mRNA_S-dermatodea_contig88769.16987.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig88769.16987.1
Unique NamemRNA_S-dermatodea_contig88769.16987.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig88769.16987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig88769contigS-dermatodea_contig88769:2..494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size493
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig88769.16987.1prot_S-dermatodea_contig88769.16987.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig88769 28..381 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925371.2621977-UTR-S-dermatodea_contig88769:1..271622925371.2621977-UTR-S-dermatodea_contig88769:1..27Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig88769 2..27 +
1694079888.060555-UTR-S-dermatodea_contig88769:1..271694079888.060555-UTR-S-dermatodea_contig88769:1..27Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig88769 2..27 +
1622925371.2866027-UTR-S-dermatodea_contig88769:381..4941622925371.2866027-UTR-S-dermatodea_contig88769:381..494Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig88769 382..494 +
1694079888.0884774-UTR-S-dermatodea_contig88769:381..4941694079888.0884774-UTR-S-dermatodea_contig88769:381..494Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig88769 382..494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925371.2745075-CDS-S-dermatodea_contig88769:27..3811622925371.2745075-CDS-S-dermatodea_contig88769:27..381Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88769 28..381 +
1694079888.0771368-CDS-S-dermatodea_contig88769:27..3811694079888.0771368-CDS-S-dermatodea_contig88769:27..381Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88769 28..381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig88769.16987.1

>prot_S-dermatodea_contig88769.16987.1 ID=prot_S-dermatodea_contig88769.16987.1|Name=mRNA_S-dermatodea_contig88769.16987.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=118bp
MLVLMMLSGAGAAAATLPRSYCGMLSGERVAVTPSLPMSGPPGCCGGCCW
RRACCCAWRKYARAAWARVNILSTSAWMQASSSTENSLSWLDMGDRSLIS
LLLTRAQSISLKVHASV*
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mRNA from alignment at S-dermatodea_contig88769:2..494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig88769.16987.1 ID=mRNA_S-dermatodea_contig88769.16987.1|Name=mRNA_S-dermatodea_contig88769.16987.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=493bp|location=Sequence derived from alignment at S-dermatodea_contig88769:2..494+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCAACCCTGCCGAGGTCATTGGCGATGCTGGTGTTGATGATGCTCTCG
GGGGCTGGCGCTGCTGCTGCAACCTTGCCGAGGTCATATTGCGGGATGCT
TTCGGGCGAGAGGGTGGCAGTGACCCCCTCGCTGCCGATGTCCGGACCTC
CAGGCTGCTGTGGAGGTTGTTGTTGGCGCCGCGCATGCTGTTGTGCTTGG
CGTAAGTATGCAAGGGCTGCGTGGGCCCGTGTTAATATTCTTTCGACTTC
CGCTTGGATGCAGGCTTCATCGTCCACTGAAAACTCGCTTTCGTGGTTGG
ACATGGGTGATCGCTCGCTGATCTCTCTCCTGCTGACCCGGGCCCAATCA
ATCTCCTTGAAGGTACACGCTAGCGTGTAGGATGGACTGGACGGGGCTCT
GCTGGTGGAGTGGTGTATGTATGTAGATGTGTACAGGAGTGCTTAGAAAC
TCTATATATATTTGACGTCCGCAGGCGAAGAGCTGCTGGGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig88769:2..494+

>mRNA_S-dermatodea_contig88769.16987.1 ID=mRNA_S-dermatodea_contig88769.16987.1|Name=mRNA_S-dermatodea_contig88769.16987.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig88769:2..494+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGGTGTTGATGATGCTCTCGGGGGCTGGCGCTGCTGCTGCAACCTT
GCCGAGGTCATATTGCGGGATGCTTTCGGGCGAGAGGGTGGCAGTGACCC
CCTCGCTGCCGATGTCCGGACCTCCAGGCTGCTGTGGAGGTTGTTGTTGG
CGCCGCGCATGCTGTTGTGCTTGGCGTAAGTATGCAAGGGCTGCGTGGGC
CCGTGTTAATATTCTTTCGACTTCCGCTTGGATGCAGGCTTCATCGTCCA
CTGAAAACTCGCTTTCGTGGTTGGACATGGGTGATCGCTCGCTGATCTCT
CTCCTGCTGACCCGGGCCCAATCAATCTCCTTGAAGGTACACGCTAGCGT
GTAGATGCTGGTGTTGATGATGCTCTCGGGGGCTGGCGCTGCTGCTGCAA
CCTTGCCGAGGTCATATTGCGGGATGCTTTCGGGCGAGAGGGTGGCAGTG
ACCCCCTCGCTGCCGATGTCCGGACCTCCAGGCTGCTGTGGAGGTTGTTG
TTGGCGCCGCGCATGCTGTTGTGCTTGGCGTAAGTATGCAAGGGCTGCGT
GGGCCCGTGTTAATATTCTTTCGACTTCCGCTTGGATGCAGGCTTCATCG
TCCACTGAAAACTCGCTTTCGTGGTTGGACATGGGTGATCGCTCGCTGAT
CTCTCTCCTGCTGACCCGGGCCCAATCAATCTCCTTGAAGGTACACGCTA
GCGTGTAG
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