mRNA_S-dermatodea_contig886.16983.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig886.16983.1
Unique NamemRNA_S-dermatodea_contig886.16983.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig886.16983.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 2.610e-63
Identity = 106/113 (93.81%), Postives = 111/113 (98.23%), Query Frame = 1 
Query:    1 YFEEALKMRCLLEEFRRGTARRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLCVRMHYGHPDLFDKVFFMTAGGISKASKGINLSEDIFAGYNGTIRGGKV 339
            YFEEALKMRCLLEEFR GTARRPAV+VGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPL VRMHYGHPDLFDKVFFMTAGG+SKAS+GINLSEDIFAGYNGTIRGG++
Sbjct: 1500 YFEEALKMRCLLEEFRGGTARRPAVVVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLRVRMHYGHPDLFDKVFFMTAGGVSKASRGINLSEDIFAGYNGTIRGGQI 1612
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BLAST of mRNA_S-dermatodea_contig886.16983.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA)

HSP 1 Score: 187 bits (476), Expect = 6.120e-53
Identity = 94/113 (83.19%), Postives = 102/113 (90.27%), Query Frame = 1 
Query:    1 YFEEALKMRCLLEEFRRGTARRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLCVRMHYGHPDLFDKVFFMTAGGISKASKGINLSEDIFAGYNGTIRGGKV 339
            YFEEA+KMRCLL+EF R     P  IVGFREHIFTGSVSSLANYMALQELSFVT+GQRVL++PL +RMHYGHPDLFDKVFFMT GG+SKASKGINLSEDIFAGYN TIRGG+V
Sbjct: 1211 YFEEAIKMRCLLQEFLR-KRDPPTTIVGFREHIFTGSVSSLANYMALQELSFVTIGQRVLDDPLRIRMHYGHPDLFDKVFFMTRGGMSKASKGINLSEDIFAGYNNTIRGGQV 1322
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BLAST of mRNA_S-dermatodea_contig886.16983.1 vs. uniprot
Match: A0A7S2X7C3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X7C3_9EUKA)

HSP 1 Score: 169 bits (429), Expect = 8.760e-52
Identity = 82/110 (74.55%), Postives = 96/110 (87.27%), Query Frame = 1 
Query:    1 YFEEALKMRCLLEEFRRGTARRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLCVRMHYGHPDLFDKVFFMTAGGISKASKGINLSEDIFAGYNGTIRG 330
            YFEEA+KMR LLEEF R  +R+   IVGFREHIFTG +SS+ANYMA+QE  FVTLGQRVL++PL +R+HYGHPDLFDK+F+MT GGISKASKGINLSEDIFAG+N  +RG
Sbjct:   63 YFEEAVKMRNLLEEFDRDDSRKHTTIVGFREHIFTGGLSSVANYMAMQEGCFVTLGQRVLHDPLKIRLHYGHPDLFDKLFYMTRGGISKASKGINLSEDIFAGFNTVLRG 172
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BLAST of mRNA_S-dermatodea_contig886.16983.1 vs. uniprot
Match: A0A7S2UV62_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA)

HSP 1 Score: 184 bits (467), Expect = 9.960e-52
Identity = 91/113 (80.53%), Postives = 99/113 (87.61%), Query Frame = 1 
Query:    1 YFEEALKMRCLLEEFRRGTARRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLCVRMHYGHPDLFDKVFFMTAGGISKASKGINLSEDIFAGYNGTIRGGKV 339
            YFEEALKMR LL+EF + T   P  I+GFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPL  R+HYGHPD+FDK+FFMT GGISKASKGINLSEDIFAG+N  +RGG V
Sbjct:  987 YFEEALKMRNLLQEFHKSTRDVPITILGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLRQRLHYGHPDIFDKLFFMTRGGISKASKGINLSEDIFAGFNNQLRGGNV 1099
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BLAST of mRNA_S-dermatodea_contig886.16983.1 vs. uniprot
Match: A0A7S0GHQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHQ8_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.380e-50
Identity = 88/116 (75.86%), Postives = 99/116 (85.34%), Query Frame = 1 
Query:    1 YFEEALKMRCLLEEF---RRGTARRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLCVRMHYGHPDLFDKVFFMTAGGISKASKGINLSEDIFAGYNGTIRGGKV 339
            YFEEA+KMR  L+EF   +RG    P  I+G REHIFTGSVSSLANYMALQE SFVTLGQRVL NPLC+R+HYGHPD+FDK+FFMT GG+SKASKGINLSEDIFAGY+  IRGG+V
Sbjct:    1 YFEEAMKMRNALQEFCPSKRGAL--PMTILGLREHIFTGSVSSLANYMALQETSFVTLGQRVLTNPLCMRLHYGHPDVFDKLFFMTRGGVSKASKGINLSEDIFAGYSNVIRGGQV 114
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BLAST of mRNA_S-dermatodea_contig886.16983.1 vs. uniprot
Match: A0A7S2QVX6_9STRA (1,3-beta-glucan synthase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVX6_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.640e-50
Identity = 90/115 (78.26%), Postives = 99/115 (86.09%), Query Frame = 1 
Query:    1 YFEEALKMRCLLEEFR--RGTARRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLCVRMHYGHPDLFDKVFFMTAGGISKASKGINLSEDIFAGYNGTIRGGKV 339
            +FEEALKMR LL+EF   +G+   P  IVGFREHIFTGSVSSLANYMALQE SFVTLGQRVLN PLC R+HYGHPD+FDK+FFMT GG+SKASKGINLSEDIFAGYN  +RGG V
Sbjct: 1431 FFEEALKMRNLLQEFDHGKGSEGMPTTIVGFREHIFTGSVSSLANYMALQETSFVTLGQRVLNKPLCSRLHYGHPDVFDKLFFMTRGGVSKASKGINLSEDIFAGYNNLVRGGGV 1545
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BLAST of mRNA_S-dermatodea_contig886.16983.1 vs. uniprot
Match: A0A7S1FM30_9STRA (1,3-beta-glucan synthase n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FM30_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.230e-50
Identity = 88/113 (77.88%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:    1 YFEEALKMRCLLEEFRRGTARRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLCVRMHYGHPDLFDKVFFMTAGGISKASKGINLSEDIFAGYNGTIRGGKV 339
            YFEEALKMR  L+EF       P  I+G REHIFTGSVSSLANYMALQE SFVTLGQRVLNNPLC+R+HYGHPD+FDK+FFMT GGISK+SKGINLSEDIFAGYN  +RGG V
Sbjct: 1409 YFEEALKMRNALQEFPLHRGPLPMTILGLREHIFTGSVSSLANYMALQETSFVTLGQRVLNNPLCIRLHYGHPDVFDKLFFMTRGGISKSSKGINLSEDIFAGYNNVVRGGAV 1521
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BLAST of mRNA_S-dermatodea_contig886.16983.1 vs. uniprot
Match: B8CDT6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDT6_THAPS)

HSP 1 Score: 177 bits (450), Expect = 4.090e-50
Identity = 86/113 (76.11%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:    1 YFEEALKMRCLLEEFRRGTARRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLCVRMHYGHPDLFDKVFFMTAGGISKASKGINLSEDIFAGYNGTIRGGKV 339
            YFEEALKMR  L+EF +     P  I+G REHIFTGSVSSLANYMALQE SFVTLGQRVL  PLC+R+HYGHPD+FDK+FF+T GGISK+SKGINLSEDIFAGYN  IRGG+V
Sbjct:  253 YFEEALKMRNALQEFAKRDGPMPITILGLREHIFTGSVSSLANYMALQETSFVTLGQRVLTKPLCIRLHYGHPDVFDKLFFITRGGISKSSKGINLSEDIFAGYNNAIRGGQV 365
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BLAST of mRNA_S-dermatodea_contig886.16983.1 vs. uniprot
Match: K0RK06_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RK06_THAOC)

HSP 1 Score: 177 bits (450), Expect = 1.930e-49
Identity = 86/113 (76.11%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:    1 YFEEALKMRCLLEEFRRGTARRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLCVRMHYGHPDLFDKVFFMTAGGISKASKGINLSEDIFAGYNGTIRGGKV 339
            YFEEALKMR  L+EF +     P  I+G REHIFTGSVSSLANYMALQE SFVTLGQRVL  PLC+R+HYGHPD+FDK+FF+T GGISK+SKGINLSEDIFAGYN  IRGG+V
Sbjct:  616 YFEEALKMRNALQEFAKRDGPMPITILGLREHIFTGSVSSLANYMALQETSFVTLGQRVLTKPLCIRLHYGHPDVFDKLFFITRGGISKSSKGINLSEDIFAGYNNAIRGGQV 728
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BLAST of mRNA_S-dermatodea_contig886.16983.1 vs. uniprot
Match: A0A7S4R501_9STRA (1,3-beta-glucan synthase (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R501_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.960e-49
Identity = 86/113 (76.11%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:    1 YFEEALKMRCLLEEFRRGTARRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLCVRMHYGHPDLFDKVFFMTAGGISKASKGINLSEDIFAGYNGTIRGGKV 339
            YFEEALKMR  L+EF +     P  I+G REHIFTGSVSSLANYMALQE SFVTLGQRVL  PLC+R+HYGHPD+FDK+FF+T GGISK+SKGINLSEDIFAGYN  IRGG+V
Sbjct: 1442 YFEEALKMRNALQEFAKRDGPLPTTILGLREHIFTGSVSSLANYMALQETSFVTLGQRVLTKPLCIRLHYGHPDVFDKLFFITRGGISKSSKGINLSEDIFAGYNNAIRGGQV 1554
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig886.16983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFR3_9PHAE2.610e-6393.811,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]
A0A835Z4B5_9STRA6.120e-5383.191,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A7S2X7C3_9EUKA8.760e-5274.55Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S2UV62_9STRA9.960e-5280.53Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0GHQ8_9STRA1.380e-5075.86Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S2QVX6_9STRA1.640e-5078.261,3-beta-glucan synthase (Fragment) n=1 Tax=Tripar... [more]
A0A7S1FM30_9STRA2.230e-5077.881,3-beta-glucan synthase n=4 Tax=Corethron hystrix... [more]
B8CDT6_THAPS4.090e-5076.11Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K0RK06_THAOC1.930e-4976.11Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4R501_9STRA1.960e-4976.111,3-beta-glucan synthase (Fragment) n=2 Tax=Ditylu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig886contigS-dermatodea_contig886:24365..24703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue7.3e-39
Seed eggNOG ortholog42099.EPrPV00000018424
KEGG koko:K11000
EggNOG free text desc.Callose synthase. Source PGD
EggNOG OGs1MEIK@121069,KOG0916@1,KOG0916@2759
COG Functional cat.M
CAZyGT48
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925371.0176637-CDS-S-dermatodea_contig886:24364..246821622925371.0176637-CDS-S-dermatodea_contig886:24364..24682Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig886 24365..24682 -
1694079887.8968225-CDS-S-dermatodea_contig886:24364..246821694079887.8968225-CDS-S-dermatodea_contig886:24364..24682Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig886 24365..24682 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925371.0326235-UTR-S-dermatodea_contig886:24682..247031622925371.0326235-UTR-S-dermatodea_contig886:24682..24703Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig886 24683..24703 -
1694079887.9090414-UTR-S-dermatodea_contig886:24682..247031694079887.9090414-UTR-S-dermatodea_contig886:24682..24703Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig886 24683..24703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig886.16983.1prot_S-dermatodea_contig886.16983.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig886 24365..24682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig886.16983.1

>prot_S-dermatodea_contig886.16983.1 ID=prot_S-dermatodea_contig886.16983.1|Name=mRNA_S-dermatodea_contig886.16983.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
MRCLLEEFRRGTARRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQ
RVLNNPLCVRMHYGHPDLFDKVFFMTAGGISKASKGINLSEDIFAGYNGT
IRGGKV
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mRNA from alignment at S-dermatodea_contig886:24365..24703-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig886.16983.1 ID=mRNA_S-dermatodea_contig886.16983.1|Name=mRNA_S-dermatodea_contig886.16983.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at S-dermatodea_contig886:24365..24703- (Saccorhiza dermatodea SderLu1190fm monoicous)
TACTTCGAGGAGGCCCTGAAGATGAGATGCCTGCTGGAGGAATTCCGCCG
CGGCACCGCCCGCCGCCCGGCCGTCATCGTCGGTTTCCGCGAGCACATCT
TCACCGGAAGCGTCAGCTCCCTTGCAAACTACATGGCCCTACAGGAGCTG
TCCTTCGTGACCCTGGGGCAGCGCGTGTTGAACAACCCCCTGTGCGTCCG
CATGCACTATGGCCACCCCGACCTGTTCGACAAGGTCTTCTTCATGACGG
CGGGGGGCATCAGCAAGGCTTCCAAGGGGATCAACCTGTCGGAAGATATT
TTCGCTGGCTACAACGGGACGATTCGCGGCGGAAAGGTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig886:24365..24703-

>mRNA_S-dermatodea_contig886.16983.1 ID=mRNA_S-dermatodea_contig886.16983.1|Name=mRNA_S-dermatodea_contig886.16983.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig886:24365..24703- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGATGCCTGCTGGAGGAATTCCGCCGCGGCACCGCCCGCCGCCCGGC
CGTCATCGTCGGTTTCCGCGAGCACATCTTCACCGGAAGCGTCAGCTCCC
TTGCAAACTACATGGCCCTACAGGAGCTGTCCTTCGTGACCCTGGGGCAG
CGCGTGTTGAACAACCCCCTGTGCGTCCGCATGCACTATGGCCACCCCGA
CCTGTTCGACAAGGTCTTCTTCATGACGGCGGGGGGCATCAGCAAGGCTT
CCAAGGGGATCAACCTGTCGGAAGATATTTTCGCTGGCTACAACGGGACG
ATTCGCGGCGGAAAGGTAATGAGATGCCTGCTGGAGGAATTCCGCCGCGG
CACCGCCCGCCGCCCGGCCGTCATCGTCGGTTTCCGCGAGCACATCTTCA
CCGGAAGCGTCAGCTCCCTTGCAAACTACATGGCCCTACAGGAGCTGTCC
TTCGTGACCCTGGGGCAGCGCGTGTTGAACAACCCCCTGTGCGTCCGCAT
GCACTATGGCCACCCCGACCTGTTCGACAAGGTCTTCTTCATGACGGCGG
GGGGCATCAGCAAGGCTTCCAAGGGGATCAACCTGTCGGAAGATATTTTC
GCTGGCTACAACGGGACGATTCGCGGCGGAAAGGTA
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