mRNA_S-dermatodea_contig894.17028.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig894.17028.1
Unique NamemRNA_S-dermatodea_contig894.17028.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig894.17028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig894contigS-dermatodea_contig894:7142..7696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size555
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig894.17028.1prot_S-dermatodea_contig894.17028.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig894 7158..7484 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925373.9168663-UTR-S-dermatodea_contig894:7141..71571622925373.9168663-UTR-S-dermatodea_contig894:7141..7157Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig894 7142..7157 +
1694079889.795535-UTR-S-dermatodea_contig894:7141..71571694079889.795535-UTR-S-dermatodea_contig894:7141..7157Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig894 7142..7157 +
1622925373.9432635-UTR-S-dermatodea_contig894:7484..76961622925373.9432635-UTR-S-dermatodea_contig894:7484..7696Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig894 7485..7696 +
1694079889.812708-UTR-S-dermatodea_contig894:7484..76961694079889.812708-UTR-S-dermatodea_contig894:7484..7696Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig894 7485..7696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925373.9294024-CDS-S-dermatodea_contig894:7157..74841622925373.9294024-CDS-S-dermatodea_contig894:7157..7484Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig894 7158..7484 +
1694079889.803888-CDS-S-dermatodea_contig894:7157..74841694079889.803888-CDS-S-dermatodea_contig894:7157..7484Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig894 7158..7484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig894.17028.1

>prot_S-dermatodea_contig894.17028.1 ID=prot_S-dermatodea_contig894.17028.1|Name=mRNA_S-dermatodea_contig894.17028.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
MSRSGCHLPFFFRAQASFENLFTWFGASKRDPFGVPSGPTFTQDLCQQQV
RTLPPVPFIWGSFVFSHNGNTLRMKYVHNVGALRACGVGERICKSRVRDV
HEKQYWVL*
back to top

mRNA from alignment at S-dermatodea_contig894:7142..7696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig894.17028.1 ID=mRNA_S-dermatodea_contig894.17028.1|Name=mRNA_S-dermatodea_contig894.17028.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=555bp|location=Sequence derived from alignment at S-dermatodea_contig894:7142..7696+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCCGGAATGCCATAAATGAGTCGATCCGGATGTCATCTACCTTTCTTCT
TCAGGGCGCAAGCGTCATTCGAGAACTTATTCACCTGGTTTGGCGCGTCG
AAGAGGGACCCCTTCGGGGTCCCAAGTGGCCCAACTTTTACACAAGACCT
GTGCCAACAACAAGTGCGAACCCTGCCTCCTGTGCCGTTTATTTGGGGCT
CCTTCGTATTCAGCCACAACGGCAACACGTTAAGGATGAAATATGTCCAT
AATGTCGGTGCGTTGAGGGCATGTGGCGTTGGCGAGCGCATCTGTAAATC
ACGCGTGCGCGACGTCCATGAAAAACAGTATTGGGTTTTATAAAATACAA
AATCTAGTTCATCACATCTCCACCCCTAGCTCACAGGCACGCTATTAAAA
CGAAGTTCCAGGGGTAAACGAAAGTAGGCATGATGCATACCGATGGTACG
TCCTCTACGCTCTCAGTCAAGGTAAATATATATGCAACGGAGAGCATTGG
GTTATAGTGCATATAAAGCCGTCAACAGGTCGCATGACTGATCATATCAA
CACAA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig894:7142..7696+

>mRNA_S-dermatodea_contig894.17028.1 ID=mRNA_S-dermatodea_contig894.17028.1|Name=mRNA_S-dermatodea_contig894.17028.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig894:7142..7696+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGTCGATCCGGATGTCATCTACCTTTCTTCTTCAGGGCGCAAGCGTC
ATTCGAGAACTTATTCACCTGGTTTGGCGCGTCGAAGAGGGACCCCTTCG
GGGTCCCAAGTGGCCCAACTTTTACACAAGACCTGTGCCAACAACAAGTG
CGAACCCTGCCTCCTGTGCCGTTTATTTGGGGCTCCTTCGTATTCAGCCA
CAACGGCAACACGTTAAGGATGAAATATGTCCATAATGTCGGTGCGTTGA
GGGCATGTGGCGTTGGCGAGCGCATCTGTAAATCACGCGTGCGCGACGTC
CATGAAAAACAGTATTGGGTTTTATAAATGAGTCGATCCGGATGTCATCT
ACCTTTCTTCTTCAGGGCGCAAGCGTCATTCGAGAACTTATTCACCTGGT
TTGGCGCGTCGAAGAGGGACCCCTTCGGGGTCCCAAGTGGCCCAACTTTT
ACACAAGACCTGTGCCAACAACAAGTGCGAACCCTGCCTCCTGTGCCGTT
TATTTGGGGCTCCTTCGTATTCAGCCACAACGGCAACACGTTAAGGATGA
AATATGTCCATAATGTCGGTGCGTTGAGGGCATGTGGCGTTGGCGAGCGC
ATCTGTAAATCACGCGTGCGCGACGTCCATGAAAAACAGTATTGGGTTTT
ATAA
back to top