mRNA_S-dermatodea_contig885.16971.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig885.16971.1
Unique NamemRNA_S-dermatodea_contig885.16971.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig885.16971.1 vs. uniprot
Match: D8LJA8_ECTSI (Ribosomal protein L19 n=2 Tax=Eukaryota TaxID=2759 RepID=D8LJA8_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 5.850e-109
Identity = 172/186 (92.47%), Postives = 176/186 (94.62%), Query Frame = 3 
Query:  270 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPEVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQYKNKRVLMEAIHKKKGETARVKALKEQAEARKLKSKQKXXXXXXXXXAAAEARAKE 827
            VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLP+VVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQ+KNKRVLMEAIHKKKGETAR+KALKEQAEARKLK+KQK         AAAEARA E
Sbjct:    2 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPQVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQFKNKRVLMEAIHKKKGETARIKALKEQAEARKLKAKQKNERKEDRKKAAAEARAAE 187
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BLAST of mRNA_S-dermatodea_contig885.16971.1 vs. uniprot
Match: A0A835ZKQ0_9STRA (Ribosomal protein L19 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKQ0_9STRA)

HSP 1 Score: 264 bits (674), Expect = 4.860e-86
Identity = 137/168 (81.55%), Postives = 151/168 (89.88%), Query Frame = 3 
Query:  270 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPEVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQYKNKRVLMEAIHKKKGETARVKALKEQAEARKLKSKQK 773
            VSLKLQKRLAASVLKCGK KIWLDPNEVNEISLANSRQNIRKL KDGL+I+ P V+HSRARV  R+EAK+KGRHTGPGKR GTANARLPFKL+W RRMR+LRRMLRKYR+AKK+DKHLYH+LY+ CKGNQ+KNKRVLMEAIHK K ET R +AL EQAEARK K+  K
Sbjct:    2 VSLKLQKRLAASVLKCGKRKIWLDPNEVNEISLANSRQNIRKLKKDGLIIKKPTVIHSRARVLARNEAKRKGRHTGPGKRHGTANARLPFKLLWMRRMRVLRRMLRKYRDAKKVDKHLYHKLYMLCKGNQFKNKRVLMEAIHKMKAETLRERALVEQAEARKAKASAK 169
[Close]
BLAST of mRNA_S-dermatodea_contig885.16971.1 vs. uniprot
Match: K3X7E5_GLOUD (Ribosomal protein L19 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X7E5_GLOUD)

HSP 1 Score: 254 bits (649), Expect = 3.830e-82
Identity = 131/166 (78.92%), Postives = 147/166 (88.55%), Query Frame = 3 
Query:  270 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPEVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQYKNKRVLMEAIHKKKGETARVKALKEQAEARKLKSK 767
            VSLKLQKRLAASVLKCGK K+WLDPNE  E++LANSRQNIRKLVKDG +I+ PEV+HSRAR   R+EAK+KGRHTG GKRRGTANARLPFK+IW RRMR+LRR+LRKYREAKKIDKH+YHELY+  KGNQ+KNKRVLME IHK K E AR K LKEQ+EARK K+K
Sbjct:    2 VSLKLQKRLAASVLKCGKRKVWLDPNESTELALANSRQNIRKLVKDGFIIKKPEVIHSRARFQKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRMRVLRRLLRKYREAKKIDKHIYHELYMRSKGNQFKNKRVLMETIHKMKAERAREKTLKEQSEARKEKAK 167
[Close]
BLAST of mRNA_S-dermatodea_contig885.16971.1 vs. uniprot
Match: A0A7S2V357_9STRA (Ribosomal protein L19 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V357_9STRA)

HSP 1 Score: 254 bits (648), Expect = 5.810e-82
Identity = 133/168 (79.17%), Postives = 150/168 (89.29%), Query Frame = 3 
Query:  270 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPEVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQYKNKRVLMEAIHKKKGETARVKALKEQAEARKLKSKQK 773
            VSL+LQKRLAASVLKCGK KIWLDPNE+NEIS+ANSRQNIRKLVKDGLVIR P+VVHSRARV  R+EAK KGRHTG GKR GTANARLPFKLIW RR R+LRR+LRKYR+AKKIDKHLYH+LY+  KGNQ+KNK+VLMEAIH+ K E AR KAL +QAEARK +++ K
Sbjct:    2 VSLRLQKRLAASVLKCGKRKIWLDPNEINEISMANSRQNIRKLVKDGLVIRKPQVVHSRARVVERNEAKAKGRHTGYGKRHGTANARLPFKLIWMRRARVLRRLLRKYRDAKKIDKHLYHDLYMRSKGNQFKNKKVLMEAIHRMKAEKAREKALADQAEARKTRARMK 169
[Close]
BLAST of mRNA_S-dermatodea_contig885.16971.1 vs. uniprot
Match: A0A484E6K8_BRELC (Ribosomal protein L19 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E6K8_BRELC)

HSP 1 Score: 250 bits (639), Expect = 9.010e-81
Identity = 129/166 (77.71%), Postives = 147/166 (88.55%), Query Frame = 3 
Query:  270 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPEVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQYKNKRVLMEAIHKKKGETARVKALKEQAEARKLKSK 767
            VSLKLQKRLAASVLKCGK K+WLDPNE NEI+LANSRQNIRKLVKDG VI+ P+V+HSRAR   R+EAK+KGRHTG GKRRGTANARLPFK+IW RR+R+LRR+LRKYREAKKIDKH+YH+LY+  KGNQ+KNKRVLME IHK K E  R K LKEQ+EARK K++
Sbjct:    2 VSLKLQKRLAASVLKCGKRKVWLDPNESNEIALANSRQNIRKLVKDGFVIKKPQVIHSRARFTKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRIRVLRRLLRKYREAKKIDKHIYHDLYMRSKGNQFKNKRVLMETIHKMKAERHREKTLKEQSEARKEKAR 167
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BLAST of mRNA_S-dermatodea_contig885.16971.1 vs. uniprot
Match: M4C2P1_HYAAE (Ribosomal protein L19 n=26 Tax=Eukaryota TaxID=2759 RepID=M4C2P1_HYAAE)

HSP 1 Score: 250 bits (638), Expect = 1.320e-80
Identity = 130/166 (78.31%), Postives = 146/166 (87.95%), Query Frame = 3 
Query:  270 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPEVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQYKNKRVLMEAIHKKKGETARVKALKEQAEARKLKSK 767
            VSLKLQKRLAASVLKCGK KIWLDPNE NEI+LANSRQNIRKLVKDG VI+ P+V+HSRAR   R+EAK+KGRHTG GKR GTANARLPFK+IW RR+R+LRR+LRKYREAKKIDKH+YHELY+  KGNQ+KNKRVLME IHK K E  R K LKEQ++ARK K+K
Sbjct:    2 VSLKLQKRLAASVLKCGKRKIWLDPNESNEIALANSRQNIRKLVKDGFVIKKPQVIHSRARFTKRNEAKRKGRHTGIGKRHGTANARLPFKVIWMRRIRVLRRLLRKYREAKKIDKHIYHELYMRSKGNQFKNKRVLMETIHKMKAERHREKTLKEQSDARKEKAK 167
[Close]
BLAST of mRNA_S-dermatodea_contig885.16971.1 vs. uniprot
Match: A0A067BLM6_SAPPC (Ribosomal protein L19 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BLM6_SAPPC)

HSP 1 Score: 249 bits (635), Expect = 3.290e-80
Identity = 128/166 (77.11%), Postives = 147/166 (88.55%), Query Frame = 3 
Query:  270 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPEVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQYKNKRVLMEAIHKKKGETARVKALKEQAEARKLKSK 767
            VSLKLQKRLAASVLKCGK K+WLDPNE  EI+LANSRQNIRKLVKDG VIR P+V+HSRAR   R+EAK+KGRHTG GKRRGTANARLPFK+IW RRMR+LRR+LRKYR+AKKID+H+YH+LY+  KGNQ+KNKRVLME IHK K E  R KALK+Q+EARK K++
Sbjct:    2 VSLKLQKRLAASVLKCGKRKVWLDPNESTEIALANSRQNIRKLVKDGFVIRKPQVIHSRARFTKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRMRVLRRLLRKYRDAKKIDRHMYHDLYMRAKGNQFKNKRVLMEVIHKLKSEHIREKALKDQSEARKEKAR 167
[Close]
BLAST of mRNA_S-dermatodea_contig885.16971.1 vs. uniprot
Match: A0A6V1T3Z5_HETAK (Ribosomal protein L19 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T3Z5_HETAK)

HSP 1 Score: 249 bits (636), Expect = 5.930e-80
Identity = 129/168 (76.79%), Postives = 149/168 (88.69%), Query Frame = 3 
Query:  270 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPEVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQYKNKRVLMEAIHKKKGETARVKALKEQAEARKLKSKQK 773
            VSLKLQKRLAASVLKCGK KIWLDPNE+NEIS ANSRQNIRKL KDGL+++ P+VVHSRARV   +EAK KGRHTG GKRRGTANARLPFK+IW RRMR+LRR+L+KYR+AKK+DKHLYHELY+  KGNQ+KNKRVLME+IHK K E AR KAL +QAEA+K +++ K
Sbjct:   21 VSLKLQKRLAASVLKCGKRKIWLDPNEINEISSANSRQNIRKLFKDGLLVKKPQVVHSRARVLAYNEAKAKGRHTGYGKRRGTANARLPFKIIWMRRMRVLRRLLKKYRDAKKLDKHLYHELYMRSKGNQFKNKRVLMESIHKMKAEKARAKALVDQAEAKKTRARLK 188
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BLAST of mRNA_S-dermatodea_contig885.16971.1 vs. uniprot
Match: A0A7S2G695_9STRA (Ribosomal protein L19 n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G695_9STRA)

HSP 1 Score: 246 bits (627), Expect = 8.320e-79
Identity = 127/168 (75.60%), Postives = 147/168 (87.50%), Query Frame = 3 
Query:  270 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPEVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQYKNKRVLMEAIHKKKGETARVKALKEQAEARKLKSKQK 773
            VSLKLQKRLAASVLKCG+ K+WLDPNE NEIS+ANSRQNIRKL+KDG V + P+VVHSR+RV    +AK+KGRHTG GKR+GTA+ARLP K++W RRMR+LRR+LRKYREAKKID+HLYHELY+ CKGNQ+KNKRVLMEAIHK K   AR KAL EQA+ARK K+K K
Sbjct:    2 VSLKLQKRLAASVLKCGRKKVWLDPNESNEISMANSRQNIRKLIKDGFVFKKPQVVHSRSRVMRHLDAKRKGRHTGYGKRKGTADARLPLKVLWMRRMRVLRRLLRKYREAKKIDRHLYHELYMRCKGNQFKNKRVLMEAIHKMKAGKAREKALMEQADARKNKAKAK 169
[Close]
BLAST of mRNA_S-dermatodea_contig885.16971.1 vs. uniprot
Match: F0WQF6_9STRA (Ribosomal protein L19 n=2 Tax=Albugo TaxID=65356 RepID=F0WQF6_9STRA)

HSP 1 Score: 245 bits (625), Expect = 1.460e-78
Identity = 127/166 (76.51%), Postives = 146/166 (87.95%), Query Frame = 3 
Query:  270 VSLKLQKRLAASVLKCGKGKIWLDPNEVNEISLANSRQNIRKLVKDGLVIRLPEVVHSRARVNLRHEAKKKGRHTGPGKRRGTANARLPFKLIWQRRMRILRRMLRKYREAKKIDKHLYHELYLGCKGNQYKNKRVLMEAIHKKKGETARVKALKEQAEARKLKSK 767
            VSL+LQKRLAASVLKCGK KIWLDPNE NEI+LANSR+NIRKLVKDG VI+ P+V+HSRAR   R+EAK+KGRHTG GKRRGTANARLPFK+IW RRMR+LRR+LRKYREAKKID+ LYH+LY+  KGNQ+KNKRVLME IHK K E  R K L+EQ+EARK ++K
Sbjct:    2 VSLRLQKRLAASVLKCGKRKIWLDPNESNEIALANSRENIRKLVKDGFVIKKPQVIHSRARFQKRNEAKRKGRHTGIGKRRGTANARLPFKVIWMRRMRVLRRLLRKYREAKKIDRFLYHDLYMRSKGNQFKNKRVLMETIHKMKAERHREKTLREQSEARKERAK 167
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig885.16971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJA8_ECTSI5.850e-10992.47Ribosomal protein L19 n=2 Tax=Eukaryota TaxID=2759... [more]
A0A835ZKQ0_9STRA4.860e-8681.55Ribosomal protein L19 n=2 Tax=Tribonema minus TaxI... [more]
K3X7E5_GLOUD3.830e-8278.92Ribosomal protein L19 n=2 Tax=Pythiaceae TaxID=478... [more]
A0A7S2V357_9STRA5.810e-8279.17Ribosomal protein L19 n=1 Tax=Fibrocapsa japonica ... [more]
A0A484E6K8_BRELC9.010e-8177.71Ribosomal protein L19 n=1 Tax=Bremia lactucae TaxI... [more]
M4C2P1_HYAAE1.320e-8078.31Ribosomal protein L19 n=26 Tax=Eukaryota TaxID=275... [more]
A0A067BLM6_SAPPC3.290e-8077.11Ribosomal protein L19 n=4 Tax=Saprolegniaceae TaxI... [more]
A0A6V1T3Z5_HETAK5.930e-8076.79Ribosomal protein L19 n=2 Tax=Heterosigma akashiwo... [more]
A0A7S2G695_9STRA8.320e-7975.60Ribosomal protein L19 n=2 Tax=Dictyocha speculum T... [more]
F0WQF6_9STRA1.460e-7876.51Ribosomal protein L19 n=2 Tax=Albugo TaxID=65356 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig885contigS-dermatodea_contig885:3454..9749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue8.4e-31
Seed eggNOG ortholog2880.D8LJA8
Preferred nameRPL19
KEGG rclassRC00002,RC00017
KEGG koko:K00844,ko:K02885,ko:K14780
KEGG ReactionR00299,R00760,R00867,R01326,R01600,R01786,R01961,R03920
KEGG Pathwayko00010,ko00051,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,ko03010,ko04066,ko04910,ko04930,ko04973,ko05230,map00010,map00051,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200,map03010,map04066,map04910,map04930,map04973,map05230
KEGG ModuleM00001,M00177,M00179,M00549
GOsGO:0000184,GO:0000956,GO:0001889,GO:0002181,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010259,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030097,GO:0030684,GO:0030687,GO:0031099,GO:0031100,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061008,GO:0065007,GO:0070180,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0097421,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904,GO:1990932
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG2147@1,KOG1696@2759
Ec32 ortholog descriptionRibosomal protein L19/L19e domain
Ec32 orthologEc-02_005390.1
EC2.7.1.1,3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03009,ko03011,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size842
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig885.16971.1prot_S-dermatodea_contig885.16971.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig885 7737..9749 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925369.867523-UTR-S-dermatodea_contig885:3453..38481622925369.867523-UTR-S-dermatodea_contig885:3453..3848Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig885 3454..3848 +
1694079887.0078273-UTR-S-dermatodea_contig885:3453..38481694079887.0078273-UTR-S-dermatodea_contig885:3453..3848Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig885 3454..3848 +
1622925369.878259-UTR-S-dermatodea_contig885:4778..48611622925369.878259-UTR-S-dermatodea_contig885:4778..4861Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig885 4779..4861 +
1694079887.0246298-UTR-S-dermatodea_contig885:4778..48611694079887.0246298-UTR-S-dermatodea_contig885:4778..4861Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig885 4779..4861 +
1622925369.887642-UTR-S-dermatodea_contig885:7654..77361622925369.887642-UTR-S-dermatodea_contig885:7654..7736Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig885 7655..7736 +
1694079887.0389287-UTR-S-dermatodea_contig885:7654..77361694079887.0389287-UTR-S-dermatodea_contig885:7654..7736Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig885 7655..7736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925369.8974175-CDS-S-dermatodea_contig885:7736..78101622925369.8974175-CDS-S-dermatodea_contig885:7736..7810Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig885 7737..7810 +
1694079887.0493443-CDS-S-dermatodea_contig885:7736..78101694079887.0493443-CDS-S-dermatodea_contig885:7736..7810Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig885 7737..7810 +
1622925369.918927-CDS-S-dermatodea_contig885:8648..87541622925369.918927-CDS-S-dermatodea_contig885:8648..8754Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig885 8649..8754 +
1694079887.0615609-CDS-S-dermatodea_contig885:8648..87541694079887.0615609-CDS-S-dermatodea_contig885:8648..8754Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig885 8649..8754 +
1622925369.931122-CDS-S-dermatodea_contig885:9647..97491622925369.931122-CDS-S-dermatodea_contig885:9647..9749Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig885 9648..9749 +
1694079887.0728958-CDS-S-dermatodea_contig885:9647..97491694079887.0728958-CDS-S-dermatodea_contig885:9647..9749Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig885 9648..9749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig885.16971.1

>prot_S-dermatodea_contig885.16971.1 ID=prot_S-dermatodea_contig885.16971.1|Name=mRNA_S-dermatodea_contig885.16971.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=94bp
MRILRRMLRKYREAKKIDKHLYHELYLGCKGNQYKNKRVLMEAIHKKKGE
TARVKALKEQAEARKLKSKQKNERKEDRKKAAAEARAKENAAA*
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mRNA from alignment at S-dermatodea_contig885:3454..9749+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig885.16971.1 ID=mRNA_S-dermatodea_contig885.16971.1|Name=mRNA_S-dermatodea_contig885.16971.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6296bp|location=Sequence derived from alignment at S-dermatodea_contig885:3454..9749+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGTATTTTGCAGAAGCATGTGTGATGTATCGGGGGCTCGATAGGGGGA
AGTGACGGGTCGATTCTAGTGGTTACGAAGAGGCGACGTAGTATAGACGC
ATAAGGGACGCGTGACGCGGACCTTATACTTGTAGGGTTAAGTCCCTTCC
ACCTCTCGTTCCCAAGTTGCTTCCTGCCTTTGGATGTTTGTTTCCTTTCT
CACGCCTCGGCGCCATCTCCTTTTCTTGAATTGACTTGCCCCCAACTCAA
AAATCAACACGAACAACAGGTGTCGCTCAAACTCCAAAAGCGGCTTGCCG
CCTCCGTGCTCAAGTGCGGAAAGGGCAAGATCTGGCTCGACCCCAACGAG
GTCAACGAGATCTCCCTCGCCAACTCTCGCCAGAACATCCGCAAGGTGGG
GTGTGGGGTGGATTGCACTTACTTATCCCCTGTCCCCTTCTTGTGTACGA
TACACAATGTACAAGTAACGCCTCCGAACTCCCACCCCGATCTATATTTT
TAGGGCGTGTGCAAACGAAAGGATGATGGCTACTGTAGTACATCAAATTG
GTACCGTACTATTTATTAATACTGTACAAGTACCACCCTCCCGTGAACCG
TAGCCTGGCCGGCGAAAACCGGGCATATACCGCTCCGTTCCGGCATTGGT
GGGGCGCATGGTCTGTGTCCGCGTGGATACGACATGCAATAAGACAAAAG
TACAACGCCCTGCCGCATCGTCATCACTTGAACAGGGCCAACACCCGTTA
CATTTTATACAGAGTATGATACGTACTCTCGTAACTCTATATTTTCTGTG
GGAAATTGATTCGGAATCCGAGGAGCGATCTTGATGGATGTCGGGAGATA
ATGCCCTTTTTTGCTTTCTGCCGGCACCATAATATGTGGAGTTTTCCGCG
TTACCTTGGGAACGAGAGATGCTTGAAAGCCGACTCCGGATGCGGAAGTA
TAGCTGCCGAGCTTTCTTTCGACGAAATTCCACGCTCAACTCGTCCAAGT
ACATATGACACATATGATACCAGCCTTATTATCCTGCAGTTTTACGTTCA
ACATGTCACGTGGTGGTTGCAGTCTTGGCCCATGCCGTCTTCGAGGAACC
TGTCAGGCCCATTACATAATGTAACGAGGCTTTTTTTTGTATTTGGTGCG
GGATGGACGTTGTTGAACCCCCCGGGCCACCCGGATACTGGACACAGGTC
GTCTGCTTTTTTGTGGCAGTCATGCCGATCCCACAGGTAACTGCTGTGAC
GTTTGTTACCGATCTCACCACTTTCTTCTTCTCTCTCTACTCGTTTTTTT
TCCTGTGAACTCCAACAACAAACAGCTGGTGAAGGATGGACTCGTGATCC
GCTTGCCGGAGGTCGTCCACTCGCGCGCCCGAGTCAACCTCCGCCACGAG
GCGAAGAAGTGAGTAATTTGCATGTTCTTGCCTCTTGCTGTGTGGGCTCT
CTGATCACACCATCTATCACACCAAAACTGTTGGAAAGCTACTCTACGGT
AACCGTTTGAAAGCAACTTGAAAGCGTTGGCCACGAAACTGCTACCTGTT
GTTGGCGCCTCATGGCTATATCACAACGCCAAGAAAACGAAATAGATGTG
ATGTAGATGGAGAGCGCTCTCCAATACCCGATATCAAATGGAGGCCGTGC
TGCGAATTACCGTCGCAGCAAAAGACTGGGGAAGAGCTATTTTTGTACTT
GTATACACAAACTTGTATATGATTGCCGGAAAAAAACTCCTTTGCATGCA
GTGAAGCCCGAGCCCGTTTGTAACCCACCCAGTAGACTTTTGACACTTCG
TCGATGAGGACACTTCCCGCGATTTTATTGGCCAAAGCTGACAGTCTGCG
AACGAAAAAATAGCCGTTGAGAAAAGTTTGGCTCAAACGTGGCGCATCGG
CCGCGTTTAAATGCTAAAGACCTCGGATAAAGGTTGAAGATTTTTACGGC
GGTATTGGATCACGGTTAGAGTGGTTGCGACGCCCGGGTGGTCCCCATCC
CATGTCGGGTTTCCTCATAACAACATTGTACTTTTTCACCACTGTTGTCG
ACAAACATGGTAGAGTTTACCCTCGCACCGCCCGAGAATTTCGAAGTATC
GCTCGCGTTTTTCGTCCCCGCCCCCAGCTCGAGATTTCGTGTGGGTTTTT
GCGTTTCGTTGGTTCCGTTTCCGATGTGAGGTGCGACCTGTATGCACATC
TCTACCCGCCCTCCCCTAGTGTCTGGCGGTTTAATTTTGGTTGTGTGCAA
GTTCCGGCTCCGCATGAATATATCGTGAGTCGCCAGGCCGAGATAGTCGA
GGAGTAACCAAGAAACCTCCCTATTTTTCTTCATTTCCGCCGAACGTGGG
AATACACATGTACACATATGCGTGCTATTGATAGTGTGGTGGCGGCTACA
CGCACACGCACAGCAAGCGCGCCGACTATGAAAACTATATTAGTCGTCGG
CATCGGCAGGGTCGTCATTTTTTCCATCGTCGCTTAGAGTTATGTATGCG
AGGAGTAGTGACCGTTCGTGACGAGGAAGAGAGGGGCAGATGACCCCGTA
GATGGGGAGTTGGCGCGCGCGCGGAATTGCCTACCACAAGGTTTTGGGCA
TACAGGCCAGGCCGTGCGTGGTGTGGGCGAAAATATATGTAAACCGCGCA
ACCGTTTGTTGTGTGTTTGTGGTGATGCTGAAAACACGATGAGCTTTTCT
TTTGTGTTCCCAGGACGAGGCAACACAGTATTATTATATTTGCAAAAAGG
AAATTTGGGCGACCGACGCGACGCCCTCTCGAGTTCGTGTCTCTGGACCG
TTTGCGTCGTTAACACGAGCAACGACACACATTGTGGTTTCGGTACTGCA
AGTAGTTTTGAGCAAGCCGGCATTTTCGTGCTGCCTTTGGAAGAAAGTAT
CGACCTTAAGAATTGATATTACCTCATAAGGTCTGACGACTATACACATA
TAAGTTGTTGATTTGCACACGTACACCGTACACTGTAGCCGATCGTCTTC
ATCCGACCCGACTTGTGGTCAGATGCTTTCAGCAAAGAGTCAAGGATAAC
ATAACTATTATAATCCGAGCTCTACTTCTCCACTACACAACACTGCTCTC
CATAGTACTTGCTAATGGTACGAACAAAGTAGTGCGCGTACATGCTCACA
ACGCATGCGATTACAAGTATAGAGTCCGCAGTCCCTATTTCCGCCGCCAC
GATTGCTTTCGCGGACCAAAACACCTCCGTAAGCGAGGGTGGATACCTGT
GGGAGAGACGGCCGTCCTTGCCCACATACTGTAGACCTGCCACACCGATC
GAACACAACATGCAAAGGCGGAGATTGTAGTGTATCACTTGTGTAAGGGT
ACGTGTAATTTGGGGCAGAGGTGTACAATCACGTGCTCAGCCTACACGTG
TTTCTTATATCTTGTACAACCACTGTACCTTTGTATTACACACGCGTACT
TTTAAAACAGTTCAAGCAGGTTGTACACTCGTAAAGTACACGGGTTACAC
AGAGTACACTTCAGTATCCACCTTGGTATCATAGCGTTTTAATCTTTCCC
GGAATTATTGTCCGAGACAACCGATTCCGGGGCGAAAAGTGGGCGCCAGC
CACCCCGCGCACAATTAATAGTGCTAGGGATCTAGCCGTCGAAACGTACC
GTAGGTCAGTAAGCAGGCTGCGCCTTGTTGCTTTACACGGGAAGATAAAG
CTGCTTGTAATCGATTTGGTGCCGGGGATTTCCCCGGGTCGCAACGCCTC
GCATCTCTTGTGGATGGATCGGTGCCCTTCGCAAACCCGCTAGAGGCTCC
TAAGTGTGTGGTGCACACAGGGACGCGGGTCTCCATCGCGCTATCATTGT
GTTCTACAATGGTTCGAAATAAAGGATATCAGCTAAGACGGTGGAGATGC
CGTTGTGACGGCCTCACTATCCGGCCCCAGTCACAGCCCCCCCCCTAATC
CCCCCCCTCGATACAGTTGACGAAGCGCTGCAACTGTGCGCGAAGACGAC
TGCATACCCCTGCTACCTGATGCATATTTTTTATGTGGAATGAGACAACT
GGTGTTCAACAGGCATGCATGCTCTTTCATTGTCAAGTGGTGTCCAGCGT
GAATATATTGGTCAGAGTTATAATGCGTGGAACTAGGTCTGACCCCCCCC
CTCCCCCCCCTTTGCTCCTTTGCTGATGCATTGATGTTGTGATGAGCGCA
GGAAAGGAAGGCACACTGGCCCTGGTAAGCGCCGGGGTACCGCCAACGCG
CGCTTGCCCTTCAAGCTGATCTGGCAGCGCCGCATGCGGATCCTCCGCCG
CATGCTCCGCAAGTACCGCGAAGCGAAGAAGATCGACAAGCACCTTTACC
ACGAGCTGTGAGTACATTTTCATCTAGTATTTTTGGTGCTCATCTGTGTG
ATGCATCAACTGTTTTTGGTTTTGTACCAGGTAGTATTTTTTGTGGTGTT
CTTTGTACCGCTTGGGTATCATATCATACCGTAGATGTTTCTTAGACGGT
AGAAGTAGGTCTGTTTGTGGTGGATGTATCATTTTTTCTTCCTCTTGATG
CTTGTGGGACGATTGTGTCGCGAGTTTTTTTTCTTCAATTTTATGTTGAA
TGGGTGTTTGGCGAAAGGCCATGATTTATAAATGATTGTCGGCCTCTGGA
TCAGAGTGGCTGATCCCAAGAAAAGAGCTGGAGAAACCGAACTTCCGGCC
CACGCTGATGGTTTCATTTGACGACGAGAAAATGCTGACAACGGCAACTT
GACAAATATCATAGATTGGCTGTGCTTCGGCTCCTGCTCTGGAAAGGTCG
TTTTGCTGTGCGAGGCCTAGCATGGCACGGCGTTTTTGTGCGCAAACTGC
TGTTTGGGTAAAAAGCTAAGCGTGGCCCATTTATCATTATTTCCACCGCT
GCTACAGCATGTACAGCGAGGATTCGCCACCGTTCGGGTACTGTATCTGT
TCGATGCCTAGTATGATATTACGGTGCGGGGTATGTCTCCGAAACCAGGC
TTTTAGTCCCTAAAGGTAACGCCGAGTTTTTTTTTCCACCTTTTACACTG
CTTTTTCTCGGCCAGAGCACCTTTAACGCTCCTCCTGCCTCTAGTCCATG
CATCTTCTTTAAAGCTGTTTGGCCTTCTCTGATCGCGGTGCGCGCGCGTC
TGCTGTTCCTTGTCCTGTTTTTTCGTGGCGTCTGCCGTCCATCAGTTACC
TGGGGTGCAAGGGTAACCAGTACAAGAACAAGCGCGTGCTGATGGAGGCC
ATCCACAAGAAGAAGGGAGAGACTGCGCGTGTCAAGGCGCTCAAGGAGCA
GGTAAGGGGGAAGAGAGGGAGGGAGTAAAAAGGCGACATCAAGACCGCGC
AGTCTCCTTCGGCAGCTCAGCTCGTGCACGACCGTGTGATAAAACGATAA
TAATATATAAACATGCATTCATCGTGCGTGGGGTTTCTTCTTTTTCCTGT
CATAATACCACACATACTGTACAGGTGGTGCGGTGCGGTGGGGGCAGAGA
TAGCGCTGCCCCGTTGTTGCTGAAGGAATTATTAGGGATTTGAGTATCAT
AGGCGGTGTGGTTTTTTTCGAACCGGCAACAGAACTTTGCGCTCCTGTCG
TTGTGTTGACATGATGGCGGCAAACAATGTCCAAGCTCTGTACGTGTGTT
GACAGAAGAAGCGTTCACAGTGGCAGCACCTTGCCTATGTGACAATTGCA
CCGTGCGCCAACAAATATCTTGCGTTTCGTATCATGCTTTTGAAAATCTA
ATAATACGGAACGCCACGATGATGCCGTTTTCCTCAGAGAAGTGTGTTCA
TATTTTTTTTCTCCCATTTTTTTCTCAAAAGACAACCCACGCCTCTTTGC
CACTTGTTTGTTTTTTTCATCCACGCCCCGACAGCCTCTTCCCGTTTTTT
TTCCCCTCCGTTTTTCTTTTTCTTTTTAACAATAAAATCCAAGCCTTTTT
TGCCGCGTGTTTCACATGTTCATTTTCATTGAATGCACGTCTTCTCTCCG
CTATGTTTGCCCCCTAAAAAAACAAAGATTTCACAAACATAAGAGCGGGC
GTTGGGGTCCCACCTTTTCAAGAGGGAAGATTGTCCNNNNNNNNNNTCTT
GATCCTCACTTTTTATCTACCATGTTTTTTTTTCTTATTTCTTTTTCCCC
CCCCCCCCCCTCCCTCCCGCTCCTCCCTTCTTTTCTTTAATCAGGCGGAG
GCACGCAAGCTCAAGTCTAAGCAGAAGAACGAGCGCAAGGAGGACCGCAA
AAAAGCGGCCGCCGAGGCGCGCGCGAAGGAGAACGCGGCCGCCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig885:3454..9749+

>mRNA_S-dermatodea_contig885.16971.1 ID=mRNA_S-dermatodea_contig885.16971.1|Name=mRNA_S-dermatodea_contig885.16971.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at S-dermatodea_contig885:3454..9749+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGGATCCTCCGCCGCATGCTCCGCAAGTACCGCGAAGCGAAGAAGAT
CGACAAGCACCTTTACCACGAGCTATGCGGATCCTCCGCCGCATGCTCCG
CAAGTACCGCGAAGCGAAGAAGATCGACAAGCACCTTTACCACGAGCTTT
ACCTGGGGTGCAAGGGTAACCAGTACAAGAACAAGCGCGTGCTGATGGAG
GCCATCCACAAGAAGAAGGGAGAGACTGCGCGTGTCAAGGCGCTCAAGGA
GCAGTTACCTGGGGTGCAAGGGTAACCAGTACAAGAACAAGCGCGTGCTG
ATGGAGGCCATCCACAAGAAGAAGGGAGAGACTGCGCGTGTCAAGGCGCT
CAAGGAGCAGGCGGAGGCACGCAAGCTCAAGTCTAAGCAGAAGAACGAGC
GCAAGGAGGACCGCAAAAAAGCGGCCGCCGAGGCGCGCGCGAAGGAGAAC
GCGGCCGCCTGAGCGGAGGCACGCAAGCTCAAGTCTAAGCAGAAGAACGA
GCGCAAGGAGGACCGCAAAAAAGCGGCCGCCGAGGCGCGCGCGAAGGAGA
ACGCGGCCGCCTGA
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