mRNA_S-dermatodea_contig89243.17015.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig89243.17015.1
Unique NamemRNA_S-dermatodea_contig89243.17015.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig89243.17015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig89243contigS-dermatodea_contig89243:139..466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size328
Cds size306
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925373.1994429-UTR-S-dermatodea_contig89243:138..1601622925373.1994429-UTR-S-dermatodea_contig89243:138..160Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig89243 139..160 +
1694079889.348942-UTR-S-dermatodea_contig89243:138..1601694079889.348942-UTR-S-dermatodea_contig89243:138..160Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig89243 139..160 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925373.2113714-CDS-S-dermatodea_contig89243:160..4661622925373.2113714-CDS-S-dermatodea_contig89243:160..466Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89243 161..466 +
1694079889.3576505-CDS-S-dermatodea_contig89243:160..4661694079889.3576505-CDS-S-dermatodea_contig89243:160..466Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89243 161..466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig89243.17015.1prot_S-dermatodea_contig89243.17015.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig89243 161..466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig89243.17015.1

>prot_S-dermatodea_contig89243.17015.1 ID=prot_S-dermatodea_contig89243.17015.1|Name=mRNA_S-dermatodea_contig89243.17015.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
MPPPPPARPPQSRPRPPLRRRPWPLVPGIARPCPRPLRLVSGLPPLRSVL
GALGAARATGVGRRSPWGEGCRRWCPGPCRPAGLRKRLRRPRSPGASVCS
R*
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mRNA from alignment at S-dermatodea_contig89243:139..466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig89243.17015.1 ID=mRNA_S-dermatodea_contig89243.17015.1|Name=mRNA_S-dermatodea_contig89243.17015.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=328bp|location=Sequence derived from alignment at S-dermatodea_contig89243:139..466+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGTTTCGTCGTCGTCTCCGTAATGCCGCCTCCGCCGCCGGCGAGGCCGC
CCCAATCGCGTCCACGTCCACCTCTTCGGCGACGCCCTTGGCCCCTCGTC
CCGGGGATTGCACGTCCCTGTCCGCGCCCTCTACGTCTTGTGTCCGGTCT
GCCGCCGCTGCGCTCGGTTCTCGGTGCGCTCGGCGCTGCCCGAGCCACCG
GCGTCGGTCGAAGGAGTCCGTGGGGGGAAGGTTGTCGCCGATGGTGTCCG
GGTCCATGTAGGCCAGCGGGTTTACGAAAACGTCTTCGTCGTCCTCGGAG
TCCTGGTGCGTCGGTTTGTTCACGGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig89243:139..466+

>mRNA_S-dermatodea_contig89243.17015.1 ID=mRNA_S-dermatodea_contig89243.17015.1|Name=mRNA_S-dermatodea_contig89243.17015.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig89243:139..466+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGCCTCCGCCGCCGGCGAGGCCGCCCCAATCGCGTCCACGTCCACC
TCTTCGGCGACGCCCTTGGCCCCTCGTCCCGGGGATTGCACGTCCCTGTC
CGCGCCCTCTACGTCTTGTGTCCGGTCTGCCGCCGCTGCGCTCGGTTCTC
GGTGCGCTCGGCGCTGCCCGAGCCACCGGCGTCGGTCGAAGGAGTCCGTG
GGGGGAAGGTTGTCGCCGATGGTGTCCGGGTCCATGTAGGCCAGCGGGTT
TACGAAAACGTCTTCGTCGTCCTCGGAGTCCTGGTGCGTCGGTTTGTTCA
CGGTAAATGCCGCCTCCGCCGCCGGCGAGGCCGCCCCAATCGCGTCCACG
TCCACCTCTTCGGCGACGCCCTTGGCCCCTCGTCCCGGGGATTGCACGTC
CCTGTCCGCGCCCTCTACGTCTTGTGTCCGGTCTGCCGCCGCTGCGCTCG
GTTCTCGGTGCGCTCGGCGCTGCCCGAGCCACCGGCGTCGGTCGAAGGAG
TCCGTGGGGGGAAGGTTGTCGCCGATGGTGTCCGGGTCCATGTAGGCCAG
CGGGTTTACGAAAACGTCTTCGTCGTCCTCGGAGTCCTGGTGCGTCGGTT
TGTTCACGGTAA
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