mRNA_S-dermatodea_contig8900.17001.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8900.17001.1
Unique NamemRNA_S-dermatodea_contig8900.17001.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8900.17001.1 vs. uniprot
Match: D8LH71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH71_ECTSI)

HSP 1 Score: 317 bits (812), Expect = 5.800e-97
Identity = 194/386 (50.26%), Postives = 245/386 (63.47%), Query Frame = 1 
Query:    7 SLKDAEKALVNDRWSEMRHKTIRQAALACIRAQQKEHRGPDPFDLSTVCTEGYIETVDRLIPHVNGDMDTLDDEELMAAVKESRNLKDIFMERRRGVHGCKVLALLKENKADTFQKEMRAFTKDMNHSLLPQPIISQALLAFKGALKKDLDATDESDGNDVDLQPSPRRPSLGGSA----------KKSSKMKATAMASPRRVSGNAQALARANEHLQREMTG-RPETVPEALAAINKNVAEPRSPPRKRVAARADGGGSAGERPTSSTRKRTKRSLTRRDSPGEQVDFDDSQSVDELQNIRPTLNNRPPPPTTTALRSPGRSVPQKKT--PRARVPWTEEEVTHLHAAVQALGKGRWSLALTQYKFQDCRTSVDLKDKWRNVTKD 1125
            SL + + A++ +RW +MR   +RQAAL+C  AQQ+ H  P+PFD  +VCT+ YI+ VDRLIP V+ D+D LDDEE M+A KE RNL D+F E+   V   K+  LLKENK  TF+K+M+AFT+ ++ +LLP+P     LL        D++  D +DG  V LQ S  +P +              K  S M AT    P      AQALA+ANE LQ+E+   RP TV EALA I++ +  P SP  KR A   + GG A +RP  +  +R+ +S+TRR+S GEQVDFDDSQSVDE Q  R  L +RP P    AL S    V  KK   PR R PWTEEEV HL AAV ALG+G+WSLAL QYKFQDCRT+VDLKDKWRN+TKD
Sbjct:   98 SLANTDSAIITERWPQMRAALVRQAALSCFLAQQRNHARPEPFDWGSVCTKAYIKVVDRLIPQVDFDLDALDDEEQMSASKERRNLTDVFKEKHCSVSSIKLRTLLKENKVGTFEKDMKAFTRALDQALLPRP----KLLTMYSNDGSDMNVVDMTDGRQVGLQGSTSKPPMRSXXXXXXXXXXXXKAVSPMPATEETPP-----TAQALAKANEGLQQELNDHRPGTVSEALA-ISERLPPPSSPAAKRAAVEDNSGGPADKRPGRAPSRRSGKSVTRRESRGEQVDFDDSQSVDEPQEARAALGDRPSPAKAAALPSASGKVKAKKRSGPRTRHPWTEEEVKHLKAAVMALGRGKWSLALAQYKFQDCRTAVDLKDKWRNLTKD 473
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BLAST of mRNA_S-dermatodea_contig8900.17001.1 vs. uniprot
Match: A0A6B2LV33_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LV33_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 1.260e-7
Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:  970 RVPWTEEEVTHLHAAVQALGKGRWSLALTQYKFQDCRTSVDLKDKWRNVTKD*RTRA*DTPLV 1158
            R+ WTE EV  L   V   G G W+  L  YKF   RTSV LKDKWRN++K  R++    P +
Sbjct:   17 RLTWTEHEVKQLEKGVAVYGVGHWAEILKAYKFLPERTSVSLKDKWRNLSKKQRSQTKFKPFL 79
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BLAST of mRNA_S-dermatodea_contig8900.17001.1 vs. uniprot
Match: UPI000A2A71D7 (telomeric repeat-binding factor 1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A71D7)

HSP 1 Score: 62.4 bits (150), Expect = 1.840e-6
Identity = 36/77 (46.75%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:  904 PPTTTALRSPGR----SVPQKKTPRARVPWTEEEVTHLHAAVQALGKGRWSLALTQYKFQDCRTSVDLKDKWRNVTK 1122
            P  T  L SP R    S+P+    R + PWTEEE++ L   V   G+G W+  L  Y F+  RTSVDLKDKWRN +K
Sbjct:  383 PSITAGLPSPKRCLNISLPKPPKRRKKNPWTEEELSWLCKGVDIYGEGNWAKILRMYSFR-FRTSVDLKDKWRNFSK 458
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BLAST of mRNA_S-dermatodea_contig8900.17001.1 vs. uniprot
Match: A0A2U1QK75_ARTAN (Homeodomain-like protein n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QK75_ARTAN)

HSP 1 Score: 58.2 bits (139), Expect = 4.140e-5
Identity = 55/140 (39.29%), Postives = 71/140 (50.71%), Query Frame = 1 
Query:  715 RKRVAARADGG-GSAGERPTSSTRKRTKRSLTRRDSPGEQVDFDDS-QSVDELQNIRPTLNNRPPPPTTTALRSPGRSVPQKKTPRARVPWTEEEVTHLHAAVQALGKGRWSLALTQYK--FQDCRTSVDLKDKWRNVTK 1122
            RK  A  ADGG G  G++      +R K SL  R+S    V++ DS  + DE    RP LN  P   T + L     +   K+  + R  WT  E   L   V   GKG W L L+ Y+  F+D RT VDLKDKWRN+T+
Sbjct:  354 RKGKALEADGGEGLRGDQ-----NERRKPSLMERNSTAHTVEWSDSIDTSDEGSPTRPHLNT-PKKRTVSPLSIYNINKLAKQRKKRR--WTVVEEDALRTGVHKYGKGNWKLILSMYRDIFED-RTEVDLKDKWRNLTR 484
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BLAST of mRNA_S-dermatodea_contig8900.17001.1 vs. uniprot
Match: A0A2V3J0U8_9FLOR (Telomere repeat-binding factor 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0U8_9FLOR)

HSP 1 Score: 58.5 bits (140), Expect = 4.800e-5
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:  940 SVPQKKTPR-ARVPWTEEEVTHLHAAVQALGKGRWSLALTQY--KFQDCRTSVDLKDKWRNVTK 1122
            +V Q K+ R  R+ WTE EV  L + VQ  G+GRW++ L +   +F   R SVDLKDKWRN++K
Sbjct:  108 NVSQNKSRRHKRIKWTEGEVQALRSGVQKHGEGRWAVILRENADRFHPVRISVDLKDKWRNLSK 171
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BLAST of mRNA_S-dermatodea_contig8900.17001.1 vs. uniprot
Match: A0A7S0DGD0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DGD0_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 4.940e-5
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:  979 WTEEEVTHLHAAVQALGKGRWSLALTQYKFQ-DCRTSVDLKDKWRNVTK 1122
            WT EE   L   V+ LGKGRWS+ L +Y+     RT+VDLKDKWRN+ +
Sbjct:   46 WTREEERTLVKGVKELGKGRWSMILHKYRGALRGRTTVDLKDKWRNIER 94
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BLAST of mRNA_S-dermatodea_contig8900.17001.1 vs. uniprot
Match: A0A7S3Y534_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y534_HETAK)

HSP 1 Score: 56.2 bits (134), Expect = 5.060e-5
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:  910 TTTALRSP--GRSVPQKKTPRARVPWTEEEVTHLHAAVQALGKGRWSLALTQYKFQDCRTSVDLKDKWRNVTK 1122
            T   L SP  G + P+++    R  W+  EV +L   V  LG G W+  L +Y+F D RTSV+LKDKWRN+ K
Sbjct:  164 TKIGLSSPPKGGTFPRRRRGGGRRKWSAAEVRNLERGVAELGVGNWAPILARYQF-DGRTSVNLKDKWRNLEK 235
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BLAST of mRNA_S-dermatodea_contig8900.17001.1 vs. uniprot
Match: A0A7C9A9Q5_OPUST (Uncharacterized protein n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9A9Q5_OPUST)

HSP 1 Score: 57.4 bits (137), Expect = 7.740e-5
Identity = 29/55 (52.73%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:  964 RARVPWTEEEVTHLHAAVQALGKGRWSLALTQYK--FQDCRTSVDLKDKWRNVTK 1122
            R R  WT EE   L   VQ  GKG W L L  Y+  F++ RT VDLKDKWRN+T+
Sbjct:  475 RTRKKWTPEEEDALRTGVQKFGKGNWKLILHSYREIFRE-RTDVDLKDKWRNMTR 528
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BLAST of mRNA_S-dermatodea_contig8900.17001.1 vs. uniprot
Match: A0A251RUZ9_HELAN (Putative ulp1 protease family catalytic domain, Homeodomain-like protein n=4 Tax=Helianthus annuus TaxID=4232 RepID=A0A251RUZ9_HELAN)

HSP 1 Score: 56.6 bits (135), Expect = 7.760e-5
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  979 WTEEEVTHLHAAVQALGKGRWSLALTQYKFQ---DCRTSVDLKDKWRNVTK 1122
            WT  EV  LHA V+  G G+W+L L+  +F    D R++VDLKDKWRN+T+
Sbjct:    8 WTNNEVEALHAGVKKHGAGKWTLILSDSQFASSFDNRSNVDLKDKWRNLTR 58
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BLAST of mRNA_S-dermatodea_contig8900.17001.1 vs. uniprot
Match: E1Z3D1_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z3D1_CHLVA)

HSP 1 Score: 55.5 bits (132), Expect = 9.040e-5
Identity = 31/70 (44.29%), Postives = 38/70 (54.29%), Query Frame = 1 
Query:  943 VPQKKTPRARVPWTEEEVTHLHAAVQALGKGRWSLALTQYK--FQDCRTSVDLKDKWRNVTKD*RTRA*D 1146
             PQ K  R    WT +EV  L   V   G+G+W+L L Q +  F   RTSVD+KDKWRN+    R R  D
Sbjct:   92 TPQLKRRRQTQRWTSQEVAELQRLVAMHGEGQWALVLKQGRAVFAAGRTSVDIKDKWRNLNTPPRQREGD 161
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8900.17001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LH71_ECTSI5.800e-9750.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6B2LV33_9EUKA1.260e-746.03Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
UPI000A2A71D71.840e-646.75telomeric repeat-binding factor 1 n=1 Tax=Exaiptas... [more]
A0A2U1QK75_ARTAN4.140e-539.29Homeodomain-like protein n=2 Tax=Artemisia annua T... [more]
A0A2V3J0U8_9FLOR4.800e-548.44Telomere repeat-binding factor 5 n=1 Tax=Gracilari... [more]
A0A7S0DGD0_9EUKA4.940e-553.06Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S3Y534_HETAK5.060e-543.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7C9A9Q5_OPUST7.740e-552.73Uncharacterized protein n=2 Tax=Opuntia streptacan... [more]
A0A251RUZ9_HELAN7.760e-550.98Putative ulp1 protease family catalytic domain, Ho... [more]
E1Z3D1_CHLVA9.040e-544.29Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8900contigS-dermatodea_contig8900:2843..8976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score63.2
Seed ortholog evalue2.9e-07
Seed eggNOG ortholog10224.XP_006817502.1
Preferred nameTERF2
KEGG koko:K11111
KEGG ModuleM00424
GOsGO:0000018,GO:0000019,GO:0000228,GO:0000723,GO:0000781,GO:0000782,GO:0000783,GO:0000784,GO:0000981,GO:0001673,GO:0001701,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003691,GO:0003697,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006275,GO:0006282,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006810,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0007017,GO:0007018,GO:0007275,GO:0007568,GO:0007569,GO:0008022,GO:0008088,GO:0008089,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010948,GO:0010970,GO:0016043,GO:0016233,GO:0016604,GO:0019219,GO:0019222,GO:0019899,GO:0030705,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031627,GO:0031848,GO:0031974,GO:0031981,GO:0032069,GO:0032074,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032207,GO:0032208,GO:0032210,GO:0032211,GO:0032213,GO:0032214,GO:0032501,GO:0032502,GO:0032768,GO:0032770,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033262,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034641,GO:0042162,GO:0042592,GO:0042802,GO:0042803,GO:0043009,GO:0043047,GO:0043073,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043565,GO:0044087,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045738,GO:0045786,GO:0045910,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046907,GO:0046983,GO:0048239,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0050999,GO:0051000,GO:0051052,GO:0051053,GO:0051054,GO:0051093,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051276,GO:0051336,GO:0051341,GO:0051346,GO:0051353,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061820,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070187,GO:0070198,GO:0070727,GO:0071704,GO:0071840,GO:0072695,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090329,GO:0090342,GO:0090344,GO:0090398,GO:0090657,GO:0097159,GO:0098505,GO:0098687,GO:0098847,GO:0098930,GO:0099111,GO:0140110,GO:1901360,GO:1901363,GO:1902576,GO:1903506,GO:1903516,GO:1903517,GO:1903770,GO:1903824,GO:1904353,GO:1904354,GO:1904356,GO:1904357,GO:1904429,GO:1904430,GO:1904533,GO:1904534,GO:1905777,GO:1905778,GO:1905838,GO:1905839,GO:2000104,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2000772,GO:2000773,GO:2001020,GO:2001021,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.negative regulation of telomere maintenance via recombination
EggNOG OGs2A93T@1,2RYHN@2759,38WTW@33154,3BAS9@33208,3CT4T@33213
COG Functional cat.K
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko03032
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-24_000790.1
Exons8
Model size2172
Cds size1074
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8900.17001.1prot_S-dermatodea_contig8900.17001.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8900 2897..7932 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925372.2973511-UTR-S-dermatodea_contig8900:2842..28961622925372.2973511-UTR-S-dermatodea_contig8900:2842..2896Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8900 2843..2896 +
1694079888.8104663-UTR-S-dermatodea_contig8900:2842..28961694079888.8104663-UTR-S-dermatodea_contig8900:2842..2896Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8900 2843..2896 +
1622925372.402965-UTR-S-dermatodea_contig8900:7932..89761622925372.402965-UTR-S-dermatodea_contig8900:7932..8976Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8900 7933..8976 +
1694079888.9056711-UTR-S-dermatodea_contig8900:7932..89761694079888.9056711-UTR-S-dermatodea_contig8900:7932..8976Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8900 7933..8976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925372.310796-CDS-S-dermatodea_contig8900:2896..29201622925372.310796-CDS-S-dermatodea_contig8900:2896..2920Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8900 2897..2920 +
1694079888.8232608-CDS-S-dermatodea_contig8900:2896..29201694079888.8232608-CDS-S-dermatodea_contig8900:2896..2920Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8900 2897..2920 +
1622925372.3230004-CDS-S-dermatodea_contig8900:3140..33891622925372.3230004-CDS-S-dermatodea_contig8900:3140..3389Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8900 3141..3389 +
1694079888.8329446-CDS-S-dermatodea_contig8900:3140..33891694079888.8329446-CDS-S-dermatodea_contig8900:3140..3389Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8900 3141..3389 +
1622925372.3327062-CDS-S-dermatodea_contig8900:3532..36221622925372.3327062-CDS-S-dermatodea_contig8900:3532..3622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8900 3533..3622 +
1694079888.8418295-CDS-S-dermatodea_contig8900:3532..36221694079888.8418295-CDS-S-dermatodea_contig8900:3532..3622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8900 3533..3622 +
1622925372.3455184-CDS-S-dermatodea_contig8900:5807..60021622925372.3455184-CDS-S-dermatodea_contig8900:5807..6002Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8900 5808..6002 +
1694079888.8512533-CDS-S-dermatodea_contig8900:5807..60021694079888.8512533-CDS-S-dermatodea_contig8900:5807..6002Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8900 5808..6002 +
1622925372.3590722-CDS-S-dermatodea_contig8900:6180..63321622925372.3590722-CDS-S-dermatodea_contig8900:6180..6332Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8900 6181..6332 +
1694079888.8607879-CDS-S-dermatodea_contig8900:6180..63321694079888.8607879-CDS-S-dermatodea_contig8900:6180..6332Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8900 6181..6332 +
1622925372.3737853-CDS-S-dermatodea_contig8900:6455..65221622925372.3737853-CDS-S-dermatodea_contig8900:6455..6522Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8900 6456..6522 +
1694079888.8706925-CDS-S-dermatodea_contig8900:6455..65221694079888.8706925-CDS-S-dermatodea_contig8900:6455..6522Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8900 6456..6522 +
1622925372.3841891-CDS-S-dermatodea_contig8900:7244..73161622925372.3841891-CDS-S-dermatodea_contig8900:7244..7316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8900 7245..7316 +
1694079888.8804927-CDS-S-dermatodea_contig8900:7244..73161694079888.8804927-CDS-S-dermatodea_contig8900:7244..7316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8900 7245..7316 +
1622925372.393807-CDS-S-dermatodea_contig8900:7707..79321622925372.393807-CDS-S-dermatodea_contig8900:7707..7932Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8900 7708..7932 +
1694079888.8955946-CDS-S-dermatodea_contig8900:7707..79321694079888.8955946-CDS-S-dermatodea_contig8900:7707..7932Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8900 7708..7932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8900.17001.1

>prot_S-dermatodea_contig8900.17001.1 ID=prot_S-dermatodea_contig8900.17001.1|Name=mRNA_S-dermatodea_contig8900.17001.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=358bp
MRHKTIRQAALACIRAQQKEHRGPDPFDLSTVCTEGYIETVDRLIPHVNG
DMDTLDDEELMAAVKESRNLKDIFMERRRGVHGCKVLALLKENKADTFQK
EMRAFTKDMNHSLLPQPIISQALLAFKGALKKDLDATDESDGNDVDLQPS
PRRPSLGGSAKKSSKMKATAMASPRRVSGNAQALARANEHLQREMTGRPE
TVPEALAAINKNVAEPRSPPRKRVAARADGGGSAGERPTSSTRKRTKRSL
TRRDSPGEQVDFDDSQSVDELQNIRPTLNNRPPPPTTTALRSPGRSVPQK
KTPRARVPWTEEEVTHLHAAVQALGKGRWSLALTQYKFQDCRTSVDLKDK
WRNVTKD*
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mRNA from alignment at S-dermatodea_contig8900:2843..8976+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8900.17001.1 ID=mRNA_S-dermatodea_contig8900.17001.1|Name=mRNA_S-dermatodea_contig8900.17001.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6134bp|location=Sequence derived from alignment at S-dermatodea_contig8900:2843..8976+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAGACAGCCTGAAAGACGCTGAAAAGGCCTTGGTTAACGACAGATGGTC
GGAGATGAGGCACAAGACTATCCGACAGGTGAGACCGGTGGCGTGCTCAC
ATCTGCTGCTGCTTGTGGAGTGGTCCTCAGTAGTGTACGAACACTAGTGG
TACCTGTAACAAGGCCTCGCGTTATTGTAAACCATTTCATTTTGCTTGGT
TGGGGTCTTTCTGCCTCGCCTTGAAACGCTATCGAGGTACAAGTACCGAC
TGTCGTGGGCCTTGCCGCCTTCCTGCCTTCTGCACTTGTGGTGTGCAGGC
TGCACTGGCATGCATCAGAGCGCAACAGAAAGAGCACAGGGGGCCCGACC
CGTTCGACCTGAGCACGGTCTGTACAGAAGGATATATCGAAACCGTGGAT
CGACTCATCCCACACGTCAACGGTGACATGGATACGCTTGACGACGAAGA
GCTCATGGCTGCTGTGAAAGAGAGCCGCAACTTAAAGGACATTTTCATGG
AGAGGCGCCGCGGTGTACACGGCTGCAAAGTACTTGCACTGCTGAAGGTA
AACGAACTTGCCGGTACGACACAGTAGGGATTTCACCGACGTCCTCGCCA
TGTGCCACCTGATGTGCGCCGCCATAAAACATACTTTTTGTCGATGTCTG
AGGCTGACATGTCAAGCGTGCCCGGATCGTGCCGCACCAGGAGAACAAGG
CGGACACCTTTCAGAAGGAGATGAGGGCGTTTACGAAGGATATGAATCAT
TCGTTGCTGCCTCAACCGATAATTTCCCAGGTCAGTGGATGTCGATCGCG
TTGTGTTGGAGTCTTGCGTTTATATTTTGAAGTGCTTCCTTGATTTTGAC
TTGGTTGTAATACATTTTCATACACTAGTGGGAAGCCACGGCTACGCCCG
CGTGTAAGGTGTGCGTTGGCTGCTGCCTGTTGCGTCCCGCGAGCGAGGGA
GGGATCGAGCTATTACAGACACGGGGGTCGACCGAACGCGACATGGAGGT
TGAACGCGGTCGAGCTACTGTGCGTGTCGCTGCTGTGCGTGTGCAGTGGT
GGGTGCAATGTTGACTTTTTGTCGCGGTGGGTGTGTGCAGTTTTCTTTTT
TCGCTCGACGCAAATAGCGCTCTACACAAACATCAAGTTGTTTGGCATCA
GACAGCACCCTTGTCTAAAATCGATATACACAATCGGTCATTGTTGCATT
AATTAATAAGGTAAGCTGGTCTCAAACTCTCAGAAACCAGGCCAGTGGCC
AAAATACGACACTATCGTCCAGAGGGATGAGAACCGCGAATAGAAGGAAA
CTTAACGGTGTCACGACAGGTATTACCAGAAGCTCTAAATAGTAAGAGTA
GTACTACGCAGCATCACATTTTAATATAAAAACAATGGAAACCGTTGTGT
ACAACTCTGCGAGCGCGTCAGTAGCCAGCATGCGTCTCCGATACGGCTCC
CTCACGGTATCCTTACTCTGTGGTCCCATTGAACAATTAACGCGAGACCA
CACAGCGAGAGAGAAGGAACGACACGGAAAAGCAAGGGAGACGCACGGGC
TGAAGTTGGTGGGGGAAATGCTCCCCGTGTTTCCACTCTAAAGCGGGAAG
AGGTCCACAACAAAAATGGAAATGTCTGCCGAAGACGATGCAGTAGCGGG
TGGAAAAATAGTGTTAAAGGCGAAGACGCAACAAATCATTTAAAATAACT
ATTAATAGAGAGATTGGTCAAACGCCATACTACACAACTAGTTGCCGAAA
CTTTAGCTAAGTTCCCGACGGAAACAAAGAATGCCCAGGCTACTCTTTTT
TTCTGCTGTCCACCGACAGATCTGTTGTGTCTGCTTCGGTGCTCTGGAGA
ACGCGTGGCGCCAACGTCTCGAACGAAACGGACTCAGGCAGCAGCATGGA
CAGCTGCGATTGAGTTCAAGGCAGACGCCGTGCTCACATGCCACCGCCAC
GAGAAGCATAAGTACATAAGTAGGAAGAAGCGGTAATCGTGGTGGCACCA
GCATCGTCAAGACTGTGCTACAAGTTGAGATACGGCGATGACTATGTTTT
CGAATTTCAGGGTCATGCCAAGCCACACCACACGCGAAAAAAATCGCTAC
AGACACGACAGAGACACACGCTCCCCCCCCCGATCCTAGCGTGACCATGT
CACAGCGATAACGCACGGTGCCGGTGGCAGGCTATGCTCGGGCGACCAAC
ACTGGCCTCATGGCCAGAGTCGGAATCAAACGGCTACACAGACCGGCGTC
TCTAGTGGGTTTCCTCTTTTTTAGTCAATCATCGATCGACATATTCTTCT
GTTTGCCTTTTTGTCGTTAAGATACAAGCATACACTTGTTCTGAATCTGT
CAACAGATCTGTCCATCGGCAGGTTTTTTCGACATCTTTTATTTTATCAA
GAAAGGCCCTAGATTATCAAACAGTGGTCAAACGATTTTTGCGGCCCTCT
CCTTTGTTCGGCCCGTCACTTTTCGACGCAGGGGCGCATGGCGAGTCAAG
GGCGGGGGCTCATCACACAAAGCTAGCTCTCCCGCCACGAGATTCAACAT
TCTGTGTAGCCGCATGCGCGTTTGTGTCAATCATTATGTATTAATAGTGT
GTTTGCAACCAAGACCCTTTGCTAAATAATGTTGTGAGGCTGAAATGTGC
AAGGGTCGATATTGTGCTGCTAAAAGGGTAGCCGACAACGTTGGTCGTTC
ATCGCGCAAAAACGATTCTTATGTTTCGTTTCGTTTGTTTCCGCACATGT
AAAGTCGTGAACCTAACCGTAGACCTTGCATATGCTGTTACAGTAGGGTC
TGACCCATGAATGTTGTGAAGAAGCATCTCGTCTGCTTGATTCATCCGCT
CGAGCGTGTGGGCAATTGCTCGTGTATCGAGTCTTGACTGTTCTTGTTTT
ACGGCCGTGTCTCGTCTGCTCGGGTGCTGCGTTCATGTTTGCGTCATGTG
TTCCTGTCCTAGCAGGCGCTACTTGCCTTCAAAGGCGCCTTGAAGAAGGA
CCTGGACGCGACGGATGAATCGGATGGAAATGACGTCGACCTCCAACCGT
CGCCCCGAAGACCGTCTTTGGGCGGCTCGGCGAAGAAATCCTCGAAGATG
AAGGCTACCGCGATGGCATCACCCAGACGTGTTTCGGGGAATGCCCAGGC
ACTGGCAAGGGTACGTATCCACGCACTTACACCCTTTATTAGCATTCTTG
GTTGTTTGGGGGGGCGTCCTTTTTCGTTGCGCACCGATTGAATAGGCCGT
GCGGCGCCTGAATAGGCCGTGCGGCGCCGAGCAGGCCTGTCTTGAACCCT
GTGTTCTTCCCATCGACTTTGCGCTATCTCCTATATAGGCGAACGAACAC
CTACAGCGAGAGATGACAGGACGTCCCGAAACTGTGCCTGAGGCGCTTGC
CGCCATCAACAAGAACGTGGCTGAGCCACGCAGCCCCCCACGCAAGCGTG
TGGCTGCCAGGGCTGATGGCGGTGGATCAGCTGGCGAAAGGTGCGTTACG
GCTACCTCTGGGGCTTCGCCGTTCGCCACTGCCTCGACCTAGAACGTCGG
TCGTTGCCGCGATCTTTGACACTAATGTACGCTCGTGCCGTGTCTTGTTG
AATCGGACCACAGGCCGACATCATCCACAAGGAAGAGGACCAAGAGATCT
CTCACGAGGCGCGACTCTCCGGGAGAGCAGGTATGAACTTACCTTACTCC
TTTGACACCCTTAAAAATAGCGGGGGTGGCGCAAGTGGGATGGAATGTGA
GTGAGCAGCGGTCGCGGAAGCACCAAGAATGCACAGATGTGCATGCATAC
TTGACAGTACACTAATAATAACGTATTTATTATGTAGACCGAGAGTAAAA
TTCCTTACTTGTCGGAACAAATATTAAAAAATGAGTTTTTAAGTATTTAT
CTCCGTTCAACATATCGGGTGCTCCCACCGCAGGGCAGCCAAGACAAGCG
AGCTGTAAGCAGTGGGGGGGCTTGCGCTGTCAACAACGTTTTTGCCGTGA
TCTCTTTATCAGTTGAGGCATAATTGTATAAGTATGGCTCCGCCCTCGTG
GTGAAACCGGCGACGCCAAGCGTACCTGGTGATGAAGTGACCAAGTTCGA
ATCCGACCACAGGCCTTACATGGTCTCAGCTACTGTTTTTGCACAGAGGC
CAAATATTGATATCAGAGGAAAGCGTTACGGTTACGCGCGGAAAAGCGCC
GACGTCGGCACGAATCGTTTGTGCGGCCACCACCGCCCATTGACGACATG
TGAGCAGAGGGGGTGCTGAACCCGACGCGCCGCAGTCATTCAAGGCACAA
GGCGGAAGTAAGATTGCATGATACCTGACAAAATGGAACACACTTGATGC
AACTTGTAGGTCATATATGCCGCTCACCGTCGCCCCCCCGACCCCCATCA
AGGTGGACTTCGACGACTCACAGAGCGTTGACGAGCTGCAGAACATCCGG
CCCACCCTGAACAACCGCCCGCCGGTAAGCCTTTCGTTGTGGGCGCACGA
CTGATACTCGCATTGTGTTTGAGTACGTTCTGTGAAATGAAGTGTATGTC
GCCGGAACAGCCTGAACTACAAGTAGGCGGTTAGTACAAGGTCGCGGTTC
GATGTTGATGTGTCAATGTCAATGTCAATGTCGCGCCCTATGCTAAAATA
GCGAATCCGAGGCTGTTGGCTGTATATACTGCTGCTGGCGCGGAAGTCGT
ATGATTTCGTTGATAGCTACGCTTGTCCTTTCGGCCAGCCAGGCTGCCTT
CGGCAGCCCCGACGCTCTGCGCGGTAGTGACAGAGAAACCTGTTACGGGA
TGTTCGGTGCAGTTACTGCTTGTTGACTCCTGTGTTTTTCTCTTATGCAC
GTTCGTGTGGTGCAGCCTCCGACTACAACTGCGCTTCGATCGCCAGGCCG
TTCGGTGCCGCAGAAGAAAACTCCAAGGGCAAGAGTTCCCTGGACTGAGG
AAGAGGTGACTCACCTCCACGCTGCTGTGCAAGCATTGGGGAAGGGACGA
TGGTCGCTGGCGCTGACCCAGTACAAATTCCAGGACTGCCGCACTTCCGT
GGACCTGAAGGACAAGTGGCGCAACGTAACGAAGGACTGAAGAACCAGGG
CATGAGACACGCCCCTTGTATGTCACACATGGCGCTTCACCGGAAGCGGT
ATGAGTTGTTGCCATGCACGGCGGAAAGCTAGCGTTCCTTCCTCACGTTT
TGATTTGCTTTTGGATGGTGTGGGATGCGTGTAAGGCGCAAATGCATCGA
CACGCCCTGCGATTTGTCGAGATGGCGACGGAGGTAACGCAAGTGTGGTC
AATACTGCAACATGAAATTTCTTGTTAGTTCTTGTCGGGTCTTTCCTCTT
CTAGGGTTTTCTTGGTCGCCTTAAATTTGAGACGCGCGTTTATTCTGGAA
TATAACCTGGCTATCGGTAGCCGTCGTCCGGACTGAGTTGGTATGTTGGT
TTGTTTCGGTAAACAACTTGCTCTCGGGTGCTAGAATATTTTCTGCCTTG
AAATGCAACGGATGCGTGGGGTGTTCAAACGTTGACGCTGACGAGGATGA
AGGCGTTGATACTCTAATAATTGCCGGGGTCTTGTATCACGTAGCACGTA
CGCAGTAGATTGACGTTGTAGCGCAATGACACCTTCCAAATGTCGGGGTT
CCAAAATCAAAGCTGTGTGATATCTCCCTGTTGTTGTGGCTTGTGCGTTA
CTGGACGACCCATCGTACCAAGCATCAAAGAGAGAAGAAAAAGGTAACCC
CGGCGAGACCTGCGAAACAACCCGGCCAGGTAGATATTATGCATAGGTTC
TGAATCCAGATTGTTGAGTACGACGAAGAAGCCGATGATATTCGGCCCCC
TTTAGTGTATGTAGAGTATCTCCGCTCTCTTTTTTGCGTATGATGTGTAC
GGTCATTTCATGCAGTACAATATGCATCCATAGGTTGGTACATACAATAG
TCGCATCGTAGGTGTGGCGGCTATTTGTTCATTGAAGGTGCACTGGTGTA
TGTATTTGGTGTACTGGCGTGCGGGGAGGGTAGCTGGGGTGGAGTTGTTT
ATTGTGCTGCAGTGCACCCCGCGCCCCGTGGTTGAACTGGTGACCAACAG
CCCAGTAAGCGGAGGACCGGGGTTCGAATCCCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8900:2843..8976+

>mRNA_S-dermatodea_contig8900.17001.1 ID=mRNA_S-dermatodea_contig8900.17001.1|Name=mRNA_S-dermatodea_contig8900.17001.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2148bp|location=Sequence derived from alignment at S-dermatodea_contig8900:2843..8976+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGCACAAGACTATCCGACAGATGAGGCACAAGACTATCCGACAGGC
TGCACTGGCATGCATCAGAGCGCAACAGAAAGAGCACAGGGGGCCCGACC
CGTTCGACCTGAGCACGGTCTGTACAGAAGGATATATCGAAACCGTGGAT
CGACTCATCCCACACGTCAACGGTGACATGGATACGCTTGACGACGAAGA
GCTCATGGCTGCTGTGAAAGAGAGCCGCAACTTAAAGGACATTTTCATGG
AGAGGCGCCGCGGTGTACACGGCTGCAAAGTACTTGCACTGCTGAAGGCT
GCACTGGCATGCATCAGAGCGCAACAGAAAGAGCACAGGGGGCCCGACCC
GTTCGACCTGAGCACGGTCTGTACAGAAGGATATATCGAAACCGTGGATC
GACTCATCCCACACGTCAACGGTGACATGGATACGCTTGACGACGAAGAG
CTCATGGCTGCTGTGAAAGAGAGCCGCAACTTAAAGGACATTTTCATGGA
GAGGCGCCGCGGTGTACACGGCTGCAAAGTACTTGCACTGCTGAAGGAGA
ACAAGGCGGACACCTTTCAGAAGGAGATGAGGGCGTTTACGAAGGATATG
AATCATTCGTTGCTGCCTCAACCGATAATTTCCCAGGAGAACAAGGCGGA
CACCTTTCAGAAGGAGATGAGGGCGTTTACGAAGGATATGAATCATTCGT
TGCTGCCTCAACCGATAATTTCCCAGGCGCTACTTGCCTTCAAAGGCGCC
TTGAAGAAGGACCTGGACGCGACGGATGAATCGGATGGAAATGACGTCGA
CCTCCAACCGTCGCCCCGAAGACCGTCTTTGGGCGGCTCGGCGAAGAAAT
CCTCGAAGATGAAGGCTACCGCGATGGCATCACCCAGACGTGTTTCGGGG
AATGCCCAGGCACTGGCAAGGGCGCTACTTGCCTTCAAAGGCGCCTTGAA
GAAGGACCTGGACGCGACGGATGAATCGGATGGAAATGACGTCGACCTCC
AACCGTCGCCCCGAAGACCGTCTTTGGGCGGCTCGGCGAAGAAATCCTCG
AAGATGAAGGCTACCGCGATGGCATCACCCAGACGTGTTTCGGGGAATGC
CCAGGCACTGGCAAGGGCGAACGAACACCTACAGCGAGAGATGACAGGAC
GTCCCGAAACTGTGCCTGAGGCGCTTGCCGCCATCAACAAGAACGTGGCT
GAGCCACGCAGCCCCCCACGCAAGCGTGTGGCTGCCAGGGCTGATGGCGG
TGGATCAGCTGGCGAAAGGCGAACGAACACCTACAGCGAGAGATGACAGG
ACGTCCCGAAACTGTGCCTGAGGCGCTTGCCGCCATCAACAAGAACGTGG
CTGAGCCACGCAGCCCCCCACGCAAGCGTGTGGCTGCCAGGGCTGATGGC
GGTGGATCAGCTGGCGAAAGGCCGACATCATCCACAAGGAAGAGGACCAA
GAGATCTCTCACGAGGCGCGACTCTCCGGGAGAGCAGGCCGACATCATCC
ACAAGGAAGAGGACCAAGAGATCTCTCACGAGGCGCGACTCTCCGGGAGA
GCAGGTGGACTTCGACGACTCACAGAGCGTTGACGAGCTGCAGAACATCC
GGCCCACCCTGAACAACCGCCCGCCGGTGGACTTCGACGACTCACAGAGC
GTTGACGAGCTGCAGAACATCCGGCCCACCCTGAACAACCGCCCGCCGCC
TCCGACTACAACTGCGCTTCGATCGCCAGGCCGTTCGGTGCCGCAGAAGA
AAACTCCAAGGGCAAGAGTTCCCTGGACTGAGGAAGAGGTGACTCACCTC
CACGCTGCTGTGCAAGCATTGGGGAAGGGACGATGGTCGCTGGCGCTGAC
CCAGTACAAATTCCAGGACTGCCGCACTTCCGTGGACCTGAAGGACAAGT
GGCGCAACGTAACGAAGGACTGACCTCCGACTACAACTGCGCTTCGATCG
CCAGGCCGTTCGGTGCCGCAGAAGAAAACTCCAAGGGCAAGAGTTCCCTG
GACTGAGGAAGAGGTGACTCACCTCCACGCTGCTGTGCAAGCATTGGGGA
AGGGACGATGGTCGCTGGCGCTGACCCAGTACAAATTCCAGGACTGCCGC
ACTTCCGTGGACCTGAAGGACAAGTGGCGCAACGTAACGAAGGACTGA
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