mRNA_S-dermatodea_contig89386.17026.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig89386.17026.1
Unique NamemRNA_S-dermatodea_contig89386.17026.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig89386.17026.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.730e-14
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = -3 
Query:  292 EAPQSYFGRFAVLRSRLVSHGASFSDLDAHQHLVRNLSPAFAIQKTILLSKTDLTMQTVEEVITSAYGEMEIAREEEVKNGTG 540
            E PQ YFGRFAVLRSRL  HG  FSD DA+ H+V +LS  + ++K + +S    + + +E+ +  A+ E+   REEE KNG G
Sbjct:  135 ETPQDYFGRFAVLRSRLAPHGVIFSDEDANAHMVYHLSDEYMMEKILTMSPIPRSREKIEKGVRDAHAELLRRREEEPKNGAG 217
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BLAST of mRNA_S-dermatodea_contig89386.17026.1 vs. uniprot
Match: A0A6H5KM55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM55_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.590e-8
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = -3 
Query:  319 EAPQSYFGRFAVLRSRLVSHGASFSDLDAHQHLVRNLSPAFAIQKTILLSKTDLTMQTVEEVITSAYGEMEIAR 540
            E P+ Y  R +VLR +L ++G   SD DA+ H VRNL P F +Q+++LL+ +++  + VE+VI +A+ E E AR
Sbjct:  101 EEPRRYLTRASVLRQKLEAYGWVQSDHDANVHYVRNLLPDFNVQRSVLLTHSEVRTELVEKVILTAWAETEAAR 174
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig89386.17026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAF3_9PHAE6.730e-1446.99Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KM55_9PHAE2.590e-843.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig89386contigS-dermatodea_contig89386:2..557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size542
Cds size462
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig89386.17026.1prot_S-dermatodea_contig89386.17026.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig89386 82..557 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925373.8020484-UTR-S-dermatodea_contig89386:1..811622925373.8020484-UTR-S-dermatodea_contig89386:1..81Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig89386 2..81 -
1694079889.7239525-UTR-S-dermatodea_contig89386:1..811694079889.7239525-UTR-S-dermatodea_contig89386:1..81Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig89386 2..81 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925373.8144233-CDS-S-dermatodea_contig89386:81..4881622925373.8144233-CDS-S-dermatodea_contig89386:81..488Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89386 82..488 -
1694079889.7332413-CDS-S-dermatodea_contig89386:81..4881694079889.7332413-CDS-S-dermatodea_contig89386:81..488Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89386 82..488 -
1622925373.8251402-CDS-S-dermatodea_contig89386:502..5571622925373.8251402-CDS-S-dermatodea_contig89386:502..557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89386 503..557 -
1694079889.7495122-CDS-S-dermatodea_contig89386:502..5571694079889.7495122-CDS-S-dermatodea_contig89386:502..557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89386 503..557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig89386.17026.1

>prot_S-dermatodea_contig89386.17026.1 ID=prot_S-dermatodea_contig89386.17026.1|Name=mRNA_S-dermatodea_contig89386.17026.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=154bp
PESRPPWRCCSRGGRCCCLLLQVVLLLLVVLPLVLGLVLLRRLLPLRSET
LSALVVVEAVEPVERAVLVASDLLLPGPSAAVSTPAPPARAGGNEGVPRS
ILDLLLPCDLHLPVRARDHLLDRLHGQICFAQKDSFLYCESGGKVSHQVL
VSV*
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mRNA from alignment at S-dermatodea_contig89386:2..557-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig89386.17026.1 ID=mRNA_S-dermatodea_contig89386.17026.1|Name=mRNA_S-dermatodea_contig89386.17026.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=556bp|location=Sequence derived from alignment at S-dermatodea_contig89386:2..557- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGGAATCGCGCCCCCCGTGGCGATGCTGTTCTCGAGGCGGGCGTTGCTG
CTGCTGCTGCAGGTGGTAGTGCTGCTGCAGGTGGTGCTGCTGCTGCTGGT
GGTGCTGCCGCTGGTGCTGGGGCTGGTACTGCTGCGGCGGCTGCTGCCGC
TGCGGTCTGAAACACTCTCTGCACTCGTAGTCGTCGAGGCCGTAGAACCC
GTGGAACGTGCAGTACTTGTGGCCTCCGACCTGCTGTTGCCTGGTCCTTC
CGCCGCCGTCTCCACCCCCGCCCCCCCGGCCCGTGCCGGAGGAAACGAAG
GCGTACCCCGTTCCATTCTTGACCTCCTCCTCCCGTGCGATCTCCATCTC
CCCGTACGCGCTCGTGATCACCTCCTCGACCGTTTGCATGGTCAAATCTG
TTTTGCTCAGAAGGATAGTTTTTTGTATTGCGAAAGCGGGGGAAAGGTTT
CGCACCAAGTGCTGGTGAGCGTCTAGGTCGCTAAAGCTTGCACCGTGGGA
AACAAGGCGACTGCGAAGCACCGCGAATCTACCAAAATATGACTGGGGAG
CCTCCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig89386:2..557-

>mRNA_S-dermatodea_contig89386.17026.1 ID=mRNA_S-dermatodea_contig89386.17026.1|Name=mRNA_S-dermatodea_contig89386.17026.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at S-dermatodea_contig89386:2..557- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGGAATCGCGCCCCCCGTGGCGATGCTGTTCTCGAGGCGGGCGTTGCTG
CTGCTCCGGAATCGCGCCCCCCGTGGCGATGCTGTTCTCGAGGCGGGCGT
TGCTGCTGCTTGCTGCTGCAGGTGGTGCTGCTGCTGCTGGTGGTGCTGCC
GCTGGTGCTGGGGCTGGTACTGCTGCGGCGGCTGCTGCCGCTGCGGTCTG
AAACACTCTCTGCACTCGTAGTCGTCGAGGCCGTAGAACCCGTGGAACGT
GCAGTACTTGTGGCCTCCGACCTGCTGTTGCCTGGTCCTTCCGCCGCCGT
CTCCACCCCCGCCCCCCCGGCCCGTGCCGGAGGAAACGAAGGCGTACCCC
GTTCCATTCTTGACCTCCTCCTCCCGTGCGATCTCCATCTCCCCGTACGC
GCTCGTGATCACCTCCTCGACCGTTTGCATGGTCAAATCTGTTTTGCTCA
GAAGGATAGTTTTTTGTATTGCGAAAGCGGGGGAAAGGTTTCGCACCAAG
TGCTGGTGAGCGTCTAGTGCTGCTGCAGGTGGTGCTGCTGCTGCTGGTGG
TGCTGCCGCTGGTGCTGGGGCTGGTACTGCTGCGGCGGCTGCTGCCGCTG
CGGTCTGAAACACTCTCTGCACTCGTAGTCGTCGAGGCCGTAGAACCCGT
GGAACGTGCAGTACTTGTGGCCTCCGACCTGCTGTTGCCTGGTCCTTCCG
CCGCCGTCTCCACCCCCGCCCCCCCGGCCCGTGCCGGAGGAAACGAAGGC
GTACCCCGTTCCATTCTTGACCTCCTCCTCCCGTGCGATCTCCATCTCCC
CGTACGCGCTCGTGATCACCTCCTCGACCGTTTGCATGGTCAAATCTGTT
TTGCTCAGAAGGATAGTTTTTTGTATTGCGAAAGCGGGGGAAAGGTTTCG
CACCAAGTGCTGGTGAGCGTCTAG
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