mRNA_S-dermatodea_contig8933.17024.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8933.17024.1
Unique NamemRNA_S-dermatodea_contig8933.17024.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8933.17024.1 vs. uniprot
Match: A0A6H5KQJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ0_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 3.010e-39
Identity = 67/96 (69.79%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    4 FDDPEAFAESIRAVRSDFNPADWCLVGYKDVGELRIVDAGKGGLDALLLAAEPYGVNYGLLRVSEKFDLVCHEAYCFVTWMPEIVPAFVKARVSTH 291
            F++PE FA +++ VRSD + ADWCL+GYK+   LR+V  GKGGL  LL AAEPYGVNYGLLRVSEKFD V HEAYCF++W+PE +PAFVKARVSTH
Sbjct:  209 FEEPEVFARAVKDVRSDLSFADWCLLGYKNETVLRMVGTGKGGLQCLLDAAEPYGVNYGLLRVSEKFDGVFHEAYCFISWIPENIPAFVKARVSTH 304
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BLAST of mRNA_S-dermatodea_contig8933.17024.1 vs. uniprot
Match: D8LSR6_ECTSI (Actin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSR6_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 5.650e-39
Identity = 65/96 (67.71%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:    4 FDDPEAFAESIRAVRSDFNPADWCLVGYKDVGELRIVDAGKGGLDALLLAAEPYGVNYGLLRVSEKFDLVCHEAYCFVTWMPEIVPAFVKARVSTH 291
            F++P+AF  +++ VRSD + ADWCL+GYK+   LR+V  GKGGL  LL AAEP GVNYGLLRVSEKFD V HEAYCF++W+PE +PAFVKARVSTH
Sbjct:  209 FEEPKAFGRAVKDVRSDMSFADWCLLGYKNETVLRMVGTGKGGLQCLLDAAEPSGVNYGLLRVSEKFDGVFHEAYCFISWIPENIPAFVKARVSTH 304
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8933.17024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQJ0_9PHAE3.010e-3969.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSR6_ECTSI5.650e-3967.71Actin binding protein n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8933contigS-dermatodea_contig8933:7324..8287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue2.7e-32
Seed eggNOG ortholog2880.D8LSR6
EggNOG free text desc.Cofilin/tropomyosin-type actin-binding protein
EggNOG OGs2BN41@1,2S1NH@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925373.7212663-CDS-S-dermatodea_contig8933:7323..75121622925373.7212663-CDS-S-dermatodea_contig8933:7323..7512Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8933 7324..7512 +
1694079889.6744401-CDS-S-dermatodea_contig8933:7323..75121694079889.6744401-CDS-S-dermatodea_contig8933:7323..7512Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8933 7324..7512 +
1622925373.7323909-CDS-S-dermatodea_contig8933:8185..82871622925373.7323909-CDS-S-dermatodea_contig8933:8185..8287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8933 8186..8287 +
1694079889.686631-CDS-S-dermatodea_contig8933:8185..82871694079889.686631-CDS-S-dermatodea_contig8933:8185..8287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8933 8186..8287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8933.17024.1prot_S-dermatodea_contig8933.17024.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8933 7324..8287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8933.17024.1

>prot_S-dermatodea_contig8933.17024.1 ID=prot_S-dermatodea_contig8933.17024.1|Name=mRNA_S-dermatodea_contig8933.17024.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=97bp
MFDDPEAFAESIRAVRSDFNPADWCLVGYKDVGELRIVDAGKGGLDALLL
AAEPYGVNYGLLRVSEKFDLVCHEAYCFVTWMPEIVPAFVKARVSTH
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mRNA from alignment at S-dermatodea_contig8933:7324..8287+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8933.17024.1 ID=mRNA_S-dermatodea_contig8933.17024.1|Name=mRNA_S-dermatodea_contig8933.17024.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=964bp|location=Sequence derived from alignment at S-dermatodea_contig8933:7324..8287+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCGACGACCCCGAGGCATTCGCGGAGTCCATCAGAGCCGTACGCTC
TGACTTCAACCCGGCAGACTGGTGCCTCGTCGGCTACAAGGACGTGGGAG
AGCTGAGGATTGTCGACGCCGGCAAGGGCGGTCTGGACGCTCTGCTACTT
GCAGCGGAGCCGTACGGCGTGAACTACGGCCTTCTCAGGGTGAGATATTC
CCCGCGTTTCGATATCTTCGCGATTTAAGTGTTACGTTAAATTGTTAAGT
TTGCTGTGTCCAGCGCAGTTTATGTGCGGGGGCGGGGGCGGGGGCGGGGG
GGGCGTGTAGCGGGAAAAGTTGTTTGTTCATGTGTAGGTCTAGGTCTTCT
ATTTCGCGTGTCGTGTATGCAGAGCGGTAGTTGTCTCCTCGTCCCGGTCG
GCCATTTTCGCAAGAATCGCGCTGGTAGTCGAGCACACAAACGGCTGCTC
TTCGAACCACATTGCTGCGGCCCTTTTAATCTCTCGTGTGAGCGATGCCC
CGAAGAGCTCGGCGATTCAGCGGCCTCGAAAGTAAATTTACCAATCCTGC
GCACGCACACGCACCGCCACAAACCTTTCATCTTGCGTGCGGACTCGAGG
AAATTCGCTCTGCGCCCGACGCGAGTTCCTCCTCTCGGGCTCACGGCCTG
CCCTGGGCGCACACACGACCATCGAACGCTGCAGTGCCTTGCCGGAATCC
TTGTTCCGAAAGAGCTATGGGTCGTCCGGTCCGCAGGTTGCCCTTCCGTC
CGTGGTGCGCTCCATCCGCCGTTTCAGCGGCGGTGCGCTCGGTGGTACAT
ATGCTTTCGATCGTTTCTCCTATAATAGCTGATCGCCCCTCCCTCCTCCG
GGTCCGCCCCAGGTGTCCGAGAAATTCGACCTCGTGTGCCACGAGGCCTA
CTGCTTTGTGACATGGATGCCGGAAATCGTGCCCGCGTTCGTCAAGGCCA
GGGTCAGCACCCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8933:7324..8287+

>mRNA_S-dermatodea_contig8933.17024.1 ID=mRNA_S-dermatodea_contig8933.17024.1|Name=mRNA_S-dermatodea_contig8933.17024.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at S-dermatodea_contig8933:7324..8287+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCGACGACCCCGAGGCATTCGCGGAGTCCATCAGAGCCGTACGCTC
TGACTTCAACCCGGCAGACTGGTGCCTCGTCGGCTACAAGGACGTGGGAG
AGCTGAGGATTGTCGACGCCGGCAAGGGCGGTCTGGACGCTCTGCTACTT
GCAGCGGAGCCGTACGGCGTGAACTACGGCCTTCTCAGGATGTTCGACGA
CCCCGAGGCATTCGCGGAGTCCATCAGAGCCGTACGCTCTGACTTCAACC
CGGCAGACTGGTGCCTCGTCGGCTACAAGGACGTGGGAGAGCTGAGGATT
GTCGACGCCGGCAAGGGCGGTCTGGACGCTCTGCTACTTGCAGCGGAGCC
GTACGGCGTGAACTACGGCCTTCTCAGGGTGTCCGAGAAATTCGACCTCG
TGTGCCACGAGGCCTACTGCTTTGTGACATGGATGCCGGAAATCGTGCCC
GCGTTCGTCAAGGCCAGGGTCAGCACCCACGTGTCCGAGAAATTCGACCT
CGTGTGCCACGAGGCCTACTGCTTTGTGACATGGATGCCGGAAATCGTGC
CCGCGTTCGTCAAGGCCAGGGTCAGCACCCAC
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