mRNA_S-dermatodea_contig888.16991.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig888.16991.1 vs. uniprot
Match: A0A6H5LL79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL79_9PHAE) HSP 1 Score: 270 bits (690), Expect = 4.150e-78 Identity = 203/510 (39.80%), Postives = 253/510 (49.61%), Query Frame = 1
Query: 208 VMISQADFEDAARGGLGGKRDRRKVRRRPATVGMDVGHG-WSCAGRSGEQICWPRYEDICLVTAGVRGAVLLDSRRAPLSCPPLADVLRTLQDKFEERHG-----------GGCDCSGQDIECLGILRLEGTCFLVNRAVLLSRLGNLVACPEAALSGSTALSRDSAATVADEARSTSASQFVADRLWPG---GGGALGRERGF---ALLDVRKIVGVPTVCTDVLIPRLCAALRSMFSGDEIGNLQTPPTADLGGGASPEGPPAKSTR---AWDARADSTTET---SGDG------------RRWLKDWKSKELILGGKDLRKTLGGIGLPGLAGWLLEYPVIYCCPSLSE--SEQGKGEAESGDAGNCLAAAPLTVYSLLVEFGQEAARNSRDSVSS------------FEAFSFSVPETAVRCPVDFETPDESTAGGRGGGDPA------VVAALHGLVENFVERINARVALHSGSGASVGGCQEHRRWLHGLKMSKRTETLNTVAL 1569
++I +ADFE A R G + K R RP +D G WS AG S Q WPR+ D+CLV AGVR AVLLDSRRAP PPLADVL +Q +ER CDCS + CLG+L LEG+ FLVNR +L+ RL L + A + + R S+ + S + A+ + P A R G+ LLDV K + VP+ +DVL PRLCAAL F G + SP PP ++R A + A S E GDG RWL+D KELIL + L KTLG +GL GLAGWLLEYPVIYCC SL++ S G+ GNCLAA PLTVYS V+ G + S S S F+AFSFSVPET P + E ++ GG G+ AALHGLV+NFV+ I+ R+A GSG + G L + KR TL+ VAL
Sbjct: 1 MLIEEADFERACRAAGRGVAPQHKTRVRPRAAAVDSNDGDWSVAGGSRSQTFWPRFGDVCLVAAGVRCAVLLDSRRAPRGFPPLADVLLAMQHDQQERQQQKERCATRDCHSDCDCSSGGVACLGLLVLEGSSFLVNRVMLVHRLNELFSGETIAAQQADEMFRRSSTCATGCGKK---SGYEAEAVRPAVDVAASAHQRRLGWRDSTLLDVNKALAVPSDRSDVLAPRLCAALLWAFGGATVAATANSVEGGRASRPSPTPPPRGTSRESMAMETPAKSNKEDRFCGGDGVHRVLPSELEGGARWLRDLSMKELILDCESLVKTLGDVGLSGLAGWLLEYPVIYCCSSLNDGTSNGSDGKEMEHARGNCLAAVPLTVYSFAVDLGDKGRGCSSRSQPSLDERSVSATGAWFDAFSFSVPETMCG-PTETEQDEDEVNGGGACGENREERHRRTAAALHGLVDNFVQTIDRRLARLRGSGDNGNGS------FLSLNVFKRRATLDQVAL 500
BLAST of mRNA_S-dermatodea_contig888.16991.1 vs. uniprot
Match: D7FQ91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ91_ECTSI) HSP 1 Score: 268 bits (685), Expect = 2.180e-77 Identity = 203/510 (39.80%), Postives = 254/510 (49.80%), Query Frame = 1
Query: 208 VMISQADFEDAARGGLGGKRDRRKVRRRPATVGMDVGHG-WSCAGRSGEQICWPRYEDICLVTAGVRGAVLLDSRRAPLSCPPLADVLRTLQDKFEERHG-----------GGCDCSGQDIECLGILRLEGTCFLVNRAVLLSRLGNLVACPEAALSGSTALSRDSAATVAD-EARSTSASQFVADRLWPGGGGALGRERGF-----ALLDVRKIVGVPTVCTDVLIPRLCAALRSMFSGDEIGNLQTPPTADLGGGASPEGPPAKSTR---AWDARADSTTET---SGDG------------RRWLKDWKSKELILGGKDLRKTLGGIGLPGLAGWLLEYPVIYCCPSLSESEQGKGEAESGD--AGNCLAAAPLTVYSLLVEFGQEAARNSRDSVSS------------FEAFSFSVPETAVRCPVDFETPDESTAGGRGGGDPA------VVAALHGLVENFVERINARVALHSGSGASVGGCQEHRRWLHGLKMSKRTETLNTVAL 1569
++I +ADFE A R G + K R RP +D G WS AG S Q WPR+ DICL AGVR AVLLDSRRAP PPLADVL LQ +ER CDC+ + CLG+L LEG+ FLVNR +L+ RL L + A R SA D + +S ++ V + G A +R F ALLDV + VP+ +DVL PRL AAL F G + G SP PP ++R A + A S E GDG RWL+DW KEL+L + L KTLG +GL G+AGWLLEYP IYCC SL++ + + + GNCLAA PLTVYSL V+ G + +S S FEAFSFSVPE A+ P + E ++ GG G+ AALHGLV+NFV+ I+ R+A SG V G L +SKR TL+ VAL
Sbjct: 1 MLIEEADFERACRAAARGVAPQHKRRVRPRAAAVDSNDGDWSVAGGSRSQTFWPRFGDICLAAAGVRCAVLLDSRRAPRRSPPLADVLLALQHDQQERQQQKEHCATRDCHSDCDCNSGGVACLGLLVLEGSSFLVNRVMLVRRLNELFSGETIAAEPVDERFRRSATCATDCDKKSGYGTEAVRPAV---DGAASAHQRHFDRRDLALLDVNMALAVPSDRSDVLAPRLYAALLWAFGGATVAATANSVEEGRARGPSPTPPPRGTSRESTAMETSAKSNREDRFCGGDGVHRVPPSELEGGARWLRDWSMKELVLDCESLVKTLGDVGLSGMAGWLLEYPAIYCCSSLNDGTTNGSDGKEMEHARGNCLAAVPLTVYSLAVDLGDKGRGSSSRPQPSLDERSASVTGAWFEAFSFSVPE-AMCGPTETEQDEDEVNGGGACGENREERHRRTAAALHGLVDNFVQTIDRRLARLRRSG--VNGNDSFL----SLNVSKRRATLDQVAL 500
BLAST of mRNA_S-dermatodea_contig888.16991.1 vs. uniprot
Match: D7FQ90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ90_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 1.080e-9 Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = -2
Query: 2242 ARELWSEALRRGVSPRSPGYGAAIGAAVRAGDMTAAFRLVDEARGLNLEL 2391
A++LW EALRRGVSPRSPGY AA+ AA+RAGD AA +LV+EARGL LEL
Sbjct: 701 AKQLWDEALRRGVSPRSPGYDAAVSAALRAGDTAAARQLVEEARGLRLEL 750
BLAST of mRNA_S-dermatodea_contig888.16991.1 vs. uniprot
Match: A0A6H5L2A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A2_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 3.960e-9 Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = -2
Query: 2242 ARELWSEALRRGVSPRSPGYGAAIGAAVRAGDMTAAFRLVDEARGLNLEL 2391
A++LW EALRRGVSPRSPGY AA+ A+RAGD AA +LV+EARGL LEL
Sbjct: 1117 AKQLWDEALRRGVSPRSPGYDAAVSVALRAGDTAAARQLVEEARGLRLEL 1166 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig888.16991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig888.16991.1 >prot_S-dermatodea_contig888.16991.1 ID=prot_S-dermatodea_contig888.16991.1|Name=mRNA_S-dermatodea_contig888.16991.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=454bp MISQADFEDAARGGLGGKRDRRKVRRRPATVGMDVGHGWSCAGRSGEQICback to top mRNA from alignment at S-dermatodea_contig888:17430..20775- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig888.16991.1 ID=mRNA_S-dermatodea_contig888.16991.1|Name=mRNA_S-dermatodea_contig888.16991.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3346bp|location=Sequence derived from alignment at S-dermatodea_contig888:17430..20775- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig888:17430..20775- >mRNA_S-dermatodea_contig888.16991.1 ID=mRNA_S-dermatodea_contig888.16991.1|Name=mRNA_S-dermatodea_contig888.16991.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2724bp|location=Sequence derived from alignment at S-dermatodea_contig888:17430..20775- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |