mRNA_S-dermatodea_contig88959.16996.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig88959.16996.1
Unique NamemRNA_S-dermatodea_contig88959.16996.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig88959.16996.1 vs. uniprot
Match: A0A4Y5T8D2_9PHAE (NADH dehydrogenase subunit 4L n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8D2_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.980e-11
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:    1 VAACESSVGLAIILVYYRVRGSIRIDQASLLK 96
            VAACESS+GLAIILVYYRVRGSIR+DQASLLK
Sbjct:   68 VAACESSIGLAIILVYYRVRGSIRVDQASLLK 99
[Close]
BLAST of mRNA_S-dermatodea_contig88959.16996.1 vs. uniprot
Match: Q2TUC4_DICDH (NADH dehydrogenase subunit 4L n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUC4_DICDH)

HSP 1 Score: 61.2 bits (147), Expect = 2.980e-11
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:    1 VAACESSVGLAIILVYYRVRGSIRIDQASLLK 96
            +AACESS+GLAIILVYYRVRGSIRIDQASLLK
Sbjct:   68 IAACESSIGLAIILVYYRVRGSIRIDQASLLK 99
[Close]
BLAST of mRNA_S-dermatodea_contig88959.16996.1 vs. uniprot
Match: A0A8F0FEY2_9PHAE (NADH dehydrogenase subunit 4L n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FEY2_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 5.980e-11
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:    1 VAACESSVGLAIILVYYRVRGSIRIDQASLLK 96
            VAACESSVGLAIILVYYRVRGSIR+DQA+LLK
Sbjct:   68 VAACESSVGLAIILVYYRVRGSIRVDQAALLK 99
[Close]
BLAST of mRNA_S-dermatodea_contig88959.16996.1 vs. uniprot
Match: E6ZER2_ECTSI (NADH-ubiquinone oxidoreductase, subunit 4L n=85 Tax=Phaeophyceae TaxID=2870 RepID=E6ZER2_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 8.490e-11
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:    1 VAACESSVGLAIILVYYRVRGSIRIDQASLLK 96
            +AACESSVGLAIILVY+RVRGSIRIDQASLLK
Sbjct:   68 IAACESSVGLAIILVYFRVRGSIRIDQASLLK 99
[Close]
BLAST of mRNA_S-dermatodea_contig88959.16996.1 vs. uniprot
Match: A0A1L2F1H7_9PHAE (Nad4L n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1H7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 8.690e-11
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:    1 VAACESSVGLAIILVYYRVRGSIRIDQASLLK 96
            VAACESS+GLAIILVY+RVRGSIRIDQASLLK
Sbjct:   69 VAACESSIGLAIILVYFRVRGSIRIDQASLLK 100
[Close]
BLAST of mRNA_S-dermatodea_contig88959.16996.1 vs. uniprot
Match: A0A8E8PEE6_9PHAE (Nad4L n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PEE6_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 6.890e-10
Identity = 27/32 (84.38%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:    1 VAACESSVGLAIILVYYRVRGSIRIDQASLLK 96
            +AACESS+GLAIILVY+RV+GSIR+DQASLLK
Sbjct:   68 IAACESSIGLAIILVYFRVKGSIRLDQASLLK 99
[Close]
BLAST of mRNA_S-dermatodea_contig88959.16996.1 vs. uniprot
Match: Q94Z11_PYLLI (NADH dehydrogenase subunit 4L n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z11_PYLLI)

HSP 1 Score: 57.4 bits (137), Expect = 9.760e-10
Identity = 27/32 (84.38%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:    1 VAACESSVGLAIILVYYRVRGSIRIDQASLLK 96
            +AACESS+GLAIILV++RVRGSIR+DQASLLK
Sbjct:   68 IAACESSIGLAIILVFFRVRGSIRLDQASLLK 99
[Close]
BLAST of mRNA_S-dermatodea_contig88959.16996.1 vs. uniprot
Match: A0A4Y5T7L0_9PHAE (NADH dehydrogenase subunit 4L n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A4Y5T7L0_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 8.830e-9
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:    1 VAACESSVGLAIILVYYRVRGSIRIDQASLLK 96
            VAACESSVGLA+ILVYYRVRGSI +D+ASLL+
Sbjct:   73 VAACESSVGLALILVYYRVRGSILLDKASLLR 104
[Close]
BLAST of mRNA_S-dermatodea_contig88959.16996.1 vs. uniprot
Match: A0A7S6ZPE7_9STRA (Nad4L n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPE7_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.820e-7
Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:    1 VAACESSVGLAIILVYYRVRGSIRIDQASLLK 96
            VA CESS+GLAIIL YYRVRG IR+++ASL+K
Sbjct:   68 VAGCESSIGLAIILAYYRVRGRIRMNEASLMK 99
[Close]
BLAST of mRNA_S-dermatodea_contig88959.16996.1 vs. uniprot
Match: Q4EA22_9RICK (NADH dehydrogenase I, K subunit n=1 Tax=Wolbachia endosymbiont of Drosophila ananassae TaxID=307502 RepID=Q4EA22_9RICK)

HSP 1 Score: 45.1 bits (105), Expect = 2.200e-5
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:    1 VAACESSVGLAIILVYYRVRGSIRIDQASLLK 96
            VAA ES VGLAI++VYYR RG+I ++QA+L+K
Sbjct:   16 VAAAESGVGLAILVVYYRSRGNIDVEQANLMK 47
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig88959.16996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A4Y5T8D2_9PHAE2.980e-1193.75NADH dehydrogenase subunit 4L n=1 Tax=Dictyopteris... [more]
Q2TUC4_DICDH2.980e-1193.75NADH dehydrogenase subunit 4L n=1 Tax=Dictyota dic... [more]
A0A8F0FEY2_9PHAE5.980e-1193.75NADH dehydrogenase subunit 4L n=1 Tax=Protohalopte... [more]
E6ZER2_ECTSI8.490e-1193.75NADH-ubiquinone oxidoreductase, subunit 4L n=85 Ta... [more]
A0A1L2F1H7_9PHAE8.690e-1193.75Nad4L n=1 Tax=Coccophora langsdorfii TaxID=74099 R... [more]
A0A8E8PEE6_9PHAE6.890e-1084.38Nad4L n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID... [more]
Q94Z11_PYLLI9.760e-1084.38NADH dehydrogenase subunit 4L n=1 Tax=Pylaiella li... [more]
A0A4Y5T7L0_9PHAE8.830e-984.38NADH dehydrogenase subunit 4L n=1 Tax=Ishige okamu... [more]
A0A7S6ZPE7_9STRA1.820e-775.00Nad4L n=1 Tax=Schizocladia ischiensis TaxID=196139... [more]
Q4EA22_9RICK2.200e-565.63NADH dehydrogenase I, K subunit n=1 Tax=Wolbachia ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig88959contigS-dermatodea_contig88959:529..630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925371.9773724-CDS-S-dermatodea_contig88959:528..6301622925371.9773724-CDS-S-dermatodea_contig88959:528..630Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88959 529..630 -
1694079888.6094904-CDS-S-dermatodea_contig88959:528..6301694079888.6094904-CDS-S-dermatodea_contig88959:528..630Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88959 529..630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig88959.16996.1prot_S-dermatodea_contig88959.16996.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig88959 529..630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig88959.16996.1

>prot_S-dermatodea_contig88959.16996.1 ID=prot_S-dermatodea_contig88959.16996.1|Name=mRNA_S-dermatodea_contig88959.16996.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=34bp
VAACESSVGLAIILVYYRVRGSIRIDQASLLKI*
back to top

mRNA from alignment at S-dermatodea_contig88959:529..630-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig88959.16996.1 ID=mRNA_S-dermatodea_contig88959.16996.1|Name=mRNA_S-dermatodea_contig88959.16996.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=102bp|location=Sequence derived from alignment at S-dermatodea_contig88959:529..630- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTGCTGCTTGTGAATCTTCTGTAGGTTTAGCTATAATTTTAGTATATTA
TAGAGTTAGAGGTAGTATTCGGATTGATCAAGCATCATTATTGAAAATTT
AA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig88959:529..630-

>mRNA_S-dermatodea_contig88959.16996.1 ID=mRNA_S-dermatodea_contig88959.16996.1|Name=mRNA_S-dermatodea_contig88959.16996.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=204bp|location=Sequence derived from alignment at S-dermatodea_contig88959:529..630- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTGCTGCTTGTGAATCTTCTGTAGGTTTAGCTATAATTTTAGTATATTA
TAGAGTTAGAGGTAGTATTCGGATTGATCAAGCATCATTATTGAAAATTT
AAGTTGCTGCTTGTGAATCTTCTGTAGGTTTAGCTATAATTTTAGTATAT
TATAGAGTTAGAGGTAGTATTCGGATTGATCAAGCATCATTATTGAAAAT
TTAA
back to top