mRNA_S-dermatodea_contig89094.17005.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig89094.17005.1
Unique NamemRNA_S-dermatodea_contig89094.17005.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig89094.17005.1 vs. uniprot
Match: D7G4M7_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M7_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.260e-27
Identity = 52/64 (81.25%), Postives = 60/64 (93.75%), Query Frame = 1
Query:   10 QVPVLVIAGSADRLLPSVAEASRLEKLIPGCRSMLLEGHGHAPLFDGRVDLSEIIASDPALEGV 201
            +VPV+++AGSADRLLPSV EA RL+ LIPGCRSM+LEGHGHAPLFDGRVD+SEIIA DPA+EGV
Sbjct:  352 KVPVVIVAGSADRLLPSVNEAERLKNLIPGCRSMVLEGHGHAPLFDGRVDMSEIIAGDPAMEGV 415          
BLAST of mRNA_S-dermatodea_contig89094.17005.1 vs. uniprot
Match: A0A835Z8H3_9STRA (Alpha/beta-hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.630e-11
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   13 VPVLVIAGSADRLLPSVAEASRLEKLIPGCRSMLLEGHGHAPLFDGRVDLSEIIAS 180
            V V VIAG+ADRLLPS AEA RL  +IP C  + L GHGHA LFD R  L  I+ S
Sbjct:  273 VSVTVIAGTADRLLPSAAEAQRLSGIIPDCSVVELRGHGHAALFDTRASLYSIVNS 328          
BLAST of mRNA_S-dermatodea_contig89094.17005.1 vs. uniprot
Match: UPI001682E689 (alpha/beta fold hydrolase n=2 Tax=unclassified Microcoleus TaxID=2642155 RepID=UPI001682E689)

HSP 1 Score: 63.2 bits (152), Expect = 3.400e-10
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   13 VPVLVIAGSADRLLPSVAEASRLEKLIPGCRSMLLEGHGHAPLFDGRVDLSEIIASDPALE 195
            VPVLVIAG+ADRLLPSV+EA RL    P  + ++L   GHA L +  VDL +I+ S   +E
Sbjct:  200 VPVLVIAGAADRLLPSVSEAKRLVNCFPNAKMVVLSDSGHACLLETEVDLYKILRSQKFIE 260          
BLAST of mRNA_S-dermatodea_contig89094.17005.1 vs. uniprot
Match: K9W116_9CYAN (Alpha/beta hydrolase fold protein n=1 Tax=Crinalium epipsammum PCC 9333 TaxID=1173022 RepID=K9W116_9CYAN)

HSP 1 Score: 60.1 bits (144), Expect = 4.490e-9
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   16 PVLVIAGSADRLLPSVAEASRLEKLIPGCRSMLLEGHGHAPLFDGRVDLSEIIAS 180
            PVLVIAG+AD LLPSVAEA RL   +P    ++L   GHA L +  V+L EII S
Sbjct:  201 PVLVIAGAADNLLPSVAEAERLVNCLPNAEMVVLPDSGHACLLEAEVNLYEIIKS 255          
BLAST of mRNA_S-dermatodea_contig89094.17005.1 vs. uniprot
Match: A0YPD5_LYNSP (Hydrolase_4 domain-containing protein n=2 Tax=Lyngbya TaxID=28073 RepID=A0YPD5_LYNSP)

HSP 1 Score: 60.1 bits (144), Expect = 4.890e-9
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   10 QVPVLVIAGSADRLLPSVAEASRLEKLIPGCRSMLLEGHGHAPLFDGRVDLSEIIASDPALEGV 201
            Q PVLVIAG+AD LLPSV EA  L K +P  R ++L   GHA L +  +DL EI+     L+G+
Sbjct:  207 QKPVLVIAGAADLLLPSVTEAQSLVKHLPNTRLVILPRSGHACLLETDIDLLEILQEQNFLDGL 270          
BLAST of mRNA_S-dermatodea_contig89094.17005.1 vs. uniprot
Match: A0A6P0QLV1_9CYAN (Alpha/beta hydrolase n=2 Tax=unclassified Microcoleus TaxID=2642155 RepID=A0A6P0QLV1_9CYAN)

HSP 1 Score: 59.7 bits (143), Expect = 6.240e-9
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   16 PVLVIAGSADRLLPSVAEASRLEKLIPGCRSMLLEGHGHAPLFDGRVDLSEIIASDPALE 195
            PVLVIAG+ADRLLPSV EA RL  L+P  + ++L   GH  L +  V+L EI+ S   L+
Sbjct:  201 PVLVIAGAADRLLPSVLEAERLVSLLPNAKKVVLPESGHTCLLEINVNLFEILKSQNFLD 260          
BLAST of mRNA_S-dermatodea_contig89094.17005.1 vs. uniprot
Match: UPI0019DFD886 (Alpha/beta hydrolase n=1 Tax=Oscillatoriaceae cyanobacterium M7585_C2015_266 TaxID=2774341 RepID=UPI0019DFD886)

HSP 1 Score: 59.3 bits (142), Expect = 8.200e-9
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   16 PVLVIAGSADRLLPSVAEASRLEKLIPGCRSMLLEGHGHAPLFDGRVDLSEIIASDPALE 195
            PVL +AG+ADRLLPSVAE  RL  ++P  + ++L   GHA L +  VDL +I+ +   LE
Sbjct:  201 PVLALAGTADRLLPSVAEVERLVNILPNAQKVILPESGHACLLETEVDLYKILQNHNFLE 260          
BLAST of mRNA_S-dermatodea_contig89094.17005.1 vs. uniprot
Match: A0A8J6RMX6_9CYAN (Alpha/beta fold hydrolase n=6 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J6RMX6_9CYAN)

HSP 1 Score: 59.3 bits (142), Expect = 8.350e-9
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   13 VPVLVIAGSADRLLPSVAEASRLEKLIPGCRSMLLEGHGHAPLFDGRVDLSEIIASDPALE 195
            +PVL IAG ADRLLPSVAEA  L  ++P  + ++L   GHA L +  V+L EI+ ++  LE
Sbjct:  200 LPVLAIAGGADRLLPSVAEAQHLASVLPNAKMLVLPRCGHACLLEADVNLYEIMKAENFLE 260          
BLAST of mRNA_S-dermatodea_contig89094.17005.1 vs. uniprot
Match: A0A2V0NLF5_9CHLO (Alpha beta-hydrolase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NLF5_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 1.160e-8
Identity = 25/55 (45.45%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   13 VPVLVIAGSADRLLPSVAEASRLEKLIPGCRSMLLEGHGHAPLFDGRVDLSEIIA 177
            VP +V+  + DR+LPS+AE +RL++LIPG + ++L   GHA L +  VDL+ ++A
Sbjct:  309 VPTVVVVSARDRMLPSLAEGARLQRLIPGAKRVILPNSGHAALLEFGVDLASLLA 363          
BLAST of mRNA_S-dermatodea_contig89094.17005.1 vs. uniprot
Match: A0A6N2EMC3_9CYAN (Alpha/beta hydrolase n=1 Tax=Cyanobium sp. PLM2.Bin73 TaxID=2480217 RepID=A0A6N2EMC3_9CYAN)

HSP 1 Score: 58.5 bits (140), Expect = 1.350e-8
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   10 QVPVLVIAGSADRLLPSVAEASRLEKLIPGCRSMLLEGHGHAPLFDGRVDLSEIIAS 180
            Q PVL++A  ADRLLPSV E  RLEKL+P  +++LL   GHA L +  + L  I+ S
Sbjct:  171 QQPVLMLASGADRLLPSVEEVGRLEKLLPSSQTVLLPQSGHACLLESELKLISILKS 227          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig89094.17005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M7_ECTSI1.260e-2781.25AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A835Z8H3_9STRA1.630e-1160.71Alpha/beta-hydrolase n=1 Tax=Tribonema minus TaxID... [more]
UPI001682E6893.400e-1052.46alpha/beta fold hydrolase n=2 Tax=unclassified Mic... [more]
K9W116_9CYAN4.490e-956.36Alpha/beta hydrolase fold protein n=1 Tax=Crinaliu... [more]
A0YPD5_LYNSP4.890e-950.00Hydrolase_4 domain-containing protein n=2 Tax=Lyng... [more]
A0A6P0QLV1_9CYAN6.240e-951.67Alpha/beta hydrolase n=2 Tax=unclassified Microcol... [more]
UPI0019DFD8868.200e-948.33Alpha/beta hydrolase n=1 Tax=Oscillatoriaceae cyan... [more]
A0A8J6RMX6_9CYAN8.350e-949.18Alpha/beta fold hydrolase n=6 Tax=Cyanobacteria Ta... [more]
A0A2V0NLF5_9CHLO1.160e-845.45Alpha beta-hydrolase n=1 Tax=Raphidocelis subcapit... [more]
A0A6N2EMC3_9CYAN1.350e-850.88Alpha/beta hydrolase n=1 Tax=Cyanobium sp. PLM2.Bi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig89094contigS-dermatodea_contig89094:264..464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1e-22
Seed eggNOG ortholog2880.D7G4M7
GOsGO:0003674,GO:0003824,GO:0004144,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010287,GO:0016101,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0019432,GO:0033306,GO:0034308,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046460,GO:0046463,GO:0046486,GO:0071704,GO:1901576,GO:1901615,GO:1903173
EggNOG free text desc.fatty alcohol metabolic process
EggNOG OGs2QQUD@2759,COG0204@1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925372.6422281-CDS-S-dermatodea_contig89094:263..4641622925372.6422281-CDS-S-dermatodea_contig89094:263..464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89094 264..464 -
1694079889.067554-CDS-S-dermatodea_contig89094:263..4641694079889.067554-CDS-S-dermatodea_contig89094:263..464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89094 264..464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig89094.17005.1prot_S-dermatodea_contig89094.17005.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig89094 264..464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig89094.17005.1

>prot_S-dermatodea_contig89094.17005.1 ID=prot_S-dermatodea_contig89094.17005.1|Name=mRNA_S-dermatodea_contig89094.17005.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=67bp
MARQVPVLVIAGSADRLLPSVAEASRLEKLIPGCRSMLLEGHGHAPLFDG
RVDLSEIIASDPALEGV
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mRNA from alignment at S-dermatodea_contig89094:264..464-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig89094.17005.1 ID=mRNA_S-dermatodea_contig89094.17005.1|Name=mRNA_S-dermatodea_contig89094.17005.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at S-dermatodea_contig89094:264..464- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGAGGCAGGTTCCTGTCTTGGTTATCGCGGGGTCCGCAGACAGGCT CCTGCCCAGCGTGGCGGAGGCGAGTCGCCTGGAAAAGCTGATCCCGGGGT GCCGTTCCATGCTGCTCGAGGGACACGGCCACGCCCCGCTGTTCGACGGC CGCGTGGACCTGTCCGAGATCATCGCGAGCGATCCAGCCCTGGAAGGCGT T
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Coding sequence (CDS) from alignment at S-dermatodea_contig89094:264..464-

>mRNA_S-dermatodea_contig89094.17005.1 ID=mRNA_S-dermatodea_contig89094.17005.1|Name=mRNA_S-dermatodea_contig89094.17005.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at S-dermatodea_contig89094:264..464- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGAGGCAGGTTCCTGTCTTGGTTATCGCGGGGTCCGCAGACAGGCT
CCTGCCCAGCGTGGCGGAGGCGAGTCGCCTGGAAAAGCTGATCCCGGGGT
GCCGTTCCATGCTGCTCGAGGGACACGGCCACGCCCCGCTGTTCGACGGC
CGCGTGGACCTGTCCGAGATCATCGCGAGCGATCCAGCCCTGGAAGGCGT
TATGGCGAGGCAGGTTCCTGTCTTGGTTATCGCGGGGTCCGCAGACAGGC
TCCTGCCCAGCGTGGCGGAGGCGAGTCGCCTGGAAAAGCTGATCCCGGGG
TGCCGTTCCATGCTGCTCGAGGGACACGGCCACGCCCCGCTGTTCGACGG
CCGCGTGGACCTGTCCGAGATCATCGCGAGCGATCCAGCCCTGGAAGGCG
TT
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