGGAGAGGG
GCAAGAACGAAGCGCGCCGTGTTTAGGAGAACCCAAGGGATAGTCCCCGT
CAAGAGTTGCGGCTGCTACAACATAATTCTGTTGTACTTCAACAATTCCG
TGTTACCTCTCGCACTTCAGTGCAGTCGTAGCAGTGTCTGCAGCCTTGGG
GGGTCCATGTTTTCGATTGAACAGCTAGCGTGTACAATGCCCGCCGTGTT
TTCCGAACCTCAGGTGGCCGAGCGCAACACCTGGCCCAGGGTGGAGATGA
TCAGGAGCCACTGCGCTGTGGAGATGGGTCTGGAGCAGTGCGTGCAGACC
CTGCGTCGACAGCTGACCGCCGAGAACCAGGTGTGATCTCCAACCCTAGC
CGACGAAGCACCTGATAAACTGCTGTTACAGAGGTCCTGTGATGTGCCGG
TGTGCTTCTCGTTGCGTGCGGTTCGCGTGTTAGTGGTCAACGGAGATTTT
CCTTGTTTCGGGTGAGTGGGCCCTGTCTGTATTGGGGCGATTACTGCTTT
AGCGCAACGAACAATATAGCGAGGAGCATTGTGATTACAGTATGTATGAT
GTGTGTTTCGGGCTTGGGTTTCCGGCGGATATACTTGTATAGAAAGCAGT
TGTGTTTTGTTGTGGCAAAACTGTAAAAGCCTTTTGTCACCCCTCTCTTG
CTTAGAAAACGGCCGCTCATGCTCTAGCAAAAGGCTGACCCCCACCCCCT
CCCCTCGCGCCCCCGCGCGCTCAGTCCAGCCTCTTTTATCACGGTAAACT
CCCTCGATTTCCACCTTCTGGACACCTGACGCGCACATTCCTTTTGTCAC
ACCCCCGTCCTCCCGGTCGTTAGGTCCGCCTGTTGGCGTCGTCGGTTTCC
CAACACCCTTCCTCCGAGGAGCTCAAGCGACGCGGGCGCGTGTCCAGCTT
CTACACGTCTAGGTCTCTGGTCAACCTGTCGGGGCTGAGCGGTAAGCCGG
GACACAAACATGGCAGGGAGTTTGATACCCCTCCTACCTTCCACCGCCCC
CGCACGTCGCCTGCCTCGTTTCTGAGAAAATCACGTTCTGTGACACGACC
CCTTTTGTTGACGCCCGCCCTAGTATCATACATGGACGCTAATTAGTATA
TGTAGGATGCACGTGACAACCCCACGCCACCTTCGGTCGGCTGGGCCATC
GTTGTGCGATTCGATGAAAATGCTGTTACGCTGAAGCGATGACCCCGCCC
TGGTATATGGTGGCCTCTCTCTCCGTTTTGGTAAACTCGCCAACTCGCAA
GCGGTTTCTCTTTCCTAAATCCCGCTCAAAGATGCAGTATGGCGGAACGA
TTCATCGGTCGATTGATCTGGTCGATTCTCGCACTTCAACGGGACCTGGC
TGGTGCATAACCGTTTGTAGTGAGATGAGAGTAATCGTGAGAGAGAGAGA
TAGAAGAGACGTCAAGTCCTGCGGACCAAGAAATGCGCATTTTTATCATG
TCGCACCCGCTTTTTTACTTCTATCTTTCTCGTGCAACCACGAGCGGCAT
CGGCGACCAGTGGCGGTCAGTCCGGTCGTATGAAAATTGCGATAGGAAGC
CAACCAACCAAACTAGCCTGCGGTAATTCCCCAGCAGCAAGGGGTCGACC
ACATTTGCCCCTCTCTTGGAAAAGCGTACCCTAATACTGTACTCTGTATT
GAAGCTGTATATACTCCTGCATACTCTTGGCCATGCATTCTAGCTTACGA
CGGCGTCTGCTGCAGGCACCCAAAACATATATAACACGTGGCCAGATGTG
AGCAGTACTGTAGCGGGCCAAACCAACCATACCAACGGAAAATGATCGTA
AGACGACGATTTGTGCAAGAAACAGCTGTATTGGATCGATCTTACCCCAG
AGTTGCACGGAGGGAGATTTTTACCCGTGGGTCGGGTTTCCCCATCATGA
TTGGAGGACCGTATGGGACCGCAAGACGTGCGGCCACTCGTAGCTACTGC
TACTTACAACAGCATTCCAGGTAGCGTCAGTGCCAACAATCACAAACTCG
GGACATGGCAATATCGGCTCCTAGCCTTGGGCGCGTTGGTTGAAACAAGA
GGCATCACCACCCCCTACCTAAAAAATTAAAACGATTAAAAACAAATTAG
AGCGAGCGTTGAGGTCCCACCGTTTTAACCAGGAAATATGGTCCAAGCTA
CACCTAGGGAGGCTTACGTTACGCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCTTTTTTTTTCCCCCGGGGACCCGGGGGG
GGGAAGAAAAAGAACACCCCCCCCCCCGAGAGGTGGACCGCCCGGCNNNN
NNNNNNGTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGGGGGGGG
GGGGCCCCCCCCTTTTTACAGAAAAAATGGGCCCAACCCCACCCCCGGGG
GGCTTCCTTTCTCCCCCCCCCCCCCCCCCCCCTCCCCCCTCGCCCTGTGC
CCACGCCCTGTTTATGCTTACGCGTGACGACTCGGGTGGGAACCAACAGT
GACCGATCCCAGCATCGTGATGGACCAGCCGCAGCCTTCGGTCGGAGAGG
TTACCTCTGCCCTTAGCGCGGCGTTGCCGAATCGCCAGCCGTCGTTCGGA
TCTCGGCCGTCCTTCAGCAGCGACCACAACGTCATCGAGGAGGAGGGTGA
AGGGGACGGGGACGTGGGGCTTAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8940:2862..8386-

>mRNA_S-dermatodea_contig8940.17029.1 ID=mRNA_S-dermatodea_contig8940.17029.1|Name=mRNA_S-dermatodea_contig8940.17029.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at S-dermatodea_contig8940:2862..8386- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTCTCGTCAAGGTTAACCCGCACGCGTCCCTGCTGTCGACGATGGCCCT
CTCCAAGAGCGTGTGGAGCCCTCCGATGTACAGCTTCCTGGTTGGGCTCG
TGGGCTTCCTTCAGGCGCAGTTTCTCGTCAAGGTTAACCCGCACGCGTCC
CTGCTGTCGACGATGGCCCTCTCCAAGAGCGTGTGGAGCCCTCCGATGTA
CAGCTTCCTGGTTGGGCTCGTGGGCTTCCTTCAGGCGCAGGTTCGCAACT
GGTTCCGCAACGTCATCGAGTTCGTTTCCCACCGCCGCATGGCCCCCGTG
TGGGCGTCCAAGCGCGGGGGTATCCAGCTTCTGACACAGGAGTACGAGGG
TAGGCACTGTGACGTCACAATCACCCCGTGGAAGGGGGAGGAGAACGTTC
TGTCGTCCTTCGCCAAGATGCTCAAGAACGTCTCGATCCCGGAGTTCCTT
GTCATGGCAGGGGTTCGCAACTGGTTCCGCAACGTCATCGAGTTCGTTTC
CCACCGCCGCATGGCCCCCGTGTGGGCGTCCAAGCGCGGGGGTATCCAGC
TTCTGACACAGGAGTACGAGGGTAGGCACTGTGACGTCACAATCACCCCG
TGGAAGGGGGAGGAGAACGTTCTGTCGTCCTTCGCCAAGATGCTCAAGAA
CGTCTCGATCCCGGAGTTCCTTGTCATGGCAGGGGTGGCCGAGCGCAACA
CCTGGCCCAGGGTGGAGATGATCAGGAGCCACTGCGCTGTGGAGATGGGT
CTGGAGCAGTGCGTGCAGACCCTGCGTCGACAGCTGACCGCCGAGAACCA
GGTGGCCGAGCGCAACACCTGGCCCAGGGTGGAGATGATCAGGAGCCACT
GCGCTGTGGAGATGGGTCTGGAGCAGTGCGTGCAGACCCTGCGTCGACAG
CTGACCGCCGAGAACCAGGTCCGCCTGTTGGCGTCGTCGGTTTCCCAACA
CCCTTCCTCCGAGGAGCTCAAGCGACGCGGGCGCGTGTCCAGCTTCTACA
CGTCTAGGTCTCTGGTCAACCTGTCGGGGCTGAGCGGTCCGCCTGTTGGC
GTCGTCGGTTTCCCAACACCCTTCCTCCGAGGAGCTCAAGCGACGCGGGC
GCGTGTCCAGCTTCTACACGTCTAGGTCTCTGGTCAACCTGTCGGGGCTG
AGCGTGACCGATCCCAGCATCGTGATGGACCAGCCGCAGCCTTCGGTCGG
AGAGGTTACCTCTGCCCTTAGCGCGGCGTTGCCGAATCGCCAGCCGTCGT
TCGGATCTCGGCCGTCCTTCAGCAGCGACCACAACGTCATCGAGGAGGAG
GGTGAAGGGGACGGGGACGTGGGGCTTAGCTGACCGATCCCAGCATCGTG
ATGGACCAGCCGCAGCCTTCGGTCGGAGAGGTTACCTCTGCCCTTAGCGC
GGCGTTGCCGAATCGCCAGCCGTCGTTCGGATCTCGGCCGTCCTTCAGCA
GCGACCACAACGTCATCGAGGAGGAGGGTGAAGGGGACGGGGACGTGGGG
CTTAGC
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