mRNA_S-dermatodea_contig8852.16974.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8852.16974.1
Unique NamemRNA_S-dermatodea_contig8852.16974.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8852.16974.1 vs. uniprot
Match: A0A2Z4BXC0_SACJA (Mannitol-1-phosphatase 2 n=2 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4BXC0_SACJA)

HSP 1 Score: 225 bits (574), Expect = 1.330e-71
Identity = 111/120 (92.50%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:    1 KVHSGESDFDPPRFKPNPSVYLKAAETEGKAPINCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPEYKKETHALMLMAGGRADNGKGAEIVISDMTDLIKIIDFFAGEKTAGKSAPFDF 360
            KVHSGESDFDPPRFKPNPSVYLKAAETEGK P+NCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPEYKK+THA MLMAGGRA+NGKGAEIVISDM DL+KIIDFFAG KTAGK APFDF
Sbjct:  189 KVHSGESDFDPPRFKPNPSVYLKAAETEGKEPVNCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPEYKKDTHAEMLMAGGRAENGKGAEIVISDMKDLLKIIDFFAGAKTAGKLAPFDF 308
[Close]
BLAST of mRNA_S-dermatodea_contig8852.16974.1 vs. uniprot
Match: A0A6H5KNB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB9_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 1.700e-71
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:    1 KVHSGESDFDPPRFKPNPSVYLKAAETEGKAPINCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPEYKKETHALMLMAGGRADNGKGAEIVISDMTDLIKIIDFFAGEKTAGKSAPFDF 360
            KVHSGESDFDPPRFKPNPSVYLKAAETEGK P NCIAVEDSGSGVGSASNAGVGLTVGYVGASHIP+YK +THA MLM+GGRA+NGKGAEIVISDMTDL+K+I+FFAGEK AGKSAPFDF
Sbjct:   95 KVHSGESDFDPPRFKPNPSVYLKAAETEGKEPANCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPDYKMDTHAEMLMSGGRAENGKGAEIVISDMTDLLKVIEFFAGEKIAGKSAPFDF 214
[Close]
BLAST of mRNA_S-dermatodea_contig8852.16974.1 vs. uniprot
Match: D8LC90_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC90_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 2.150e-70
Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:    1 KVHSGESDFDPPRFKPNPSVYLKAAETEGKAPINCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPEYKKETHALMLMAGGRADNGKGAEIVISDMTDLIKIIDFFAGEKTAGKSAPFDF 360
            KVHSGESDFDPPRFKPNPSVYLKAAETEGK P NCIAVEDSGSGVGSASNAGVGLTVGYVGASHIP+YKK+THA MLM+GGRA+NGKGAEIVISDMTDL K+I+FFAGEK AGKSAPFDF
Sbjct:  189 KVHSGESDFDPPRFKPNPSVYLKAAETEGKEPANCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPDYKKDTHAEMLMSGGRAENGKGAEIVISDMTDLPKVIEFFAGEKIAGKSAPFDF 308
[Close]
BLAST of mRNA_S-dermatodea_contig8852.16974.1 vs. uniprot
Match: A0A835ZES5_9STRA (Haloacid dehalogenase-like hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES5_9STRA)

HSP 1 Score: 171 bits (433), Expect = 2.220e-50
Identity = 84/120 (70.00%), Postives = 102/120 (85.00%), Query Frame = 1 
Query:    1 KVHSGESDFDPPRFKPNPSVYLKAAETEGKAPINCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPEYKKETHALMLMAGGRADNGKGAEIVISDMTDLIKIIDFFAGEKTAGKSAPFDF 360
            KVHSGESDF PP+FKP P VYLKAA++EGK P +C+AVEDSGSGVGSA+NAGVG+ VGYVGASHI E KK++HA MLM+G R+ +G+GA+IVIS+M DL K+I FF  ++ AGKSAPF F
Sbjct:  183 KVHSGESDFTPPKFKPAPDVYLKAAKSEGKPPHDCVAVEDSGSGVGSAANAGVGMIVGYVGASHIREDKKDSHAKMLMSGDRSKDGRGADIVISNMRDLPKVIAFFKDQRGAGKSAPFTF 302
[Close]
BLAST of mRNA_S-dermatodea_contig8852.16974.1 vs. uniprot
Match: A0A7S2V246_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V246_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.180e-45
Identity = 79/116 (68.10%), Postives = 92/116 (79.31%), Query Frame = 1 
Query:    1 KVHSGESDFDPPRFKPNPSVYLKAAETEGKAPINCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPEYKKETHALMLMAGGRADNGKGAEIVISDMTDLIKIIDFFAGEKTAGKSA 348
            KVHSGESDF PP FKP+P+VYLKAA+ E   P NC+AVEDS SGVGSASNAG+GL VGYVGASHIPE KKE+HA  LMAG RA +G+GAEIV+ DMTDL  ++  + G K +G  A
Sbjct:  233 KVHSGESDFTPPEFKPSPAVYLKAAQAESCDPTNCVAVEDSASGVGSASNAGIGLIVGYVGASHIPEEKKESHAASLMAGKRATSGRGAEIVLQDMTDLPTVVLAYQGMKKSGSGA 348
[Close]
BLAST of mRNA_S-dermatodea_contig8852.16974.1 vs. uniprot
Match: A0A7S0A6C5_9DINO (Hypothetical protein n=2 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A6C5_9DINO)

HSP 1 Score: 140 bits (353), Expect = 1.690e-40
Identity = 71/114 (62.28%), Postives = 85/114 (74.56%), Query Frame = 1 
Query:    4 VHSGESDFDPPRFKPNPSVYLKAAETEGKAPINCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPEYKKETHALMLMAGGRADNGKGAEIVISDMTDLIKIIDFFAGEKTAGKS 345
            +HSGESDFDPPRFKP P VYL+AA      P  C+AVEDS SGVGSASNAG+GL VGYVGASHI   +KE HA MLM G RA+N +GA+IV+ DM DL +++  FA    AG++
Sbjct:    4 IHSGESDFDPPRFKPAPDVYLRAASHVKLPPSQCVAVEDSASGVGSASNAGIGLIVGYVGASHIAPDQKEPHARMLMKGTRAENRRGADIVLLDMRDLPRVVRHFATLLAAGRA 117
[Close]
BLAST of mRNA_S-dermatodea_contig8852.16974.1 vs. uniprot
Match: C1MV72_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MV72_MICPC)

HSP 1 Score: 147 bits (370), Expect = 1.750e-40
Identity = 71/107 (66.36%), Postives = 88/107 (82.24%), Query Frame = 1 
Query:    1 KVHSGESDFDPPRFKPNPSVYLKAAETEGKAPINCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPEYKKETHALMLMAGGRADNGKGAEIVISDMTDLIKIIDFFA 321
            K+HSGESDFDPPRFKP+PSVYL AA++E   P NC+AVEDS SGVGSA+NA VGL VGYVG +HI E +K +HA  L AGGR+D+G+GA+IVI DM DL+ +++ FA
Sbjct:  232 KIHSGESDFDPPRFKPDPSVYLLAAKSEDADPKNCVAVEDSTSGVGSAANANVGLIVGYVGGTHITEDRKTSHAGTLTAGGRSDDGRGADIVIRDMVDLVPLVETFA 338
[Close]
BLAST of mRNA_S-dermatodea_contig8852.16974.1 vs. uniprot
Match: A0A7S0SIL2_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SIL2_9CHLO)

HSP 1 Score: 147 bits (370), Expect = 2.240e-40
Identity = 71/116 (61.21%), Postives = 87/116 (75.00%), Query Frame = 1 
Query:    4 VHSGESDFDPPRFKPNPSVYLKAAETEGKAPINCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPEYKKETHALMLMAGGRADNGKGAEIVISDMTDLIKIIDFFAGEKTAGKSAP 351
            +HSGESDFDPPRFKP+P+VYL AAE     P NCIAVEDS SGVGSA+NAG+G+ VGYVG SHI    +E HA  LMAGGR+++G+GA+IVI DM DL+ +  FF  +   G+  P
Sbjct:  236 IHSGESDFDPPRFKPDPAVYLLAAEKTNALPKNCIAVEDSTSGVGSAANAGLGMIVGYVGGSHISAENEEGHAATLMAGGRSESGRGADIVIRDMKDLVPLTQFFTSQVVTGEFPP 351
[Close]
BLAST of mRNA_S-dermatodea_contig8852.16974.1 vs. uniprot
Match: A0A6S9FK33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FK33_HETAK)

HSP 1 Score: 145 bits (366), Expect = 8.570e-40
Identity = 72/114 (63.16%), Postives = 89/114 (78.07%), Query Frame = 1 
Query:    1 KVHSGESDFDPPRFKPNPSVYLKAAETEGKAPINCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPEYKKETHALMLMAGGRADNGKGAEIVISDMTDLIKIIDFFAGEKTAGK 342
            KV SGESDFDPPRFKP+P+VYL AAE EG+ P  CIAVEDS SGVGSASNA +GL VGYVG+SHIP  KK +HA  L+AG RA++G+GA++V+ D  DL+ I+  F   + AG+
Sbjct:  236 KVWSGESDFDPPRFKPDPAVYLLAAEKEGQVPSMCIAVEDSASGVGSASNAKMGLIVGYVGSSHIPAEKKASHAAELIAGTRAEDGRGADLVVHDFADLLPIVAAFQASRDAGE 349
[Close]
BLAST of mRNA_S-dermatodea_contig8852.16974.1 vs. uniprot
Match: A0A061S8D2_9CHLO (Had-superfamily hydrolase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S8D2_9CHLO)

HSP 1 Score: 145 bits (365), Expect = 1.140e-39
Identity = 74/117 (63.25%), Postives = 88/117 (75.21%), Query Frame = 1 
Query:    1 KVHSGESDFDPPRFKPNPSVYLKAAETEGKAPINCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPEYKKETHALMLMAGGRADNGKGAEIVISDMTDLIKIIDFFAGEKTAGKSAP 351
            K+HSGESDFDPPRFKP+PSVYL AAE+E     +CIAVEDS SGVGSASNAGVG+ VGYVGASHI E   ++HA MLM G +ADNG GA+IVI D +DL+ ++  F     A +  P
Sbjct:  241 KIHSGESDFDPPRFKPDPSVYLLAAESEAAKIEDCIAVEDSASGVGSASNAGVGMIVGYVGASHIKEAVIDSHAKMLMDGTKADNGIGADIVIEDFSDLLTLVSLFQEMDRARRPVP 357
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8852.16974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z4BXC0_SACJA1.330e-7192.50Mannitol-1-phosphatase 2 n=2 Tax=Saccharina japoni... [more]
A0A6H5KNB9_9PHAE1.700e-7190.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LC90_ECTSI2.150e-7090.83Haloacid dehalogenase-like hydrolase n=1 Tax=Ectoc... [more]
A0A835ZES5_9STRA2.220e-5070.00Haloacid dehalogenase-like hydrolase n=1 Tax=Tribo... [more]
A0A7S2V246_9STRA2.180e-4568.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0A6C5_9DINO1.690e-4062.28Hypothetical protein n=2 Tax=Pyrodinium bahamense ... [more]
C1MV72_MICPC1.750e-4066.36Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7S0SIL2_9CHLO2.240e-4061.21Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A6S9FK33_HETAK8.570e-4063.16Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A061S8D2_9CHLO1.140e-3963.25Had-superfamily hydrolase n=1 Tax=Tetraselmis sp. ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8852contigS-dermatodea_contig8852:4637..8870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score222.6
Seed ortholog evalue9.7e-56
Seed eggNOG ortholog2880.D8LC90
EggNOG OGs28KFC@1,2QSWC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHaloacid dehalogenase-like hydrolase
Ec32 orthologEc-14_005660.1
Exons2
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925370.1627085-CDS-S-dermatodea_contig8852:4636..48361622925370.1627085-CDS-S-dermatodea_contig8852:4636..4836Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8852 4637..4836 -
1694079887.274519-CDS-S-dermatodea_contig8852:4636..48361694079887.274519-CDS-S-dermatodea_contig8852:4636..4836Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8852 4637..4836 -
1622925370.1763222-CDS-S-dermatodea_contig8852:8710..88701622925370.1763222-CDS-S-dermatodea_contig8852:8710..8870Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8852 8711..8870 -
1694079887.2851553-CDS-S-dermatodea_contig8852:8710..88701694079887.2851553-CDS-S-dermatodea_contig8852:8710..8870Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8852 8711..8870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8852.16974.1prot_S-dermatodea_contig8852.16974.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8852 4637..8870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8852.16974.1

>prot_S-dermatodea_contig8852.16974.1 ID=prot_S-dermatodea_contig8852.16974.1|Name=mRNA_S-dermatodea_contig8852.16974.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
KVHSGESDFDPPRFKPNPSVYLKAAETEGKAPINCIAVEDSGSGVGSASN
AGVGLTVGYVGASHIPEYKKETHALMLMAGGRADNGKGAEIVISDMTDLI
KIIDFFAGEKTAGKSAPFDF
back to top

mRNA from alignment at S-dermatodea_contig8852:4637..8870-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8852.16974.1 ID=mRNA_S-dermatodea_contig8852.16974.1|Name=mRNA_S-dermatodea_contig8852.16974.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4234bp|location=Sequence derived from alignment at S-dermatodea_contig8852:4637..8870- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGTTCACAGTGGCGAGAGCGACTTCGACCCCCCGAGGTTCAAGCCGAA
CCCGTCGGTGTACCTAAAGGCGGCGGAGACGGAGGGCAAGGCGCCCATCA
ATTGCATCGCGGTGGAGGACAGCGGTTCCGGCGTGGGGTCGGCTTCCAAC
GCTGGTGTCGGTGAGGAGAAAGCCTTTTTTCTTTTCTTTTTCAGAAAGCA
GGCATCAATATGTTGAGTGTGCGTCAATCGTGGTCGTGATCGTGGCCGTA
GTTGGTGTTGGTTTGATAATTGATATGGTGGTGGTGGCGATTTCCAACTA
TTAACCATTTGGGACTAGGCCCGATTTGTCGGGGTGTCGTACCATCTGTC
CACACCGTCTTTTTACGTCCGACAGTTACGATATATGCCCGACGGCGACT
ATTCTTCCCCGTATCATACTGGCGGCAGAAGAGCGGCAGGCACCCTGCCG
TCAACGCTTAATAATAGCTCGGACTTGGCGTGCAGCCTTCAACTCAATAA
TCCGGTAACGTAAGAGGCGATATTCAGCGAGAACGCACTCAGTAGCTCTC
AAAGATTTAAAACATTGGCCTGTTGCTTTTCGGTTGTGGTTTGTGGTTTT
GTTGACTGTTCCCATGGCAAATCAAACAAACACCCGGCATTGCGCACTAC
CCGGGCGGCCTTTTTTGTTTTCTTCGTAAAAGCGTCACGCTTCTCTTGAA
GCCTAGCGCCCCCCACCCACCCACCCACCCCCATCCGACTCGGCTGGACG
GAATTGGGGCGAAGGACGCCTGCTGGTCGCGCGACGTGCAGCTCATCCGA
CACGCCCAGTCGCTCGAGGACAACCATCCGGTCGGCTGCTGTGGTATATC
ATGATATCATGTATCGTAGGCGACCTTTCGCCGCGGGAAATTTGTTGTTG
TTGTGATTTGACAGTTCAAACTCTCATGTGGTTGCGACCCCACCATGACT
ATTTACCGTGATGCCCCCCACCCCCTCTCATGGTGCTTCCTTCGGCCCGT
GGTAAATAGGCCGTATAGGCCTGCAGGACACCTGGTGTAACCTAACGTCG
TCGGGGGGCGAATGTCGGCCTGGCTCTTATACCCGCGGCATATACAGATA
ACACAGTCGATGTTAATCGGTTCGGAATTGCAATTTGTCTAGGACCTTCA
CATGCCCGGCATTTTTACACATGTCTTTTCACAGTCCCAATGCCACAACC
GGCTTTCGGTTCGGCCCTGTCAGATTTTCAAATCTCAACACCGGCACTGG
TTCGGCACTACTGTCATAAATTTGACTTTTCTGACCGGCACTGGATATTA
GTATGCGTAATTATAGAGGGCACGTGTAATTCCCATGTAGGACATGTGAA
AAGACACGTGTATGATCGTACAGTGCCGGTTTTCGGTTCGGCACTGCTGA
CCGCCCTCCCCGTGGTTGAACTGGTTGACCAACAGCCCAGTAGGCGGAGG
ACCCGGGTTCAAAATCCTGGCAGAGTCGATGCTTGTTTATTTCTCTACCT
CCGCCGCGGAAAGCGCGAGAGCGTGAGGAAGCAAAACACCCGAGAAATCG
GCGAGCTATGCGAGTGCCGAACCCAATGCATTCGCGATAAAAACCAAAGG
TTAGAACCGGGGAGAGATGGGATGGCCCCTTGTGACCACAGACGAACCTC
GGAAAAGCAAGTCTATCATATGTGTGCCAACAACAACGACAACAACAACT
GCCTGTGAGATTTGTATTTACAAAAACCGGCACTGGTTCGGCACTGTGTG
ATCTTGAGCCGGTTCTGGTTCGGTACTGTCAGATTTTCGCGGGCATGTGG
AGGCCCCTTCAATCTTTTAGTCCGCTTTCCACACGAAGGCAAATGCTCAC
CCCCCTCGTCCTCTTGAGGACGCGTGGTCAAAGGTCTAACAGCTAAGGCA
TTCAAAATACGAGTACCCCCCCCCCCCACGCAGATAAAAAAAATATTTGT
CGAAACATCAAAGGAGCCTTGGGGTCTTAACTCGCCTGAAACAGCACATA
ATGTCTTATACATAAGAGCGAGCCTTGGGGTCGAGTTTTTGTTAAAGGGG
GGCATACGTTCAAAGCTCCACCTACGGAGGTTTTACGTAACTTATGATGC
TACGGTTTACGTTGTGTATGATGTCATGCCAACTCCCCCCCTCCCTTCCC
TGTGCCCCCCCCTGGGGGGCCTAGCTCAATGTTTTCTCGCAAAGGGCATG
TCGGCTTTCAACCCCCCTCCCATGCTGCCCGGCCGAGAAGCACGAGCGAA
GGGCCGTCCAGAATACGTTGCAGTCGGCCAGCGTTGTTTCTGAAAATTAT
CCATGGAACACTCCGCATAGAGCTATATAGAGCTACTATATGTCTTCATT
AGTTGATAGCGTTTTTAACGTTTTTGAATACTGTAGCGATTTATAGTTGT
CCCTTGAAGCCTTATCACTAGGGCTTTAGAGTTGACTTGTTGACGTGTTT
TCCCACACTCCTGCTTGTTTTTCACAGCATGCCCACCACACACAGTCCTC
GCGGTGCGCGTGCTCGCCTCGCCCGCGGGCTCGCTCGCCAGTCTCTTCCT
ACCAACACACACCTCACGGGCGTAGCCGTGGCTACTCGCTATTTAGTCCT
TTATACTGCTTTCAACGTTTTTTCCACACTATTTCCTGTACAATTTTGAG
GCCGATATCGTACGCTAAGTCCTATACGATTTCGAGGCCAAACAACTTGA
TGTATGTGTTGAGCGCCAAGTGTTGAAGACACTAGGATTTTTCACCTCAC
GGGCGTAGCCGTGGCTACCTACTATTAATAGTATACTAGTAGGTGGCCAC
GGCTACGCCCGTTAGGTGTGTGTTGGCAGGACGATATTCCGATGGCGGTA
GTACCCACGGCAGGCGTTCACCCACGGAGAAAGATGAGCGTGCAAGAAGG
GACTGGCTGCTCCTGCTATGTGTGTGCAGTGGTGCGTTTTGTGGGCTGTC
TTCATCGAGCAGAGGGAGAGGCAAAGGAATAGGTGATGACAAAAGTAGGA
ATAAATCCACGAAAAAGCAAAGCAAAAGACGGTTTCAAGTTATACACCAA
TATATCATAACCTATCGATATGGGTGTCGACAGACAGAGAGAGGTTGCTC
GATGAGAGAGGTCAGATTGCTTAGCACATGAGGAGAAGAGGCAGCGCGTA
GCTGGCTGCAGGCCGGTGCGGGCGGCGGGCGGCTGTGTGCATGGCTGCGT
GATGTTCTGTCTGGCAGCTCGCCGCTGCTTGTGTGGCTGCTGCTTGTGTG
CAGTGGTGCGCATTTTGTGCTGTCTCGAGAAGATGCTATGTATGTTGTTT
GCTTTGGTGGCTGCTGCCCGTGCCGGCGCTACTGGCTGCTGCCGCGAGCG
CGGCGGGCGCTCGCGAGGCGAAGGCGGCGGGCGCTTGCGAGGCGAGGACC
GCGCTTGACCGTAGTCGACCGCACGGGTGGCGACGACCGGCGATGCGAGC
GAAGATGTTTGGCGTACTAAAAATAAAATCACAAAATCGCATAGGAGTTT
AGTATACGAAATCGGCCTCATGTCGTCCTCACAAATTCGTCCTATTACAG
AATCGCTCTCTAAGTCGCTGTTAAAAATGGTTCCTTGCTGTATTAATTCA
TAGAGGTGTATATACCTCCAGAGCATGCTTGAGACCCACCCTTTTCCGTG
GCGTGCGCGAGACTTGTTGGATACTGCGCACCCGCACCCCTGTAGCACGT
ACTGTGAGATGGCGAAGTGGCCCGAAACGTGGAGAATTCATGTATGTACT
GTAGAAAGACTAGTAATAGCAAAAATATAAAGGACTTGAAAATAGAGCCA
CCTTTGGCAAAATCAGGAAGAACCGATTGGCCATCGGCGATCGAGCGATC
CTGCGGGAACAGAACTGCAGTGCTCCGTCCTCCCGAGGGCGCGTGGTCAA
TGGCCTAACAGCTAAGGCATGCTAACTTGAGTACCCCCCCCCGCGCTATC
ATCACAACCCCCAACACCCCCACCCTCACCCCTACCCCGCCGCCATTCCT
CTGCCGGGCCGCAACTGTTCTGGCCCATATACAGGGCTCACCGTCGGCTA
CGTCGGGGCGTCGCACATCCCGGAATACAAGAAGGAAACGCACGCCCTGA
TGCTCATGGCGGGCGGGCGCGCGGACAACGGAAAGGGCGCGGAGATCGTG
ATCTCGGACATGACCGACCTGATCAAGATAATCGACTTCTTCGCGGGGGA
GAAGACGGCGGGCAAGTCCGCACCCTTCGATTTC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8852:4637..8870-

>mRNA_S-dermatodea_contig8852.16974.1 ID=mRNA_S-dermatodea_contig8852.16974.1|Name=mRNA_S-dermatodea_contig8852.16974.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig8852:4637..8870- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGTTCACAGTGGCGAGAGCGACTTCGACCCCCCGAGGTTCAAGCCGAA
CCCGTCGGTGTACCTAAAGGCGGCGGAGACGGAGGGCAAGGCGCCCATCA
ATTGCATCGCGGTGGAGGACAGCGGTTCCGGCGTGGGGTCGGCTTCCAAC
GCTGGTGTCGAAGGTTCACAGTGGCGAGAGCGACTTCGACCCCCCGAGGT
TCAAGCCGAACCCGTCGGTGTACCTAAAGGCGGCGGAGACGGAGGGCAAG
GCGCCCATCAATTGCATCGCGGTGGAGGACAGCGGTTCCGGCGTGGGGTC
GGCTTCCAACGCTGGTGTCGGGCTCACCGTCGGCTACGTCGGGGCGTCGC
ACATCCCGGAATACAAGAAGGAAACGCACGCCCTGATGCTCATGGCGGGC
GGGCGCGCGGACAACGGAAAGGGCGCGGAGATCGTGATCTCGGACATGAC
CGACCTGATCAAGATAATCGACTTCTTCGCGGGGGAGAAGACGGCGGGCA
AGTCCGCACCCTTCGATTTCGGCTCACCGTCGGCTACGTCGGGGCGTCGC
ACATCCCGGAATACAAGAAGGAAACGCACGCCCTGATGCTCATGGCGGGC
GGGCGCGCGGACAACGGAAAGGGCGCGGAGATCGTGATCTCGGACATGAC
CGACCTGATCAAGATAATCGACTTCTTCGCGGGGGAGAAGACGGCGGGCA
AGTCCGCACCCTTCGATTTC
back to top