mRNA_S-dermatodea_contig8912.17008.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8912.17008.1
Unique NamemRNA_S-dermatodea_contig8912.17008.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8912.17008.1 vs. uniprot
Match: A0A6H5K688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K688_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 5.400e-33
Identity = 78/123 (63.41%), Postives = 91/123 (73.98%), Query Frame = 1 
Query:   46 FRSLSGG-ERLLLAPKSSDDALLGPEFAVENSSRDTELLENLGVRRVGKGVFFREHVLPKTIG---------RNLPVEASQAAIISVLSNLQDLCAEDSSLEAAIRSSQVVTNGSGEPKLISD 384
            F S+SG  +RLLLAPK +D  LLGP FAVE SS DTELLE+LGV+RVGKG FFREHVLP             R++   ASQAA ++VLSNLQ+LCAED  LEAA+R+SQVVT+G GEP  ISD
Sbjct: 1459 FTSISGAADRLLLAPKGTDPVLLGPVFAVE-SSVDTELLESLGVQRVGKGAFFREHVLPGVAAESRAGAAGSRHVGGGASQAATVTVLSNLQELCAEDPGLEAALRASQVVTDGGGEPAQISD 1580
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BLAST of mRNA_S-dermatodea_contig8912.17008.1 vs. uniprot
Match: D8LJG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG5_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 4.940e-30
Identity = 81/151 (53.64%), Postives = 93/151 (61.59%), Query Frame = 1 
Query:   46 FRSLSGG-ERLLLAPKSSDDALLGPEFAVENSSRDTELLENLGVRRVGKGVFFREHVLP--------------KTIGRNLP-----------------------VEASQAAIISVLSNLQDLCAEDSSLEAAIRSSQVVTNGSGEPKLISD 384
            F S+SG  +RLLLAPK +D ALLGP FAVE SS DTELLE+LGV+RVGKG FFREHVLP              +  G   P                       + ASQAA I+VLSNLQ+LCAED  LEAA+R+SQVVT+G GEP  ISD
Sbjct: 2154 FTSISGAADRLLLAPKGTDPALLGPVFAVE-SSEDTELLESLGVQRVGKGAFFREHVLPGLAAESRAGAAGSRQVGGGGYPPSGDRKATPGTVGAVGSSTGEALLGASQAATITVLSNLQELCAEDPGLEAALRASQVVTDGGGEPAQISD 2303
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BLAST of mRNA_S-dermatodea_contig8912.17008.1 vs. uniprot
Match: A0A5C7HIP1_9ROSI (RING-type domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7HIP1_9ROSI)

HSP 1 Score: 55.1 bits (131), Expect = 3.510e-6
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:   70 RLLLAPKSSDDALLGPEFAVENSS-RDTELLENLGVRRVGKGVFFREHVLPKTIGRNLPVEASQAAIISVLSNLQDLCAEDSSLEAAIRSSQVVTNGSG 363
            R  L P    + LLG EF + +SS  +  LL   G+ R+GK  F+R+ V  +   R+L  +     ++SVL NL  LCAED+S    +R+ + V   SG
Sbjct:  847 RKYLPPLDVPEGLLGFEFIICSSSIEENILLRYYGIERMGKACFYRKKVFNRV--RDLQPDIRDRVMLSVLPNLPQLCAEDTSFRECLRNLEFVPTLSG 943
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8912.17008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K688_9PHAE5.400e-3363.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJG5_ECTSI4.940e-3053.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5C7HIP1_9ROSI3.510e-636.36RING-type domain-containing protein n=1 Tax=Acer y... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8912contigS-dermatodea_contig8912:6734..7387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue5e-26
Seed eggNOG ortholog2880.D8LJG5
KEGG koko:K17592
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006457,GO:0008150,GO:0009987,GO:0030424,GO:0030425,GO:0030544,GO:0031072,GO:0036477,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051087,GO:0051128,GO:0051129,GO:0065007,GO:0070628,GO:0070852,GO:0090083,GO:0090084,GO:0097447,GO:0097458,GO:0120025,GO:0120038
EggNOG free text desc.negative regulation of inclusion body assembly
EggNOG OGs28IDA@1,2QQPY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHistidine kinase-like ATPase, C-terminal domain
Ec32 orthologEc-06_009910.1
Exons2
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925372.8644588-CDS-S-dermatodea_contig8912:6733..69801622925372.8644588-CDS-S-dermatodea_contig8912:6733..6980Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8912 6734..6980 +
1694079889.159266-CDS-S-dermatodea_contig8912:6733..69801694079889.159266-CDS-S-dermatodea_contig8912:6733..6980Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8912 6734..6980 +
1622925372.8747444-CDS-S-dermatodea_contig8912:7250..73871622925372.8747444-CDS-S-dermatodea_contig8912:7250..7387Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8912 7251..7387 +
1694079889.1770995-CDS-S-dermatodea_contig8912:7250..73871694079889.1770995-CDS-S-dermatodea_contig8912:7250..7387Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8912 7251..7387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8912.17008.1prot_S-dermatodea_contig8912.17008.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8912 6734..7387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8912.17008.1

>prot_S-dermatodea_contig8912.17008.1 ID=prot_S-dermatodea_contig8912.17008.1|Name=mRNA_S-dermatodea_contig8912.17008.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=128bp
GPGAGVEHRRSAGAIFRSLSGGERLLLAPKSSDDALLGPEFAVENSSRDT
ELLENLGVRRVGKGVFFREHVLPKTIGRNLPVEASQAAIISVLSNLQDLC
AEDSSLEAAIRSSQVVTNGSGEPKLISD
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mRNA from alignment at S-dermatodea_contig8912:6734..7387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8912.17008.1 ID=mRNA_S-dermatodea_contig8912.17008.1|Name=mRNA_S-dermatodea_contig8912.17008.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig8912:6734..7387+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTCCTGGGGCTGGGGTCGAACACCGCCGGAGTGCGGGAGCGATTTTCAG
ATCGTTGTCGGGGGGCGAACGATTGTTGCTGGCACCGAAGAGCTCAGACG
ATGCCCTCCTGGGACCAGAGTTTGCGGTGGAGAACAGCTCGCGAGATACG
GAGCTGCTGGAGAATTTGGGCGTTCGAAGAGTCGGGAAAGGAGTGTTCTT
TCGAGAGCACGTGTTGCCAAAAACGATTGGACGGAACCTTCCGGTTGGTG
AGGGCAGTGCGAAGCTCGCGGGTGCGGCGGTTGATGGAGGACGAAGGGGG
CTTGTGGGTCCGAATGTTTCGCTAGCACTGTCTAGTTGGCGTGCGCCATC
GGCACTGGCCGGGGATGCAATCGCGCGTATTTCAAGGCTCGAACGACTGG
ATCAGTAGCACTCTCGCCCGCGCGGTACACCTGCGCATGCACACGTTGTG
CCCTCCGTCTGAACACCGTCAAACCCTCGCCCTCCGAACGGCGCCTCCCT
TTTTTTTCCTCTCGTAGAGGCATCCCAGGCGGCCATCATATCCGTTCTAT
CGAACCTCCAAGATCTTTGTGCCGAAGACAGCAGCCTGGAGGCGGCGATA
AGAAGTTCGCAAGTTGTGACCAATGGGAGCGGCGAACCAAAGCTAATATC
GGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8912:6734..7387+

>mRNA_S-dermatodea_contig8912.17008.1 ID=mRNA_S-dermatodea_contig8912.17008.1|Name=mRNA_S-dermatodea_contig8912.17008.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at S-dermatodea_contig8912:6734..7387+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTCCTGGGGCTGGGGTCGAACACCGCCGGAGTGCGGGAGCGATTTTCAG
ATCGTTGTCGGGGGGCGAACGATTGTTGCTGGCACCGAAGAGCTCAGACG
ATGCCCTCCTGGGACCAGAGTTTGCGGTGGAGAACAGCTCGCGAGATACG
GAGCTGCTGGAGAATTTGGGCGTTCGAAGAGTCGGGAAAGGAGTGTTCTT
TCGAGAGCACGTGTTGCCAAAAACGATTGGACGGAACCTTCCGGTTGGGT
CCTGGGGCTGGGGTCGAACACCGCCGGAGTGCGGGAGCGATTTTCAGATC
GTTGTCGGGGGGCGAACGATTGTTGCTGGCACCGAAGAGCTCAGACGATG
CCCTCCTGGGACCAGAGTTTGCGGTGGAGAACAGCTCGCGAGATACGGAG
CTGCTGGAGAATTTGGGCGTTCGAAGAGTCGGGAAAGGAGTGTTCTTTCG
AGAGCACGTGTTGCCAAAAACGATTGGACGGAACCTTCCGGTTGAGGCAT
CCCAGGCGGCCATCATATCCGTTCTATCGAACCTCCAAGATCTTTGTGCC
GAAGACAGCAGCCTGGAGGCGGCGATAAGAAGTTCGCAAGTTGTGACCAA
TGGGAGCGGCGAACCAAAGCTAATATCGGACAGGCATCCCAGGCGGCCAT
CATATCCGTTCTATCGAACCTCCAAGATCTTTGTGCCGAAGACAGCAGCC
TGGAGGCGGCGATAAGAAGTTCGCAAGTTGTGACCAATGGGAGCGGCGAA
CCAAAGCTAATATCGGAC
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