mRNA_S-dermatodea_contig8931.17022.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8931.17022.1
Unique NamemRNA_S-dermatodea_contig8931.17022.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8931.17022.1 vs. uniprot
Match: A0A6H5KT12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT12_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 7.160e-34
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:   55 MNKTYLRYELSETFGLVASPQSNAIYDSTGNLAISAALHDVAVWNLRQCSLVRLLSPEGESA-SKGQVTS 261
            MNKTYLRYELSETFG+VASPQSN +YDSTGNLAISAALH+VAVWNLRQCSLVRLLSPEGESA S+ QVTS
Sbjct:    1 MNKTYLRYELSETFGVVASPQSNVVYDSTGNLAISAALHEVAVWNLRQCSLVRLLSPEGESAASRAQVTS 70
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BLAST of mRNA_S-dermatodea_contig8931.17022.1 vs. uniprot
Match: D8LS39_ECTSI (Utp12 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS39_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 7.700e-32
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:   55 MNKTYLRYELSETFGLVASPQSNAIYDSTGNLAISAALHDVAVWNLRQCSLVRLLSPEGESA-SKGQVTS 261
            MNKTYLRYELSETFG+VASPQSN +YDSTGNLAISAALHDVAVWNLRQCSLVRLLSPEGESA S+ QVTS
Sbjct:    1 MNKTYLRYELSETFGVVASPQSNVVYDSTGNLAISAALHDVAVWNLRQCSLVRLLSPEGESAASRAQVTS 70
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BLAST of mRNA_S-dermatodea_contig8931.17022.1 vs. uniprot
Match: A0A835Z9P3_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.330e-20
Identity = 45/68 (66.18%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:   61 KTYLRYELSETFGLVASPQSNAIYDSTGNLAISAALHDVAVWNLRQCSLVRLLSPEGESAS--KGQVT 258
            KTYLRY L +TFG++AS QSNA++D TGNLAI+AAL +VAVWNLRQ +L+R+L PEG+ A+  KGQV+
Sbjct:    2 KTYLRYVLHDTFGVIASTQSNAVFDKTGNLAITAALQEVAVWNLRQGTLLRMLKPEGDEATIAKGQVS 69
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BLAST of mRNA_S-dermatodea_contig8931.17022.1 vs. uniprot
Match: A0A484DUT9_BRELC (Utp12 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUT9_BRELC)

HSP 1 Score: 73.6 bits (179), Expect = 2.520e-13
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   55 MNKTYLRYELSETFGLVASPQSNAIYDSTGNLAISAALHDVAVWNLRQCSLVR-LLSPEGESASKGQVT 258
            M K YLRYE + +FG++AS + N IYDS+G LAIS AL DVAVWN+RQ + VR LL+PE  S   GQVT
Sbjct:    1 MVKAYLRYERACSFGVIASVEGNVIYDSSGRLAISPALQDVAVWNIRQGNKVRELLAPETGS---GQVT 66
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BLAST of mRNA_S-dermatodea_contig8931.17022.1 vs. uniprot
Match: A0A0P1AK11_PLAHL (WD40-repeat-containing subunit of the 18S rRNA processing complex n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AK11_PLAHL)

HSP 1 Score: 73.2 bits (178), Expect = 3.440e-13
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   55 MNKTYLRYELSETFGLVASPQSNAIYDSTGNLAISAALHDVAVWNLRQCSLVR-LLSPEGESASKGQVT 258
            M K+YLRYE + +FG++AS + N IYDS+G LAIS AL DVAVWN+RQ + VR LL+PE   +  GQ+T
Sbjct:    1 MVKSYLRYERACSFGVIASVEGNVIYDSSGRLAISPALQDVAVWNIRQGNKVRDLLAPE---SGGGQIT 66
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BLAST of mRNA_S-dermatodea_contig8931.17022.1 vs. uniprot
Match: A0A3R7HXA8_9STRA (FYVE-type domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HXA8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.770e-13
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   55 MNKTYLRYELSETFGLVASPQSNAIYDSTGNLAISAALHDVAVWNLRQCSLVR-LLSPEGESASKGQVT 258
            M K+YLRYE S +FG++AS + N IYDSTG  AI+ AL DVAVWN+RQ + VR LL+PE   +  GQVT
Sbjct:  687 MVKSYLRYERSCSFGVIASLEGNVIYDSTGRFAIAPALQDVAVWNVRQGNKVRDLLAPE---SGGGQVT 752
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BLAST of mRNA_S-dermatodea_contig8931.17022.1 vs. uniprot
Match: A0A2P6U020_CHLSO (WD repeat-containing 3 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U020_CHLSO)

HSP 1 Score: 72.0 bits (175), Expect = 8.760e-13
Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:   55 MNKTYLRYELSETFGLVASPQSNAIYDSTGNLAISAALHDVAVWNLRQCSLVRLLSPEGESASK--GQVT 258
            M K YLRYEL+ ++G++ASP SNA++D +G   ++ AL +VAVWNL+Q +LV+ LSP    + K  G+VT
Sbjct:    1 MVKAYLRYELAGSWGVIASPSSNAVFDRSGRHLLTGALENVAVWNLKQAALVKTLSPPISQSGKVAGEVT 70
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BLAST of mRNA_S-dermatodea_contig8931.17022.1 vs. uniprot
Match: A0A6U0TFN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0TFN6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.040e-12
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   40 SPCSEMNKTYLRYELSETFGLVASPQSNAIYDSTGNLAISAALHDVAVWNLRQCSLVRLLSPEGES 237
            +P   MN+TYLRY   ++FG++ +P+ N+I   + +LAI+ AL D AVWNL+Q SLV+ L PEG S
Sbjct:   19 APPKSMNRTYLRYVPQQSFGVICTPRGNSILGESEDLAITPALRDAAVWNLKQGSLVKRLRPEGGS 84
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BLAST of mRNA_S-dermatodea_contig8931.17022.1 vs. uniprot
Match: A0A425BY92_9STRA (Utp12 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A425BY92_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.160e-12
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   55 MNKTYLRYELSETFGLVASPQSNAIYDSTGNLAISAALHDVAVWNLRQCSLVR-LLSPEGESASKGQVT 258
            M K+YLRYE S +FG++AS + N IYD++G  AI+ AL DVAVWN+RQ + VR LL+PE   +  GQVT
Sbjct:    1 MVKSYLRYERSCSFGVIASIEGNVIYDASGRFAIAPALQDVAVWNVRQGNKVRDLLAPE---SGGGQVT 66
[Close]
BLAST of mRNA_S-dermatodea_contig8931.17022.1 vs. uniprot
Match: A0A8J9WMX0_9CHLO (WD repeat-containing protein 3 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WMX0_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 5.670e-12
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:   55 MNKTYLRYELSETFGLVASPQSNAIYDSTGNLAISAALHDVAVWNLRQCSLVRLLSP--EGESASKGQVT 258
            M K YLRYELS TFG+V S  S  ++D+TG L ++AAL +VAVWNLRQ +LVR+L P    E  +  +VT
Sbjct:    1 MVKAYLRYELSSTFGVVTS-NSALVHDTTGKLVVTAALENVAVWNLRQGTLVRMLVPPTSAEGRAPAEVT 69
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8931.17022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT12_9PHAE7.160e-3490.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS39_ECTSI7.700e-3291.43Utp12 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A835Z9P3_9STRA4.330e-2066.18WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A484DUT9_BRELC2.520e-1360.87Utp12 domain-containing protein n=1 Tax=Bremia lac... [more]
A0A0P1AK11_PLAHL3.440e-1357.97WD40-repeat-containing subunit of the 18S rRNA pro... [more]
A0A3R7HXA8_9STRA4.770e-1359.42FYVE-type domain-containing protein n=4 Tax=Phytop... [more]
A0A2P6U020_CHLSO8.760e-1350.00WD repeat-containing 3 n=1 Tax=Chlorella sorokinia... [more]
A0A6U0TFN6_9STRA3.040e-1250.00Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A425BY92_9STRA4.160e-1256.52Utp12 domain-containing protein n=2 Tax=Peronospor... [more]
A0A8J9WMX0_9CHLO5.670e-1254.29WD repeat-containing protein 3 n=1 Tax=Coccomyxa s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8931contigS-dermatodea_contig8931:4409..5651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue6.8e-27
Seed eggNOG ortholog2880.D8LS39
Preferred nameWDR3
KEGG koko:K14556
KEGG Pathwayko03008,map03008
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.snoRNA binding
EggNOG OGsKOG0306@1,KOG0306@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSmall-subunit processome, Utp12
Ec32 orthologEc-12_004910.1
Exons2
Model size263
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925373.6114805-CDS-S-dermatodea_contig8931:4409..44631622925373.6114805-CDS-S-dermatodea_contig8931:4409..4463Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8931 4410..4463 -
1694079889.6252701-CDS-S-dermatodea_contig8931:4409..44631694079889.6252701-CDS-S-dermatodea_contig8931:4409..4463Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8931 4410..4463 -
1622925373.6225808-CDS-S-dermatodea_contig8931:5444..56511622925373.6225808-CDS-S-dermatodea_contig8931:5444..5651Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8931 5445..5651 -
1694079889.6381152-CDS-S-dermatodea_contig8931:5444..56511694079889.6381152-CDS-S-dermatodea_contig8931:5444..5651Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8931 5445..5651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8931.17022.1prot_S-dermatodea_contig8931.17022.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8931 4410..5651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8931.17022.1

>prot_S-dermatodea_contig8931.17022.1 ID=prot_S-dermatodea_contig8931.17022.1|Name=mRNA_S-dermatodea_contig8931.17022.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=87bp
AVLELCLVCQRRYSPCSEMNKTYLRYELSETFGLVASPQSNAIYDSTGNL
AISAALHDVAVWNLRQCSLVRLLSPEGESASKGQVTS
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mRNA from alignment at S-dermatodea_contig8931:4409..5651-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8931.17022.1 ID=mRNA_S-dermatodea_contig8931.17022.1|Name=mRNA_S-dermatodea_contig8931.17022.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1243bp|location=Sequence derived from alignment at S-dermatodea_contig8931:4409..5651- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGTCCTCGAGCTCTGCCTTGTCTGCCAGAGGCGCTACAGCCCATGTAG
CGAGATGAACAAGACATATCTCAGGTACGAGCTCAGTGAGACGTTTGGCC
TGGTCGCATCGCCTCAGAGCAATGCCATCTACGACTCCACCGGCAACCTT
GCCATCTCGGCTGCTCTGCACGACGTTGCGGTGTGGAACCTGCGGCAGTG
CTCGCTGGTGAGAGAAGGGAGAGGGGGGCAGGGACCTTTGATTGCTGCGC
CCGAGCTGTTTAGTGTTAGTGTCGTTGGTGGCTTCTCTGGTGGTTTGTGC
CTGCCCGTGCGCAGAGGTGGAGGGCTCCCGGCTTTGTTAGCGAGAGACTG
GTTGGGTTTTTGAGGTCGTGGGCTGTTGTTTCGGTGTTGTTTGCGGCCAT
GCGTGTTGCAAGCAGAGGCCGTGGCCCCGTGTGTGTAGCCTGCTTTTGGC
GACGCGAAATGAGGAGCAGGCCCAGCCAACCACGTCTTTGCATCCGCGAT
GTTTGGTCTCGCGTTCTTGCGGCCTATGTGTATGCACTCGCCGGAGTACG
GCTAGGGTTTGGGAGCCATAGTTAGGCTGCTCTGGTATCACAGCCACTGC
TTTTCCTCTCGTGTATCCTATCCTATCAGAATCCCGCTCTCTATACTTGT
ACAAGCACAGCCATCGCCGCAACCACCAGCCTTCGCTGACCCCTGTTTTG
TCGGCAGTCGTGGCTCTCATTAACGACGTGACCTCCATCCTTATGCAGCA
CACCGCCACCCTCTCCAGTGTCATACTACAATAGGTGTAGTTCTTGCAGT
TTAGTTCGCTCGCTCAAGCAGTTGATGCTTTCAGCTTTTTGCGAAGCGCC
GCTTTTTGGGCACATATCATACCATACTGAAGAATCCAATTCCGGTCGTT
GGAGGCCTAAAACGCGTGGTCCGTCCAGACTCCCCTCAACAGCAGAGTAC
ACATGATAGCAATACACGCACACCCGCTTTTGGAACGCGCTATTTGTACC
TTACCTTTGCGCGTCGCCGTCTCCACCAACCACGCGCCGCCGCCGCCACC
GCCGCCACGATTTTTTCACTCGCGATTCAACCTACCCAGCGACCCAAATA
GCCCCTCACGAAACCAGCACGAACAAGCAGTCACACAGCAGTCATGATAA
CACACACATACACACGCACGGACATGAACATTTCGCAGGTTCGGCTCCTG
AGCCCGGAGGGCGAGTCGGCCAGCAAGGGCCAGGTGACGAGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8931:4409..5651-

>mRNA_S-dermatodea_contig8931.17022.1 ID=mRNA_S-dermatodea_contig8931.17022.1|Name=mRNA_S-dermatodea_contig8931.17022.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at S-dermatodea_contig8931:4409..5651- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGTCCTCGAGCTCTGCCTTGTCTGCCAGAGGCGCTACAGCCCATGTAG
CGAGATGAACAAGACATATCTCAGGTACGAGCTCAGTGAGACGTTTGGCC
TGGTCGCATCGCCTCAGAGCAATGCCATCTACGACTCCACCGGCAACCTT
GCCATCTCGGCTGCTCTGCACGACGTTGCGGTGTGGAACCTGCGGCAGTG
CTCGCTGGCTGTCCTCGAGCTCTGCCTTGTCTGCCAGAGGCGCTACAGCC
CATGTAGCGAGATGAACAAGACATATCTCAGGTACGAGCTCAGTGAGACG
TTTGGCCTGGTCGCATCGCCTCAGAGCAATGCCATCTACGACTCCACCGG
CAACCTTGCCATCTCGGCTGCTCTGCACGACGTTGCGGTGTGGAACCTGC
GGCAGTGCTCGCTGGTTCGGCTCCTGAGCCCGGAGGGCGAGTCGGCCAGC
AAGGGCCAGGTGACGAGCGTTCGGCTCCTGAGCCCGGAGGGCGAGTCGGC
CAGCAAGGGCCAGGTGACGAGC
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