mRNA_S-dermatodea_contig8933.17023.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8933.17023.1
Unique NamemRNA_S-dermatodea_contig8933.17023.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8933.17023.1 vs. uniprot
Match: A0A6H5KQJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ0_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 4.520e-58
Identity = 88/111 (79.28%), Postives = 99/111 (89.19%), Query Frame = 1
Query:    1 VRSDDVDTDWVLCGFKGGDNIRFLGHGTGGIESLKLNIVKWDVCYGLVRCTHTLEQAGYVQTDFVKFVWVYWRPDNIPVLRKMQIGVNEGEMKQLFAPYHAELQACSMEEL 333
            VRSD    DWVLCGF GG++IR +G G GG+E+LK +IVKWDVCYGLVRC+HTLEQAGYVQT FVKFVWVYWRPDNIPV+RKM+IGVNEGEMK LFAPYHAELQAC++ EL
Sbjct:   26 VRSDTAREDWVLCGFDGGEDIRLIGTGVGGVEALKASIVKWDVCYGLVRCSHTLEQAGYVQTGFVKFVWVYWRPDNIPVMRKMKIGVNEGEMKSLFAPYHAELQACALHEL 136          
BLAST of mRNA_S-dermatodea_contig8933.17023.1 vs. uniprot
Match: D8LSR6_ECTSI (Actin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSR6_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.340e-56
Identity = 84/111 (75.68%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    1 VRSDDVDTDWVLCGFKGGDNIRFLGHGTGGIESLKLNIVKWDVCYGLVRCTHTLEQAGYVQTDFVKFVWVYWRPDNIPVLRKMQIGVNEGEMKQLFAPYHAELQACSMEEL 333
            VRSD    DWVLCGF GG +IR  G G GG+E+LK +IV+WDVCYGLVRC++TLEQAG VQT FVKFVWVYWRPDNIPV+RKM+IGVNEGEMK +FAPYHAELQAC++ EL
Sbjct:   26 VRSDTAREDWVLCGFDGGGDIRLFGTGVGGVEALKASIVEWDVCYGLVRCSYTLEQAGDVQTGFVKFVWVYWRPDNIPVIRKMKIGVNEGEMKSVFAPYHAELQACALHEL 136          
BLAST of mRNA_S-dermatodea_contig8933.17023.1 vs. uniprot
Match: A0A6S7ZCW5_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S7ZCW5_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 7.760e-22
Identity = 46/113 (40.71%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    1 VRSDDVDTDWVLCGF--KGGDNIRFLGHGTGGIESLKLNIVKWDVCYGLVRCTHTLEQAGYVQTDFVKFVWVYWRPDNIPVLRKMQIGVNEGEMKQLFAPYHAELQACSMEEL 333
            VR+D  DT++V+ G+     + +  LG G+ GIE +K      DVCY L+R  +T E+AG +++D  +F++VY RP++IP+ RKM+IG  EG++K+LF P+    +  S++EL
Sbjct:   16 VRNDSSDTNFVVVGYDENNPNALILLGSGSSGIEGIKATCKADDVCYSLLRVNYTFEKAGVIKSDASRFIFVYLRPESIPLQRKMKIGTAEGQVKKLFTPFMKNFEISSLDEL 128          
BLAST of mRNA_S-dermatodea_contig8933.17023.1 vs. uniprot
Match: A0A2R5G251_9STRA (Drebrin-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G251_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.980e-21
Identity = 43/111 (38.74%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    1 VRSDDVDTDWVLCGFKGGDNIRFLGHGTGGIESLKLNIVKWDVCYGLVRCTHTLEQAGYVQTDFVKFVWVYWRPDNIPVLRKMQIGVNEGEMKQLFAPYHAELQACSMEEL 333
            VRSD    +++L G++  D ++ +  G+ G+  LK  +   DV YGL+RC   +E+ G V  D  KF++V WRPD IP+ RKM+IG  +G++K+LF+ YH ++     +E+
Sbjct:   16 VRSDAAPENFMLAGYEDDDTLKVIACGSEGVAGLKAALPSSDVAYGLLRCQFMVEKVGQVAADTTKFIFVLWRPDAIPLKRKMKIGRYDGQVKKLFSSYHTDMDINDEDEI 126          
BLAST of mRNA_S-dermatodea_contig8933.17023.1 vs. uniprot
Match: A0A8J4PWL5_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PWL5_9MYCE)

HSP 1 Score: 74.3 bits (181), Expect = 3.150e-13
Identity = 39/103 (37.86%), Postives = 57/103 (55.34%), Query Frame = 1
Query:    1 VRSDDVDTDWVLCGFKGGDNIRFLGHGTGGIESLKLNIVKWDVCYGLVRCTHTLEQAGYVQTDFVKFVWVYWRPDNIPVLRKMQIGVNEGEMKQLFAPYHAEL 309
            VRSD  DT+W L G+K    +  LG G GG + L  ++    V YGLVR     + +  V+  FVKFV      ++I  + + ++G + G +K LFAPYH +L
Sbjct:  368 VRSDSSDTNWALVGYKNDTTLTLLGSGNGGADELAQHLNSKIVAYGLVREVERFDLSDTVKFAFVKFVG-----EDIARMFRAKLGTHSGAIKNLFAPYHVDL 465          
BLAST of mRNA_S-dermatodea_contig8933.17023.1 vs. uniprot
Match: UPI000644FF2F (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644FF2F)

HSP 1 Score: 65.5 bits (158), Expect = 4.040e-10
Identity = 33/112 (29.46%), Postives = 62/112 (55.36%), Query Frame = 1
Query:    1 VRSDDVDTDWVLCGFKGGDN-IRFLGHGTGGIESLKLNIVKWDVCYGLVRCTHTLEQAGYVQTDFVKFVWVYWRPDNIPVLRKMQIGVNEGEMKQLFAPYHAELQACSMEEL 333
            VRSD   T+W L G+K  +  +  +  G G  + L  ++    V YGL+R      +  +  ++  +FVWV +  ++IP + + ++G + G +K +F+PYH ++QA +  E+
Sbjct:  363 VRSDSTPTNWTLIGYKPNNTTLTVIASGNGDADELASHLQSNIVAYGLIRV-----RTQFDLSEITQFVWVNFVGEDIPRMFRAKLGTHSGIVKDVFSPYHVDIQANTPSEV 469          
BLAST of mRNA_S-dermatodea_contig8933.17023.1 vs. uniprot
Match: A0A0B6YA28_9EUPU (Uncharacterized protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YA28_9EUPU)

HSP 1 Score: 63.9 bits (154), Expect = 1.120e-9
Identity = 36/112 (32.14%), Postives = 61/112 (54.46%), Query Frame = 1
Query:    1 VRSDDVDTDWVLCG-FKGGDNIRFLGHGTGGIESLKLNIVKWDVCYGLVRCTHTLEQAGYVQTDFVKFVWVYWRPDNIPVLRKMQIGVNEGEMKQLFAPYHAELQACSMEEL 333
            VRSD  D  +V+CG F G  N+  + +    I  +   +   +  YGLVR      +  +  +  +KFV+++W  +N+PV +K + GV  G ++  F+PYH  ++A S E+L
Sbjct:   20 VRSDASDISYVICGHFDGNPNLIGVLYTGSDISEIGSKMDPTEAMYGLVRY-----ETKFDMSTTIKFVYIHWIGENLPVGKKGRYGVIHGSIESRFSPYHLLVEASSPEDL 126          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8933.17023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KQJ0_9PHAE4.520e-5879.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSR6_ECTSI1.340e-5675.68Actin binding protein n=1 Tax=Ectocarpus siliculos... [more]
A0A6S7ZCW5_9STRA7.760e-2240.71Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A2R5G251_9STRA1.980e-2138.74Drebrin-like protein n=1 Tax=Hondaea fermentalgian... [more]
A0A8J4PWL5_9MYCE3.150e-1337.86Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI000644FF2F4.040e-1029.46hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A0B6YA28_9EUPU1.120e-932.14Uncharacterized protein n=1 Tax=Arion vulgaris Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8933contigS-dermatodea_contig8933:2456..3285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.0
Seed ortholog evalue7.6e-47
Seed eggNOG ortholog2880.D8LSR6
EggNOG free text desc.Cofilin/tropomyosin-type actin-binding protein
EggNOG OGs2BN41@1,2S1NH@2759
Ec32 ortholog descriptionADF-H/Gelsolin-like domain
Ec32 orthologEc-15_002890.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925373.6656265-CDS-S-dermatodea_contig8933:2455..25511622925373.6656265-CDS-S-dermatodea_contig8933:2455..2551Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8933 2456..2551 +
1694079889.649653-CDS-S-dermatodea_contig8933:2455..25511694079889.649653-CDS-S-dermatodea_contig8933:2455..2551Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8933 2456..2551 +
1622925373.6843898-CDS-S-dermatodea_contig8933:3048..32851622925373.6843898-CDS-S-dermatodea_contig8933:3048..3285Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8933 3049..3285 +
1694079889.662904-CDS-S-dermatodea_contig8933:3048..32851694079889.662904-CDS-S-dermatodea_contig8933:3048..3285Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8933 3049..3285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8933.17023.1prot_S-dermatodea_contig8933.17023.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8933 2456..3285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8933.17023.1

>prot_S-dermatodea_contig8933.17023.1 ID=prot_S-dermatodea_contig8933.17023.1|Name=mRNA_S-dermatodea_contig8933.17023.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
VRSDDVDTDWVLCGFKGGDNIRFLGHGTGGIESLKLNIVKWDVCYGLVRC
THTLEQAGYVQTDFVKFVWVYWRPDNIPVLRKMQIGVNEGEMKQLFAPYH
AELQACSMEEL
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mRNA from alignment at S-dermatodea_contig8933:2456..3285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8933.17023.1 ID=mRNA_S-dermatodea_contig8933.17023.1|Name=mRNA_S-dermatodea_contig8933.17023.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=830bp|location=Sequence derived from alignment at S-dermatodea_contig8933:2456..3285+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCCGAAGCGACGATGTCGATACCGACTGGGTACTCTGCGGGTTCAAGGG AGGCGACAACATCAGGTTCCTCGGTCATGGTACCGGGGGCATCGAGGTGA GCGGGCGCTGCGCCGGCGGTCGCAGTTTGCAGCGCGTGGCACCCTTTACA GCGTAGCCCGTCAAGCGTCGTGGAATACTCTGGGTGGTTGGCGCAGGCGG GAGCGTTGCCTGCACCGCAATTTTACGTATCGTGTCTTCATTGTCGCCGT ATTTCGGTTCCGGGCATGTCGGCGATGTAGCTCCGTCGACGAAAGACAAA GGCGGCGCAATTTGAACAACCCGACGTAGAGATCTGGACGTGCCGGCCTC GTATAGGGCCGACTACCTCTCACGTCGCTATCTCTCTGTGGCGTAGTAGC CATGGGCGCCTCCCGCACGAAATGGCGATATCATTTACGTACGCCGAATG GACGCTACAAACCTCATGTGTTGTGCGTGTTCCGCACCACCAGCGCACCA CTCGATCGATCGATGATTGTTTTATGCTTGAAATGAAAACGTCTCCATGC CCACGCACGCGTGCGCACCGAACCGGGAAACACACACACGCAGTCTCTGA AGCTCAACATCGTGAAGTGGGACGTGTGCTACGGCCTCGTGCGCTGTACG CACACGCTGGAGCAGGCGGGGTACGTACAGACGGACTTCGTGAAGTTTGT CTGGGTCTACTGGAGGCCGGACAACATCCCCGTCTTGCGCAAGATGCAGA TTGGCGTGAACGAGGGCGAGATGAAGCAGTTGTTCGCCCCGTACCACGCC GAGCTGCAGGCTTGCTCAATGGAAGAGCTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8933:2456..3285+

>mRNA_S-dermatodea_contig8933.17023.1 ID=mRNA_S-dermatodea_contig8933.17023.1|Name=mRNA_S-dermatodea_contig8933.17023.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig8933:2456..3285+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCCGAAGCGACGATGTCGATACCGACTGGGTACTCTGCGGGTTCAAGGG
AGGCGACAACATCAGGTTCCTCGGTCATGGTACCGGGGGCATCGAGGTCC
GAAGCGACGATGTCGATACCGACTGGGTACTCTGCGGGTTCAAGGGAGGC
GACAACATCAGGTTCCTCGGTCATGGTACCGGGGGCATCGAGTCTCTGAA
GCTCAACATCGTGAAGTGGGACGTGTGCTACGGCCTCGTGCGCTGTACGC
ACACGCTGGAGCAGGCGGGGTACGTACAGACGGACTTCGTGAAGTTTGTC
TGGGTCTACTGGAGGCCGGACAACATCCCCGTCTTGCGCAAGATGCAGAT
TGGCGTGAACGAGGGCGAGATGAAGCAGTTGTTCGCCCCGTACCACGCCG
AGCTGCAGGCTTGCTCAATGGAAGAGCTCTCTCTGAAGCTCAACATCGTG
AAGTGGGACGTGTGCTACGGCCTCGTGCGCTGTACGCACACGCTGGAGCA
GGCGGGGTACGTACAGACGGACTTCGTGAAGTTTGTCTGGGTCTACTGGA
GGCCGGACAACATCCCCGTCTTGCGCAAGATGCAGATTGGCGTGAACGAG
GGCGAGATGAAGCAGTTGTTCGCCCCGTACCACGCCGAGCTGCAGGCTTG
CTCAATGGAAGAGCTC
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