mRNA_S-dermatodea_contig88460.16967.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig88460.16967.1
Unique NamemRNA_S-dermatodea_contig88460.16967.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig88460.16967.1 vs. uniprot
Match: D8LQW0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQW0_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 9.810e-12
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   13 RGRYEPPESELSTPLRRSDWTVPHGSALQALAAALDDAADNTKVS 147
            R RYEPPES ++TPLRRSDW VPHGSA+ ALAAALD+AA +T  S
Sbjct:  543 RIRYEPPESAITTPLRRSDWKVPHGSAMHALAAALDEAAGSTACS 587
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig88460.16967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQW0_ECTSI9.810e-1273.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig88460contigS-dermatodea_contig88460:291..455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_001770.1
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925369.6709118-CDS-S-dermatodea_contig88460:290..4551622925369.6709118-CDS-S-dermatodea_contig88460:290..455Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88460 291..455 -
1694079886.9249246-CDS-S-dermatodea_contig88460:290..4551694079886.9249246-CDS-S-dermatodea_contig88460:290..455Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88460 291..455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig88460.16967.1prot_S-dermatodea_contig88460.16967.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig88460 291..455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig88460.16967.1

>prot_S-dermatodea_contig88460.16967.1 ID=prot_S-dermatodea_contig88460.16967.1|Name=mRNA_S-dermatodea_contig88460.16967.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=55bp
PPTNRGRYEPPESELSTPLRRSDWTVPHGSALQALAAALDDAADNTKVSA
EKSSR
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mRNA from alignment at S-dermatodea_contig88460:291..455-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig88460.16967.1 ID=mRNA_S-dermatodea_contig88460.16967.1|Name=mRNA_S-dermatodea_contig88460.16967.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at S-dermatodea_contig88460:291..455- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCACCGACGAACCGCGGCAGGTACGAACCCCCTGAATCGGAACTATCAAC
GCCGCTCCGCCGATCTGACTGGACCGTGCCGCACGGCTCTGCGCTGCAAG
CTCTCGCTGCCGCCCTCGACGACGCTGCCGACAACACCAAGGTGAGCGCC
GAGAAGAGTAGTAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig88460:291..455-

>mRNA_S-dermatodea_contig88460.16967.1 ID=mRNA_S-dermatodea_contig88460.16967.1|Name=mRNA_S-dermatodea_contig88460.16967.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at S-dermatodea_contig88460:291..455- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCACCGACGAACCGCGGCAGGTACGAACCCCCTGAATCGGAACTATCAAC
GCCGCTCCGCCGATCTGACTGGACCGTGCCGCACGGCTCTGCGCTGCAAG
CTCTCGCTGCCGCCCTCGACGACGCTGCCGACAACACCAAGGTGAGCGCC
GAGAAGAGTAGTAGGCCACCGACGAACCGCGGCAGGTACGAACCCCCTGA
ATCGGAACTATCAACGCCGCTCCGCCGATCTGACTGGACCGTGCCGCACG
GCTCTGCGCTGCAAGCTCTCGCTGCCGCCCTCGACGACGCTGCCGACAAC
ACCAAGGTGAGCGCCGAGAAGAGTAGTAGG
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